PRGDB00063935 (Zm.5446)
| Zm.5446 | |
|---|---|
| Gene Type | Putative_R-Genes,_predicted_from_NCBI_UniGene |
| GenBank | 195614579 (EU957002) |
| Gene Class | RLP |
| Domain Type | Ser-Thr Kinase, LRR, Receptor-Like Kinase |
| Gene Species | Zea mays |
DNA Sequence
AACCCGCGCACACCACCACCAGTCAGTCCAGTTCCCGCAGTGCACTGCTCTACGCCACAGTACAGCAGCGGCCAGCGGCTGCCTAATCTCTCCAGCCCTTTTTCGTCCCCTAGCCACGCCGCCCACCGCTGCCGCGTCATCCGCCCGTCGTCGCCTGCCCCGCGGCTTCTGCCCCCATTCGCCGCCGAAGCACGCCGAGCCCCGTCCCAGATCGCCGCGGCGCAGGGTTGGAAATCTGTTTGACCACTCAGTGAGTGGCTTCATGTTAAATCCATTTCTGGTTTCAAGATGCTTCACCAATGACATCTGGAAACTGTAATAGTATGTCCTGATCTTCTATGCTTCACCACCTGATCATCAATGGGCTCTTTCCTGAGGAAACAGCCCAGCTACCTCTTCATTTTGATAATTCTGCACCTTGTTGCTCACGAGGCAAGAACACTGAGTTCAGATGGCGAAGCACTTCTTGCCTTCAAAAAAGCAGTTACAAATTCAGATGGAGTCTTCCTAAATTGGCGTGAGCAAGATGCAGACCCCTGCAATTGGAAGGGTGTTAGATGTGATAGTCATAGCAAGAGAGTGATTAATCTGATTCTTGCATACCACAGATTAGTTGGGCCCATACCACCAGAAATTGGAAGGTTAAATCAGTTGCAAACCTTGTCATTGCAGGGGAACAGTTTGTATGGTTCACTCCCTCCTGAACTGGGGAATTGTACCAAGTTGCAACAACTGTATCTACAAGGAAATTACTTAAGTGGATACATCCCTTCAGAATTCGGCGAGCTGGTGGAACTCGAGGCATTGGACTTATCCAGTAATACATTGAGTGGATCTGTTCCACATTCTCTTGATAAGTTGTCCAAACTTACATCATTCAATGTTTCCATGAACTTCCTGACAGGAGCAATACCATCTTCTGGTTCACTTGACAATTTCAATGAGACATCCTTTGTTGGGAACCTTGGTTTATGTGGGAAGCAGATAAACTCGGTGTGCAAAGATGCCCTTCAATCACCATCAAATGGTCTGCAGTCACCTTCCCCAGACGACATGATTAACAAAAGGAACGGGAAGAATTCTACCAGACTTGTTATAAGTGCAGTGGCAACAGTGGGAGCTCTCCTATTGGTGGCTTTAATGTGTTTCTGGGGTTGCTTTCTTTACAAAAATTTTGGAAAGAAAGATATGCGTGGTTTCAGAGTTGAGCTCTGTGGAGGCTCTTCTGTTGTGATGTTCCATGGAGACCTCCCTTACTCCTCAAAAGACATACTCAAGAAGCTAGAGACTATGGATGAAGAAAATATCATTGGAGCAGGAGGCTTCGGAACTGTTTATAAACTTGCAATGGATGATGGCAATGTCTTTGCTTTGAAAAGAATAGTGAAAACAAATGAAGGGCTAGATCGGTTCTTTGATAGAGAACTTGAGATATTGGGAAGTGTTAAACATCGCTATTTGGTCAATCTTCGTGGTTATTGCAACTCTCCTTCATCAAAACTTTTGATATATGATTATCTTCAAGGTGGAAGCCTGGATGAAGTGCTTCATGAAAAGTCTGAACAGTTGGATTGGGATGCACGTATTAACATCATACTTGGAGCTGCAAAAGGCTTGTCTTACTTGCATCACGATTGTTCGCCTCGAATAATACATCGTGATATCAAGTCGAGCAACATCTTGCTTGACGGCAGTTTTGAGGCCCGCGTATCAGACTTTGGACTTGCGAAGCTTTTAGAGGACGAAGAATCACATATCACTACAATAGTTGCAGGAACATTTGGTTATCTTGCGCCAGAGTATATGCAGTTTGGCAGAGCCACCGAGAAGACCGATGTCTACAGTTTTGGGGTTCTGGTACTTGAAATACTCAGCGGAAAGCGGCCTACCGATGCATCCTTCATTGAGAAGGGATTAAACATTGTTGGATGGTTAAATTTTCTGGCTGGCGAGAACCGGGAGAGGGAAATCGTCGATCTGAATTGTGAAGGAGTGCACACCGAGACCTTGGACGCTCTGCTCTCTCTCGCCAAGCAGTGCGTCAGCTCTTTGCCGGAGGAGCGGCCGACGATGCACAGGGTGGTACAGATGCTGGAGTCGGATGTAATTACGCCGTGCCCTAGCGACTTCTACGATTCAGAGTAGCCTCCTGGACGGACAAGCCACAGTGGTGCCGCTAGTTTCCCGTGGAGGCGCATTCCTTTATTCTTTGCAGATATTGTGTAAATGCATTGCCGCGGTGTTTGTTTGGTCTCCTCCAATCGGCTGGTTCAACGGGTGACATTTTTGCGTCTGTGTTTATCTGTCATGCTACAAGTTGGCTATATGCTAATTTAATAAGAGaaaaaaaaaaaaaaaa
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| Zm.5446 | translated coding region predicted by ESTScan from UniGene Zm.5446 | NPRTPPPVSPVPAVHCSTPQYSSGQRLPNLSSPFSSPSHAAHRCRVIRPSSPAPRLLPPFAAEARRAPSQIAAAQGWKSVXPLSEWLHVKSISGFKMLHQXHLETVIVCPDLLCFTTXSSMGSFLRKQPSYLFILIILHLVAHEARTLSSDGEALLAFKKAVTNSDGVFLNWREQDADPCNWKGVRCDSHSKRVINLILAYHRLVGPIPPEIGRLNQLQTLSLQGNSLYGSLPPELGNCTKLQQLYLQGNYLSGYIPSEFGELVELEALDLSSNTLSGSVPHSLDKLSKLTSFNVSMNFLTGAIPSSGSLDNFNETSFVGNLGLCGKQINSVCKDALQSPSNGLQSPSPDDMINKRNGKNSTRLVISAVATVGALLLVALMCFWGCFLYKNFGKKDMRGFRVELCGGSSVVMFHGDLPYSSKDILKKLETMDEENIIGAGGFGTVYKLAMDDGNVFALKRIVKTNEGLDRFFDRELEILGSVKHRYLVNLRGYCNSPSSKLLIYDYLQGGSLDEVLHEKSEQLDWDARINIILGAAKGLSYLHHDCSPRIIHRDIKSSNILLDGSFEARVSDFGLAKLLEDEESHITTIVAGTFGYLAPEYMQFGRATEKTDVYSFGVLVLEILSGKRPTDASFIEKGLNIVGWLNFLAGENREREIVDLNCEGVHTETLDALLSLAKQCVSSLPEERPTMHRVVQMLESDVITPCPSDFYDSEXPPGRTSHSGAASFPWRRIPLFFADIV |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| Seg: seg | 2-14 | seg | PRTPPPVSPVPAV |
| Seg: seg | 31-42 | seg | SSPFSSPSHAAH |
| Seg: seg | 48-69 | seg | RPSSPAPRLLPPFAAEARRAPS |
| HMMPanther: PTHR24420:SF479 | 112-712 | SUBFAMILY NOT NAMED,SUBFAMILY NOT NAMED | LLCFTTXSSMGSFLRKQPSYLFILIILHLVAHEARTLSSDGEALLAFKKAVTNSDGVFLNWREQDADPCNWKGVRCDSHSKRVINLILAYHRLVGPIPPEIGRLNQLQTLSLQGNSLYGSLPPELGNCTKLQQLYLQGNYLSGYIPSEFGELVELEALDLSSNTLSGSVPHSLDKLSKLTSFNVSMNFLTGAIPSSGSLDNFNETSFVGNLGLCGKQINSVCKDALQSPSNGLQSPSPDDMINKRNGKNSTRLVISAVATVGALLLVALMCFWGCFLYKNFGKKDMRGFRVELCGGSSVVMFHGDLPYSSKDILKKLETMDEENIIGAGGFGTVYKLAMDDGNVFALKRIVKTNEGLDRFFDRELEILGSVKHRYLVNLRGYCNSPSSKLLIYDYLQGGSLDEVLHEKSEQLDWDARINIILGAAKGLSYLHHDCSPRIIHRDIKSSNILLDGSFEARVSDFGLAKLLEDEESHITTIVAGTFGYLAPEYMQFGRATEKTDVYSFGVLVLEILSGKRPTDASFIEKGLNIVGWLNFLAGENREREIVDLNCEGVHTETLDALLSLAKQCVSSLPEERPTMHRVVQMLESDVITPCPSDFYD |
| HMMPanther: PTHR24420 | 112-712 | FAMILY NOT NAMED,FAMILY NOT NAMED | LLCFTTXSSMGSFLRKQPSYLFILIILHLVAHEARTLSSDGEALLAFKKAVTNSDGVFLNWREQDADPCNWKGVRCDSHSKRVINLILAYHRLVGPIPPEIGRLNQLQTLSLQGNSLYGSLPPELGNCTKLQQLYLQGNYLSGYIPSEFGELVELEALDLSSNTLSGSVPHSLDKLSKLTSFNVSMNFLTGAIPSSGSLDNFNETSFVGNLGLCGKQINSVCKDALQSPSNGLQSPSPDDMINKRNGKNSTRLVISAVATVGALLLVALMCFWGCFLYKNFGKKDMRGFRVELCGGSSVVMFHGDLPYSSKDILKKLETMDEENIIGAGGFGTVYKLAMDDGNVFALKRIVKTNEGLDRFFDRELEILGSVKHRYLVNLRGYCNSPSSKLLIYDYLQGGSLDEVLHEKSEQLDWDARINIILGAAKGLSYLHHDCSPRIIHRDIKSSNILLDGSFEARVSDFGLAKLLEDEESHITTIVAGTFGYLAPEYMQFGRATEKTDVYSFGVLVLEILSGKRPTDASFIEKGLNIVGWLNFLAGENREREIVDLNCEGVHTETLDALLSLAKQCVSSLPEERPTMHRVVQMLESDVITPCPSDFYD |
| superfamily: SSF52058 | 145-333 | L domain-like,LRR | ARTLSSDGEALLAFKKAVTNSDGVFLNWREQDADPCNWKGVRCDSHSKRVINLILAYHRLVGPIPPEIGRLNQLQTLSLQGNSLYGSLPPELGNCTKLQQLYLQGNYLSGYIPSEFGELVELEALDLSSNTLSGSVPHSLDKLSKLTSFNVSMNFLTGAIPSSGSLDNFNETSFVGNLGLCGKQINSVC |
| Gene3D: G3DSA:3.80.10.10 | 148-309 | no description | LSSDGEALLAFKKAVTNSDGVFLNWREQDADPCNWKGVRCDSHSKRVINLILAYHRLVGPIPPEIGRLNQLQTLSLQGNSLYGSLPPELGNCTKLQQLYLQGNYLSGYIPSEFGELVELEALDLSSNTLSGSVPHSLDKLSKLTSFNVSMNFLTGAIPSSGS |
| HMMPfam: PF08263 IPR013210
|
149-188 | LRRNT_2 Leucine-rich repeat-containing N-terminal domain,
|
SSDGEALLAFKKAVTNSDGVFLNWREQDADPCNWKGVRCD |
| HMMPfam: PF12799 | 217-253 | LRR_4,Leucine Rich repeats (2 copies) | QLQTLSLQGNSLYGSLPPELGNCTKLQQLYLQGNYLS |
| HMMPfam: PF00560 IPR001611
|
266-287 | LRR_1 Leucine-rich repeat
|
LEALDLSSNTLSGSVPHSLDKL |
| Seg: seg | 368-380 | seg | AVATVGALLLVAL |
| superfamily: SSF56112 IPR011009
|
403-721 | Protein kinase-like (PK-like) Protein kinase-like domain
|
ELCGGSSVVMFHGDLPYSSKDILKKLETMDEENIIGAGGFGTVYKLAMDDGNVFALKRIVKTNEGLDRFFDRELEILGSVKHRYLVNLRGYCNSPSSKLLIYDYLQGGSLDEVLHEKSEQLDWDARINIILGAAKGLSYLHHDCSPRIIHRDIKSSNILLDGSFEARVSDFGLAKLLEDEESHITTIVAGTFGYLAPEYMQFGRATEKTDVYSFGVLVLEILSGKRPTDASFIEKGLNIVGWLNFLAGENREREIVDLNCEGVHTETLDALLSLAKQCVSSLPEERPTMHRVVQMLESDVITPCPSDFYDSEXPPGRTS |
| Gene3D: G3DSA:3.30.200.20 | 422-506 | no description | KDILKKLETMDEENIIGAGGFGTVYKLAMDDGNVFALKRIVKTNEGLDRFFDRELEILGSVKHRYLVNLRGYCNSPSSKLLIYDY |
| ProfileScan: PS50011 IPR000719
|
431-703 | PROTEIN_KINASE_DOM Protein kinase, catalytic domain
|
MDEENIIGAGGFGTVYKLAMDDGNVFALKRIVKTNEGLDRFFDRELEILGSVKHRYLVNLRGYCNSPSSKLLIYDYLQGGSLDEVLHEKSEQLDWDARINIILGAAKGLSYLHHDCSPRIIHRDIKSSNILLDGSFEARVSDFGLAKLLEDEESHITTIVAGTFGYLAPEYMQFGRATEKTDVYSFGVLVLEILSGKRPTDASFIEKGLNIVGWLNFLAGENREREIVDLNCEGVHTETLDALLSLAKQCVSSLPEERPTMHRVVQMLESDVI |
| HMMSmart: SM00220 IPR002290
|
431-703 | Serine/Threonine protein kinases, catalytic Serine/threonine- / dual-specificity protein kinas
|
MDEENIIGAGGFGTVYKLAMDDGNVFALKRIVKTNEGLDRFFDRELEILGSVKHRYLVNLRGYCNSPSSKLLIYDYLQGGSLDEVLHEKSEQLDWDARINIILGAAKGLSYLHHDCSPRIIHRDIKSSNILLDGSFEARVSDFGLAKLLEDEESHITTIVAGTFGYLAPEYMQFGRATEKTDVYSFGVLVLEILSGKRPTDASFIEKGLNIVGWLNFLAGENREREIVDLNCEGVHTETLDALLSLAKQCVSSLPEERPTMHRVVQMLESDVI |
| HMMSmart: SM00219 IPR020635
|
431-698 | Tyrosine kinase, catalytic domain Tyrosine-protein kinase, catalytic domain
|
MDEENIIGAGGFGTVYKLAMDDGNVFALKRIVKTNEGLDRFFDRELEILGSVKHRYLVNLRGYCNSPSSKLLIYDYLQGGSLDEVLHEKSEQLDWDARINIILGAAKGLSYLHHDCSPRIIHRDIKSSNILLDGSFEARVSDFGLAKLLEDEESHITTIVAGTFGYLAPEYMQFGRATEKTDVYSFGVLVLEILSGKRPTDASFIEKGLNIVGWLNFLAGENREREIVDLNCEGVHTETLDALLSLAKQCVSSLPEERPTMHRVVQML |
| HMMPfam: PF00069 IPR017442
|
434-696 | Pkinase,Ser-thr Serine/threonine-protein kinase-like domain
|
ENIIGAGGFGTVYKLAMDDGNVFALKRIVKTNEGLDRFFDRELEILGSVKHRYLVNLRGYCNSPSSKLLIYDYLQGGSLDEVLHEKSEQLDWDARINIILGAAKGLSYLHHDCSPRIIHRDIKSSNILLDGSFEARVSDFGLAKLLEDEESHITTIVAGTFGYLAPEYMQFGRATEKTDVYSFGVLVLEILSGKRPTDASFIEKGLNIVGWLNFLAGENREREIVDLNCEGVHTETLDALLSLAKQCVSSLPEERPTMHRVVQ |
| PatternScan: PS00107 IPR017441
|
437-463 | PROTEIN_KINASE_ATP Protein kinase, ATP binding site
|
IGAGGFGTVYKLAMDDGNVFALKRIVK |
| Gene3D: G3DSA:1.10.510.10 | 509-722 | no description | GGSLDEVLHEKSEQLDWDARINIILGAAKGLSYLHHDCSPRIIHRDIKSSNILLDGSFEARVSDFGLAKLLEDEESHITTIVAGTFGYLAPEYMQFGRATEKTDVYSFGVLVLEILSGKRPTDASFIEKGLNIVGWLNFLAGENREREIVDLNCEGVHTETLDALLSLAKQCVSSLPEERPTMHRVVQMLESDVITPCPSDFYDSEXPPGRTSH |
| PatternScan: PS00108 IPR008271
|
550-562 | PROTEIN_KINASE_ST Serine/threonine-protein kinase, active site
|
IIHRDIKSSNILL |
List of Contributions
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