PRGDB00063902 (Zm.948)
| Zm.948 | |
|---|---|
| Gene Type | Putative_R-Genes,_predicted_from_NCBI_UniGene |
| GenBank | 195612391 (EU955908) |
| Gene Class | Unknown |
| Domain Type | Ser-Thr Kinase |
| Gene Species | Zea mays |
DNA Sequence
ACCTCCTCGTCGTCGTCTTGGCCGCAGCAGCCAGCAGGTCGCGGCCATGgcctccgtctccctcctactctgcctcctcctcctTGTGCCACCTCTCGCCGCCGCCCAGCAGCAGATGTCCTCTTTCTCCGCAAACAACTCGACCTGGAGCCCCACGAACAGCAACCGCATCCTCGTGTCGATCAATCGGGAATTCGCCGCCGGGTTCGTGGCGTCGACCTCTGCTCGGGATCGCTACCACTTCGCCGTCTGGGTCGTCGGCTCCAACTCCACCGACAAGGCTTTCATATGGTACGCCCACGACACAGCCAGCTACTCCCCCTACGAGGGCAACGACACCTCCAAGCTCGCCATCGACGCGGCGGGCCGGCTCACCTGGACTGCCGGCGGGAACAACAACGCCACCATCTGGTCGCTCCCGCCCCCCGCCAACACCACCACCACCCCGGCGGTGCTGCAGCTCAACGATACGGGGAGCCTGGTCTACGGGGCAGCCTGGTCGAGCTTCGCCGAGCCCACCAACACGCTCATGCCGGGGCAGGCCATGCCCAAGGGAGGCAACGACACCACGCTCCAGTCCGTCAACGGCCACTACAGGGTCGTCAACTCCGCCACGCTGCAGTTCAACAATTCCATGATGTACGCCAACATCAGCGGCGGCAGCGCTCTGCTCAATCTCACCGCCGACGGCAAGCTCCAGTTCAGCGGCTCGCAGCTCATCGCCTCCGACCAAGGCACCACCAATCGGGTGCGGCGGCTCACGCTTGACGACGACGGCAACCTGCGCCTCTACAGCCTGGTGCCCAAGACCCGGAAGTGGCTCGTGGTGTGGCAGGTCGTGCAGGAGCTCTGCACCATCCGGGGCACCTGCGCCAACGGCAGAATCTGCGTCCCCGTCGGCGTTGACAGCACCACTTGCGTCTGCCCGCCGGGCTACCGCAACGCCACCCCGACGGACCCCTGCACACCCAAGAAAAGGTACAGCGGCAGGGGCGACGACGACACGTTCGTGCGGATGGACTTCGTCTCCTTCTCCGGGGCCGCCAACTCCTCGGCGTCGGACCCCGGGCCGCTGATGACCAAGCTGACGCCGCAGAACCTGGCGGACTGCGAGAGACTCTGCCGGAGTAACTCCACCTGCGTGGCGTTCGGGTACAAGTTCGGCGGCGACCGGACGTGCCTCCAGTTCACCGGGCTGGTGGACGGGTACTGGTCCCCGGCGACGGAGATGTCGACCTACCTGCGGGTGGTGGCGTCGGACAAGGACAGCAACCCGTTCACGGGGATGACGACCATGATCGAGACGGTGTGCCCCGTGCGGCTGTCGCTGCCGGTGCCGCCGAAGGAGTCGCGGACGACGATCCAGAACGTGGCCATCATCACGGCGCTGTTCGTGGTGGAGCTGCTGGCCGGGGTGCTGTCGTTCTGGGCGTTTCTGCGCAAGTACTCCCAGTACCGGGAGATGGCGCGCACGCTGGGGCTGGAGTACCTCCCCGCCGGCGGGCCCCGGCGGTTCTCGCACGCGGAGCTGAAGCAGGCGACCAAGGACTTCTCCAACGTGGTGGGGCGCGGTGCGTACGGGACGGTGTACCGCGGCGAGCTGCCCGACCGGCGCGCCGTGGCGGTGAAGCAGCTGCAAGGCGTGGGCGGCGGCGAGGCAGAGTTCTGGGCGGAGGTGACCATCATCGCGCGAATGCACCACCTCAACCTGGTGCGCATGTGGGGGTTCTGCGCCGAAAAGGAGCAGCGGATGCTGGTGTACGAGTACGTACCCAACGGGTCGCTGGACAAGTACCTGTTCGCCGGCGGAGGCGGAGGCGGTGGGAGCGGCGAGGAGGATTCGTCCTCTGagcagcagcagcagcagcCGCTGCTGGACCTTCACACCCGTTACCGCATCGCGCTGGGTGTTGCCCGCGCCATCGCCTACCTCCACGAGGAGTGCCTGGAGTGGGTTCTCCACTGCGACATCAAGCCCGAGAACATCCTGCTGGAGGACGACTTCTGCCCCAAGGTGTCCGACTTCGGTCTGTCCAAGCTGACGAGCAAGAAGGAGAAGGTGACCATGTCGCGCATCCGCGGCACCCGCGGGTACATGGCGCCCGAGTGGGTGATCCACCGCGAGCCCATCACGGCCAAGGCCGACGTGTACAGCTTCGGCATGGTCCTGCTGGAGATCGTGTCCGGTCGCCGCAACTACGGGTTCCGGCAGGAGTCGGTGGGCAGTGAGGACTGGTACTTCCCCAAGTGGGCGTACGAGAAGGTGTACGTGGAGCGCCGCATCGACGACATCCTGGACCCCCGCATCGCCGCCACCTACGACGACGCCGCCAGCGTCGCCACCGTGGAGCGCATGGTGAAGACGGCCATGTGGTGCCTGCAGGACCGCGCCGAGATGCGGCCGTCTATGGGGAAAGTGTCCAAGATGCTGGAGGGGTCCGTCGAGATCACGGAGCCCGTCAAGCCAACAATCTTCTGCGTTCAGGACGACTGATGACTACACAAGttttttttCTTTCATTTCCAGATGTGAATTCCCAGTGCCGTCTGCCGTCCACCGTCAATAGAATTTTAGTAGCTGTTCACTTCCACTCTTTGtttttttttttGGTTTGCATAGCAAAAGCTATACTAATCCTTAAGTATTGTGAATCCACCGTCCAGGAATCCGCTAAGTTATTGTTCACATAGTCCACCTTGCACCCATTACCAAATTTGTTTCTAGGCCATaaaaaaaaaaaaaaa
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| Zm.948 | translated coding region predicted by ESTScan from UniGene Zm.948 | XPPRRRLGRSSQQVAAMASVSLLLCLLLLVPPLAAAQQQMSSFSANNSTWSPTNSNRILVSINREFAAGFVASTSARDRYHFAVWVVGSNSTDKAFIWYAHDTASYSPYEGNDTSKLAIDAAGRLTWTAGGNNNATIWSLPPPANTTTTPAVLQLNDTGSLVYGAAWSSFAEPTNTLMPGQAMPKGGNDTTLQSVNGHYRVVNSATLQFNNSMMYANISGGSALLNLTADGKLQFSGSQLIASDQGTTNRVRRLTLDDDGNLRLYSLVPKTRKWLVVWQVVQELCTIRGTCANGRICVPVGVDSTTCVCPPGYRNATPTDPCTPKKRYSGRGDDDTFVRMDFVSFSGAANSSASDPGPLMTKLTPQNLADCERLCRSNSTCVAFGYKFGGXPDVPPVHRAGGRVLVPGDGDVDLPAGGGVGQGQQPVHGDDDHDRDGVPRAAVAAGAAEGVADDDPERGHHHGAVRGGAAGRGAVVLGVSAQVLPVPGDGAHAGAGVPPRRRAPAVLAAELKQATKDFSNVVGRGAYGTVYRGELPDRRAVAVKQLQGVGGGEAEFWAEVTIIARMHHLNLVRMWGFCAEKEQRMLVYEYVPNGSLDKYLFAGGGGGGGSGEEDSSSEQQQQQPLLDLHTRYRIALGVARAIAYLHEECLEWVLHCDIKPENILLEDDFCPKVSDFGLSKLTSKKEKVTMSRIRGTRGYMAPEWVIHREPITAKADVYSFGMVLLEIVSGRRNYGFRQESVGSEDWYFPKWAYEKVYVERRIDDILDPRIAATYDDAASVATVERMVKTAMWCLQDRAEMRPSMGKVSKMLEGSVEITEPVKPTIFCVQDD |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| Seg: seg | 10-48 | seg | SSQQVAAMASVSLLLCLLLLVPPLAAAQQQMSSFSANNS |
| HMMPanther: PTHR24420 | 38-831 | FAMILY NOT NAMED,FAMILY NOT NAMED | QQMSSFSANNSTWSPTNSNRILVSINREFAAGFVASTSARDRYHFAVWVVGSNSTDKAFIWYAHDTASYSPYEGNDTSKLAIDAAGRLTWTAGGNNNATIWSLPPPANTTTTPAVLQLNDTGSLVYGAAWSSFAEPTNTLMPGQAMPKGGNDTTLQSVNGHYRVVNSATLQFNNSMMYANISGGSALLNLTADGKLQFSGSQLIASDQGTTNRVRRLTLDDDGNLRLYSLVPKTRKWLVVWQVVQELCTIRGTCANGRICVPVGVDSTTCVCPPGYRNATPTDPCTPKKRYSGRGDDDTFVRMDFVSFSGAANSSASDPGPLMTKLTPQNLADCERLCRSNSTCVAFGYKFGGXPDVPPVHRAGGRVLVPGDGDVDLPAGGGVGQGQQPVHGDDDHDRDGVPRAAVAAGAAEGVADDDPERGHHHGAVRGGAAGRGAVVLGVSAQVLPVPGDGAHAGAGVPPRRRAPAVLAAELKQATKDFSNVVGRGAYGTVYRGELPDRRAVAVKQLQGVGGGEAEFWAEVTIIARMHHLNLVRMWGFCAEKEQRMLVYEYVPNGSLDKYLFAGGGGGGGSGEEDSSSEQQQQQPLLDLHTRYRIALGVARAIAYLHEECLEWVLHCDIKPENILLEDDFCPKVSDFGLSKLTSKKEKVTMSRIRGTRGYMAPEWVIHREPITAKADVYSFGMVLLEIVSGRRNYGFRQESVGSEDWYFPKWAYEKVYVERRIDDILDPRIAATYDDAASVATVERMVKTAMWCLQDRAEMRPSMGKVSKMLEGSVEITEPVKPTIFCVQDD |
| HMMPanther: PTHR24420:SF576 | 38-831 | OS10G0101000 PROTEIN | QQMSSFSANNSTWSPTNSNRILVSINREFAAGFVASTSARDRYHFAVWVVGSNSTDKAFIWYAHDTASYSPYEGNDTSKLAIDAAGRLTWTAGGNNNATIWSLPPPANTTTTPAVLQLNDTGSLVYGAAWSSFAEPTNTLMPGQAMPKGGNDTTLQSVNGHYRVVNSATLQFNNSMMYANISGGSALLNLTADGKLQFSGSQLIASDQGTTNRVRRLTLDDDGNLRLYSLVPKTRKWLVVWQVVQELCTIRGTCANGRICVPVGVDSTTCVCPPGYRNATPTDPCTPKKRYSGRGDDDTFVRMDFVSFSGAANSSASDPGPLMTKLTPQNLADCERLCRSNSTCVAFGYKFGGXPDVPPVHRAGGRVLVPGDGDVDLPAGGGVGQGQQPVHGDDDHDRDGVPRAAVAAGAAEGVADDDPERGHHHGAVRGGAAGRGAVVLGVSAQVLPVPGDGAHAGAGVPPRRRAPAVLAAELKQATKDFSNVVGRGAYGTVYRGELPDRRAVAVKQLQGVGGGEAEFWAEVTIIARMHHLNLVRMWGFCAEKEQRMLVYEYVPNGSLDKYLFAGGGGGGGSGEEDSSSEQQQQQPLLDLHTRYRIALGVARAIAYLHEECLEWVLHCDIKPENILLEDDFCPKVSDFGLSKLTSKKEKVTMSRIRGTRGYMAPEWVIHREPITAKADVYSFGMVLLEIVSGRRNYGFRQESVGSEDWYFPKWAYEKVYVERRIDDILDPRIAATYDDAASVATVERMVKTAMWCLQDRAEMRPSMGKVSKMLEGSVEITEPVKPTIFCVQDD |
| ProfileScan: PS50927 IPR001480
|
44-176 | BULB_LECTIN Bulb-type lectin domain
|
SANNSTWSPTNSNRILVSINREFAAGFVASTSARDRYHFAVWVVGSNSTDKAFIWYAHDTASYSPYEGNDTSKLAIDAAGRLTWTAGGNNNATIWSLPPPANTTTTPAVLQLNDTGSLVYGAAWSSFAEPTNT |
| superfamily: SSF51110 IPR001480
|
95-247 | alpha-D-mannose-specific plant lectins Bulb-type lectin domain
|
AFIWYAHDTASYSPYEGNDTSKLAIDAAGRLTWTAGGNNNATIWSLPPPANTTTTPAVLQLNDTGSLVYGAAWSSFAEPTNTLMPGQAMPKGGNDTTLQSVNGHYRVVNSATLQFNNSMMYANISGGSALLNLTADGKLQFSGSQLIASDQGT |
| HMMPfam: PF01453 IPR001480
|
95-185 | B_lectin Bulb-type lectin domain
|
AFIWYAHDTASYSPYEGNDTSKLAIDAAGRLTWTAGGNNNATIWSLPPPANTTTTPAVLQLNDTGSLVYGAAWSSFAEPTNTLMPGQAMPK |
| Seg: seg | 141-151 | seg | PPPANTTTTPA |
| Gene3D: G3DSA:2.90.10.10 IPR001480
|
220-243 | no description Bulb-type lectin domain
|
GGSALLNLTADGKLQFSGSQLIAS |
| HMMPfam: PF00954 IPR000858
|
247-315 | S_locus_glycop S-locus glycoprotein
|
TTNRVRRLTLDDDGNLRLYSLVPKTRKWLVVWQVVQELCTIRGTCANGRICVPVGVDSTTCVCPPGYRN |
| ProfileScan: PS50026 IPR000742
|
281-319 | EGF_3 Epidermal growth factor-like, type 3
|
VQELCTIRGTCANGRICVPVGVDSTTCVCPPGYRNATPT |
| Seg: seg | 417-457 | seg | GGGVGQGQQPVHGDDDHDRDGVPRAAVAAGAAEGVADDDPE |
| Seg: seg | 458-479 | seg | RGHHHGAVRGGAAGRGAVVLGV |
| superfamily: SSF56112 IPR011009
|
488-819 | Protein kinase-like (PK-like) Protein kinase-like domain
|
GDGAHAGAGVPPRRRAPAVLAAELKQATKDFSNVVGRGAYGTVYRGELPDRRAVAVKQLQGVGGGEAEFWAEVTIIARMHHLNLVRMWGFCAEKEQRMLVYEYVPNGSLDKYLFAGGGGGGGSGEEDSSSEQQQQQPLLDLHTRYRIALGVARAIAYLHEECLEWVLHCDIKPENILLEDDFCPKVSDFGLSKLTSKKEKVTMSRIRGTRGYMAPEWVIHREPITAKADVYSFGMVLLEIVSGRRNYGFRQESVGSEDWYFPKWAYEKVYVERRIDDILDPRIAATYDDAASVATVERMVKTAMWCLQDRAEMRPSMGKVSKMLEGSVEITE |
| Seg: seg | 490-509 | seg | GAHAGAGVPPRRRAPAVLAA |
| Gene3D: G3DSA:3.30.200.20 | 506-576 | no description | VLAAELKQATKDFSNVVGRGAYGTVYRGELPDRRAVAVKQLQGVGGGEAEFWAEVTIIARMHHLNLVRMWG |
| ProfileScan: PS50011 IPR000719
|
516-825 | PROTEIN_KINASE_DOM Protein kinase, catalytic domain
|
KDFSNVVGRGAYGTVYRGELPDRRAVAVKQLQGVGGGEAEFWAEVTIIARMHHLNLVRMWGFCAEKEQRMLVYEYVPNGSLDKYLFAGGGGGGGSGEEDSSSEQQQQQPLLDLHTRYRIALGVARAIAYLHEECLEWVLHCDIKPENILLEDDFCPKVSDFGLSKLTSKKEKVTMSRIRGTRGYMAPEWVIHREPITAKADVYSFGMVLLEIVSGRRNYGFRQESVGSEDWYFPKWAYEKVYVERRIDDILDPRIAATYDDAASVATVERMVKTAMWCLQDRAEMRPSMGKVSKMLEGSVEITEPVKPTI |
| HMMSmart: SM00219 IPR020635
|
516-811 | Tyrosine kinase, catalytic domain Tyrosine-protein kinase, catalytic domain
|
KDFSNVVGRGAYGTVYRGELPDRRAVAVKQLQGVGGGEAEFWAEVTIIARMHHLNLVRMWGFCAEKEQRMLVYEYVPNGSLDKYLFAGGGGGGGSGEEDSSSEQQQQQPLLDLHTRYRIALGVARAIAYLHEECLEWVLHCDIKPENILLEDDFCPKVSDFGLSKLTSKKEKVTMSRIRGTRGYMAPEWVIHREPITAKADVYSFGMVLLEIVSGRRNYGFRQESVGSEDWYFPKWAYEKVYVERRIDDILDPRIAATYDDAASVATVERMVKTAMWCLQDRAEMRPSMGKVSKML |
| HMMSmart: SM00220 IPR002290
|
516-811 | Serine/Threonine protein kinases, catalytic Serine/threonine- / dual-specificity protein kinas
|
KDFSNVVGRGAYGTVYRGELPDRRAVAVKQLQGVGGGEAEFWAEVTIIARMHHLNLVRMWGFCAEKEQRMLVYEYVPNGSLDKYLFAGGGGGGGSGEEDSSSEQQQQQPLLDLHTRYRIALGVARAIAYLHEECLEWVLHCDIKPENILLEDDFCPKVSDFGLSKLTSKKEKVTMSRIRGTRGYMAPEWVIHREPITAKADVYSFGMVLLEIVSGRRNYGFRQESVGSEDWYFPKWAYEKVYVERRIDDILDPRIAATYDDAASVATVERMVKTAMWCLQDRAEMRPSMGKVSKML |
| HMMPfam: PF00069 IPR017442
|
520-808 | Pkinase,Ser-thr Serine/threonine-protein kinase-like domain
|
NVVGRGAYGTVYRGELPDRRAVAVKQLQGVGGGEAEFWAEVTIIARMHHLNLVRMWGFCAEKEQRMLVYEYVPNGSLDKYLFAGGGGGGGSGEEDSSSEQQQQQPLLDLHTRYRIALGVARAIAYLHEECLEWVLHCDIKPENILLEDDFCPKVSDFGLSKLTSKKEKVTMSRIRGTRGYMAPEWVIHREPITAKADVYSFGMVLLEIVSGRRNYGFRQESVGSEDWYFPKWAYEKVYVERRIDDILDPRIAATYDDAASVATVERMVKTAMWCLQDRAEMRPSMGKVS |
| PatternScan: PS00107 IPR017441
|
522-544 | PROTEIN_KINASE_ATP Protein kinase, ATP binding site
|
VGRGAYGTVYRGELPDRRAVAVK |
| Seg: seg | 603-623 | seg | GGGGGGGSGEEDSSSEQQQQQ |
| PatternScan: PS00108 IPR008271
|
653-665 | PROTEIN_KINASE_ST Serine/threonine-protein kinase, active site
|
VLHCDIKPENILL |
| Gene3D: G3DSA:1.10.510.10 | 782-805 | no description | TVERMVKTAMWCLQDRAEMRPSMG |
List of Contributions
There has not been any contribution yet.
