PRGDB00063893 (Zm.658)

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Zm.658
Gene Type Putative_R-Genes,_predicted_from_NCBI_UniGene
GenBank 195641839 (EU968270)
Gene Class Unknown
Domain Type
Gene Species Zea mays

Comment?

Zea mays clone 318026 dihydroflavonol-4-reductase mRNA, complete cds

DNA Sequence

TAGAATGTTCCTGCCGATGCTTTTATAAGAGAAGGTTGCTCTTTCTTCTCTAGAGTGTCTAGCTGAGAACATGGTGACCTCAAGCAAGGGCAAGGTATGTGTAACCGGGGCCTCAGGCTTTGTTGCCTCTTGGCTTATCAAACGGCTCCTCGAGTCTGGATATCATGTGGTAGGGACTGTCAGGGACCCAGGAAATCACCAAAAAACAGCCCACCTTTGGAAATTACCTGGCGCTAAAGAGAGGCTGCAAATCGTGCGAGCTGATCTGTTGGAAGAAGGGAGCTTCGACAGCGCCGTGATGGCCTGTGAGGGTGTATTCCACACTGCATCCCCCGTCCTCGCTAAACCCGACTCTACTAGCAAGGAGGAAACGCTCGTTCCTGCGGTGAACGGTACTCTGAACGTGCTGAGATCGTGCAAGAAGAACCCCTTCCTGAAAAGGGTCGTCCTTACGTCTTCGTCGTCTGCGGTGAGGATCAGGGACGATGGTGGCCAGTCCAGCAGTAACATCTCGCTGGACGAAACGACATGGAGCTCCGTGCCACTCTGCGAGAAGATGCACCTATGGTATGCCCTAGCCAAGGTATTTGCAGAGAAAGCGGCGTGGGAGTTCGCCAAGGAGAACGGCATCGACCTTGTGACTGTCCTCCCGTCGTTCGTGATCGGGCCCAGTTTGTCCCACGAGCTATGCGTTACCGCTTCAGACGTCCTAGGCCTATTCCAAGGCGACACGGCAAGGTTCAGCTCGTACGGAAGAATGGGATACGTCCACATCGACGACGTTGCGAGCAGCCACATCCTGGTGTACGAGGTCCCCCAGGCCGCCGGGAGGTACCTGTGCAGCTCAGTGGTGCTGGACAACGACGAGCTGGTCTCCTCGCTCGCGAAACGCTACCCGATATTCCCCATACCCCGGAGGCTGAACAGCCCCTACGGCAAGCAGTCGTACCAGCTGAACACGTCGAAGCTGCAGGGGCTGGGCTTCAAGTTCAGAGGGGTGCAGGAGATGTTCGACGACTGCGTACAGTCGCTCAAAGACCAGGGACACCTGCTGGAGTGCCCCCTGTGAACTGCGATGGGGGTGCCTCCTGTGAACGCGCCGGTTGGGTTGCGTCCCGAACCCGCTGTTAATTCGGTTTTTTTCTTCAATAATTCCACGTCATGTCACGGTGTCCTCGCGCAGACTGCTACTGTCAGGGCGTCATAGCTCACGGGCTCTACGGCTACATGAATAAAATGTCACACTCGTCATTTGCTTTGCCaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagaaaaaaaaaaaaaaaa


Protein sequences

Name Description Sequence
Zm.658 translated coding region predicted by ESTScan from UniGene Zm.658

MVTSSKGKVCVTGASGFVASWLIKRLLESGYHVVGTVRDPGNHQKTAHLWKLPGAKERLQIVRADLLEEGSFDSAVMACEGVFHTASPVLAKPDSTSKEETLVPAVNGXSERAEIVQEEPLPEKGRPYVFVVCGEDQGRWWPVQQXHLAGRNDMELRATLREDAPMVCPSQGICRESGVGVRQGERHRPCDCPPVVRDRAQFVPRAMRYRFRRPRPIPRRHGKVQLVRKNGIRPHRRRCEQPHPGVRGPPGRREVPVQLSGAGQRRAGLLARETLPDIPHTPEAEQPLRQAVVPAEHVEAAGAGLQVQRGAGDVRRLRTVAQRPGTPAGVPPVNCDGGASCERAGWVASRTRC

Domains

Domain Start-End Description Sequence

superfamily: SSF51735
1-108 NAD(P)-binding Rossmann-fold domains

MVTSSKGKVCVTGASGFVASWLIKRLLESGYHVVGTVRDPGNHQKTAHLWKLPGAKERLQIVRADLLEEGSFDSAVMACEGVFHTASPVLAKPDSTSKEETLVPAVNG

Gene3D: G3DSA:3.40.50.720
IPR016040
8-112 no description
NAD(P)-binding domain

KVCVTGASGFVASWLIKRLLESGYHVVGTVRDPGNHQKTAHLWKLPGAKERLQIVRADLLEEGSFDSAVMACEGVFHTASPVLAKPDSTSKEETLVPAVNGXSER

HMMPanther: PTHR10366
8-108 FAMILY NOT NAMED,NAD DEPENDENT EPIMERASE/DEHYDRATASE

KVCVTGASGFVASWLIKRLLESGYHVVGTVRDPGNHQKTAHLWKLPGAKERLQIVRADLLEEGSFDSAVMACEGVFHTASPVLAKPDSTSKEETLVPAVNG

HMMPanther: PTHR10366:SF9
8-108 CINNAMOYL-COA REDUCTASE,CINNAMOYL-COA REDUCTASE

KVCVTGASGFVASWLIKRLLESGYHVVGTVRDPGNHQKTAHLWKLPGAKERLQIVRADLLEEGSFDSAVMACEGVFHTASPVLAKPDSTSKEETLVPAVNG

HMMPfam: PF01370
IPR001509
9-103 Epimerase
NAD-dependent epimerase/dehydratase

VCVTGASGFVASWLIKRLLESGYHVVGTVRDPGNHQKTAHLWKLPGAKERLQIVRADLLEEGSFDSAVMACEGVFHTASPVLAKPDSTSKEETLV

Seg: seg
204-220 seg

PRAMRYRFRRPRPIPRR

Seg: seg
242-257 seg

PHPGVRGPPGRREVPV






List of Contributions

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Analyses

Blast

Blast matches against Reference R-Genes. Show


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