PRGDB00063937 (Zm.5593)
| Zm.5593 | |
|---|---|
| Gene Type | Putative_R-Genes,_predicted_from_NCBI_UniGene |
| GenBank | 195647839 (EU971270) |
| Gene Class | RLP |
| Domain Type | Ser-Thr Kinase, LRR, Receptor-Like Kinase |
| Gene Species | Zea mays |
DNA Sequence
ACCAGTCAGCACTCAGCACACAGAGTCCGCCTCCGCCGCGGCTCCGGCGCCCGCATCCGTCTCAGGAGTCCCTTCTCCCCGCGGGTGGAGACATCTTGATCATTTCTGAGATTAAACTGATGATGCTGATGCTCGTTTAGTTATCTTGGTTTGGAGATATATCAGATATGGGTGATCGGAATCATGGACGCTCTCTCCCTCTACTGCTCTATCTACATCTTTTGCTGCCAATACTTCCGTTTGCTATGGCAGATATAGCCTCCGAGAAGCAAGCACTCCTTGCTTTTGCCTCTGCAGTCTACCATGGCAACAAACTGAATTGGAGCCAAAATATCCCAGTGTGCTCATGGCATGGTGTGACATGCTCACTGGATCGATCGTGTATATTGGCCCTTAGGGTGCCAGGTGCTGGTTTGATTGGTACCATTCCTGCTGATACTCTTGGCAGGCTTGTGTCCCTCCAAGTTTTAAGCATGAGGTCTAACCGTTTGAGTGGAAGCCTTCCGAACGATGTTGTCTCACTTCCTTCTTTACAAGCCATATTTGTTCAGCACAACGAACTGTCAGGAGACTTGCCTCCATTTCTCTCTCCAAACCTTAATACCCTTGATCTCTCTTACAACTCCTTTACAGGACAAATCCCATCAGGTTTGCAGAATCTTACCAAATTGTCTGTCTTGAATTTAGCAGAAAATTCCCTGTCCGGGCCGATTCCGGATCTCAAACTTCCTAGCTTAAGACAGCTAAATCTGAGCAACAATGAACTGAATGGTTCGATTCCTCCCTTTTTCCAAATCTTCTCAAATAGTTCCTTCCTAGGGAACTCTGGATTGTGTGGACCGCCGCTAACTGAATGTTCTTTTCTATCTTCACCAACACCGTCGCAAGTGCCTTCACCACCAAAATTACCAAATCATGAGAAGAAGGCTGGCAATGGCTTGGTAATCGTGGCTGTTGCTGGGAGCTTTGTCATATTTCTGCTAGCTGCTGTGATGTTCACTATGTGCATTTCAAAGAGGAAGGAGAAGAAAGACGAAGCGGGTTACAACGGTAAGGTTACTGATGGTGGAAGGATTGAGAAGCGCAAAGAGGATCTCAGCAGTGGCGTCCAAATGGCGCATAAGAACAAGTTAGTTTTCTTGGAGGGATGCAGTTACAACTTTGACTTGGAGGACTTGCTGAGAGCTTCTGCTGAAGTTCTCGGGAAAGGGAGCTATGGAACTGCCTACAAGGCTATACTCGAGGATGGCTCTACTGTGGTAGTCAAGAGGCTAAAGGATGTCGTGGCAGGGAAGAAAGAATTTGAGCAGCAGATGGAGCTCATAGGGAGGGTAGGTAAACATGCAAACATCGCGCCCTATTCGTGCTTACTACTACTCGAAGGATGAGAAGCTTGTTGTTTATGAGTATATTGGTAGAGGCAGCTTCTCAGCTCTGTTGCATGGTATCAAGGGCGTGTGTGAGAAGACCCCATTAGATTGGAACACAAGGATGAAGATTATACTCGGAACAGCACGCGGCCTCGAGCACATCCATTCAGAAGGCGGCTCCAGGCTCGCACACGGCAACATCAAGTCAACCAACGTTCTGCTCGACGGAGACCACAACCCTTACGTCTCAGACTACGGGCTGAGCTCGTTGACGAGCCTTCCGATCACCACTTCCCGAGCTGTCGCTGGCTACCGAGCTCAGGAGACCTTCGAATCGAGGAAGTTCACCCACAAGTCCGACGTGTACGGTTTCGGCGTCCTCCTCATGGAGACGCTGACGGGCAAGGCCCCGCTTCAGTCACAGGGTCAGGACGACGCCGTCGACCTACCGAGGTGGGTGCATTCGGTGGTCCGCGAGGAGTGGACCGCTGAGGTGTTTGACGTCCAGCTGATGAAGTATCCCAACATAGAAGACGAGCTGGTCCAGATGCTCCGTATCGCCATGGCGTGCACGGCGTGGTCTCCCGACCGGCGTCCGACGATGGCGCAGGTGGTTAGGATGGTGGAGGAGCTCCGGCACTCTGCTTCCGGGAGTCGCGCTCTCTCCGTTGGCAGTCCCAAGGAATCCAGCCCTCTGTCAGCCTGAATTGTGGTTCTGATTCAGAATTCGTGTATCCATGACATCGATGATCGATGGTATCCTGCATGTGGTTCACGGTGCACACGTTGTCTGCCTCGTCAGATACTTCGTACTGCTGTAACTTTGGTTCAATGGAATGCTTAAGAAACAAGGTCGGAATAGGCGAATAGCTATTTTCGTCTTTCaaaaaaaaaaaaaaaaaaaagaaaaaaaaaaaaaaaa
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| Zm.5593 | translated coding region predicted by ESTScan from UniGene Zm.5593 | XQSALSTQSPPPPRLRRPHPSQESLLPAGGDILIISEIKLMMLMLVXLSWFGDISDMGDRNHGRSLPLLLYLHLLLPILPFAMADIASEKQALLAFASAVYHGNKLNWSQNIPVCSWHGVTCSLDRSCILALRVPGAGLIGTIPADTLGRLVSLQVLSMRSNRLSGSLPNDVVSLPSLQAIFVQHNELSGDLPPFLSPNLNTLDLSYNSFTGQIPSGLQNLTKLSVLNLAENSLSGPIPDLKLPSLRQLNLSNNELNGSIPPFFQIFSNSSFLGNSGLCGPPLTECSFLSSPTPSQVPSPPKLPNHEKKAGNGLVIVAVAGSFVIFLLAAVMFTMCISKRKEKKDEAGYNGKVTDGGRIEKRKEDLSSGVQMAHKNKLVFLEGCSYNFDLEDLLRASAEVLGKGSYGTAYKAILEDGSTVVVKRLKDVVAGKKEFEQQMELIGREVNMQTSRPIRAYYYSKDEKLVVYEYIGRGSFSALLHGIKGVCEKTPLDWNTRMKIILGTARGLEHIHSEGGSRLAHGNIKSTNVLLDGDHNPYVSDYGLSSLTSLPITTSRAVAGYRAQETFESRKFTHKSDVYGFGVLLMETLTGKAPLQSQGQDDAVDLPRWVHSVVREEWTAEVFDVQLMKYPNIEDELVQMLRIAMACTAWSPDRRPTMAQVVRMVEELRHSASGSRALSVGSPKESSPLSAXIVVLIQNSCIHDIDDRWYPACGSRCTRCLPRQILRTAVTLVQWNA |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| Seg: seg | 10-20 | seg | PPPPRLRRPHP |
| HMMPanther: PTHR24420 | 48-730 | FAMILY NOT NAMED,FAMILY NOT NAMED | LSWFGDISDMGDRNHGRSLPLLLYLHLLLPILPFAMADIASEKQALLAFASAVYHGNKLNWSQNIPVCSWHGVTCSLDRSCILALRVPGAGLIGTIPADTLGRLVSLQVLSMRSNRLSGSLPNDVVSLPSLQAIFVQHNELSGDLPPFLSPNLNTLDLSYNSFTGQIPSGLQNLTKLSVLNLAENSLSGPIPDLKLPSLRQLNLSNNELNGSIPPFFQIFSNSSFLGNSGLCGPPLTECSFLSSPTPSQVPSPPKLPNHEKKAGNGLVIVAVAGSFVIFLLAAVMFTMCISKRKEKKDEAGYNGKVTDGGRIEKRKEDLSSGVQMAHKNKLVFLEGCSYNFDLEDLLRASAEVLGKGSYGTAYKAILEDGSTVVVKRLKDVVAGKKEFEQQMELIGREVNMQTSRPIRAYYYSKDEKLVVYEYIGRGSFSALLHGIKGVCEKTPLDWNTRMKIILGTARGLEHIHSEGGSRLAHGNIKSTNVLLDGDHNPYVSDYGLSSLTSLPITTSRAVAGYRAQETFESRKFTHKSDVYGFGVLLMETLTGKAPLQSQGQDDAVDLPRWVHSVVREEWTAEVFDVQLMKYPNIEDELVQMLRIAMACTAWSPDRRPTMAQVVRMVEELRHSASGSRALSVGSPKESSPLSAXIVVLIQNSCIHDIDDRWYPACGSRCTRCLPRQILRTAV |
| HMMPanther: PTHR24420:SF547 | 48-730 | SUBFAMILY NOT NAMED | LSWFGDISDMGDRNHGRSLPLLLYLHLLLPILPFAMADIASEKQALLAFASAVYHGNKLNWSQNIPVCSWHGVTCSLDRSCILALRVPGAGLIGTIPADTLGRLVSLQVLSMRSNRLSGSLPNDVVSLPSLQAIFVQHNELSGDLPPFLSPNLNTLDLSYNSFTGQIPSGLQNLTKLSVLNLAENSLSGPIPDLKLPSLRQLNLSNNELNGSIPPFFQIFSNSSFLGNSGLCGPPLTECSFLSSPTPSQVPSPPKLPNHEKKAGNGLVIVAVAGSFVIFLLAAVMFTMCISKRKEKKDEAGYNGKVTDGGRIEKRKEDLSSGVQMAHKNKLVFLEGCSYNFDLEDLLRASAEVLGKGSYGTAYKAILEDGSTVVVKRLKDVVAGKKEFEQQMELIGREVNMQTSRPIRAYYYSKDEKLVVYEYIGRGSFSALLHGIKGVCEKTPLDWNTRMKIILGTARGLEHIHSEGGSRLAHGNIKSTNVLLDGDHNPYVSDYGLSSLTSLPITTSRAVAGYRAQETFESRKFTHKSDVYGFGVLLMETLTGKAPLQSQGQDDAVDLPRWVHSVVREEWTAEVFDVQLMKYPNIEDELVQMLRIAMACTAWSPDRRPTMAQVVRMVEELRHSASGSRALSVGSPKESSPLSAXIVVLIQNSCIHDIDDRWYPACGSRCTRCLPRQILRTAV |
| Seg: seg | 66-80 | seg | LPLLLYLHLLLPILP |
| superfamily: SSF52058 | 80-287 | L domain-like,LRR | PFAMADIASEKQALLAFASAVYHGNKLNWSQNIPVCSWHGVTCSLDRSCILALRVPGAGLIGTIPADTLGRLVSLQVLSMRSNRLSGSLPNDVVSLPSLQAIFVQHNELSGDLPPFLSPNLNTLDLSYNSFTGQIPSGLQNLTKLSVLNLAENSLSGPIPDLKLPSLRQLNLSNNELNGSIPPFFQIFSNSSFLGNSGLCGPPLTECS |
| HMMPfam: PF08263 IPR013210
|
87-123 | LRRNT_2 Leucine-rich repeat-containing N-terminal domain,
|
ASEKQALLAFASAVYHGNKLNWSQNIPVCSWHGVTCS |
| Gene3D: G3DSA:3.80.10.10 | 90-269 | no description | KQALLAFASAVYHGNKLNWSQNIPVCSWHGVTCSLDRSCILALRVPGAGLIGTIPADTLGRLVSLQVLSMRSNRLSGSLPNDVVSLPSLQAIFVQHNELSGDLPPFLSPNLNTLDLSYNSFTGQIPSGLQNLTKLSVLNLAENSLSGPIPDLKLPSLRQLNLSNNELNGSIPPFFQIFSN |
| HMMPfam: PF00560 IPR001611
|
153-171 | LRR_1 Leucine-rich repeat
|
SLQVLSMRSNRLSGSLPND |
| HMMPfam: PF13855 | 198-256 | LRR_8,Leucine rich repeat | PNLNTLDLSYNSFTGQIPSGLQNLTKLSVLNLAENSLSGPIPDLKLPSLRQLNLSNNEL |
| FPrintScan: PR00019 | 200-213 | LEURICHRPT,Leucine-rich repeat signature | LNTLDLSYNSFTGQ |
| FPrintScan: PR00019 | 243-256 | LEURICHRPT,Leucine-rich repeat signature | LPSLRQLNLSNNEL |
| Seg: seg | 290-304 | seg | SSPTPSQVPSPPKLP |
| Gene3D: G3DSA:3.30.200.20 | 328-470 | no description | LAAVMFTMCISKRKEKKDEAGYNGKVTDGGRIEKRKEDLSSGVQMAHKNKLVFLEGCSYNFDLEDLLRASAEVLGKGSYGTAYKAILEDGSTVVVKRLKDVVAGKKEFEQQMELIGREVNMQTSRPIRAYYYSKDEKLVVYEY |
| superfamily: SSF56112 IPR011009
|
363-673 | Protein kinase-like (PK-like) Protein kinase-like domain
|
KEDLSSGVQMAHKNKLVFLEGCSYNFDLEDLLRASAEVLGKGSYGTAYKAILEDGSTVVVKRLKDVVAGKKEFEQQMELIGREVNMQTSRPIRAYYYSKDEKLVVYEYIGRGSFSALLHGIKGVCEKTPLDWNTRMKIILGTARGLEHIHSEGGSRLAHGNIKSTNVLLDGDHNPYVSDYGLSSLTSLPITTSRAVAGYRAQETFESRKFTHKSDVYGFGVLLMETLTGKAPLQSQGQDDAVDLPRWVHSVVREEWTAEVFDVQLMKYPNIEDELVQMLRIAMACTAWSPDRRPTMAQVVRMVEELRHSAS |
| ProfileScan: PS50011 IPR000719
|
395-673 | PROTEIN_KINASE_DOM Protein kinase, catalytic domain
|
RASAEVLGKGSYGTAYKAILEDGSTVVVKRLKDVVAGKKEFEQQMELIGREVNMQTSRPIRAYYYSKDEKLVVYEYIGRGSFSALLHGIKGVCEKTPLDWNTRMKIILGTARGLEHIHSEGGSRLAHGNIKSTNVLLDGDHNPYVSDYGLSSLTSLPITTSRAVAGYRAQETFESRKFTHKSDVYGFGVLLMETLTGKAPLQSQGQDDAVDLPRWVHSVVREEWTAEVFDVQLMKYPNIEDELVQMLRIAMACTAWSPDRRPTMAQVVRMVEELRHSAS |
| HMMSmart: SM00220 IPR002290
|
395-665 | Serine/Threonine protein kinases, catalytic Serine/threonine- / dual-specificity protein kinas
|
RASAEVLGKGSYGTAYKAILEDGSTVVVKRLKDVVAGKKEFEQQMELIGREVNMQTSRPIRAYYYSKDEKLVVYEYIGRGSFSALLHGIKGVCEKTPLDWNTRMKIILGTARGLEHIHSEGGSRLAHGNIKSTNVLLDGDHNPYVSDYGLSSLTSLPITTSRAVAGYRAQETFESRKFTHKSDVYGFGVLLMETLTGKAPLQSQGQDDAVDLPRWVHSVVREEWTAEVFDVQLMKYPNIEDELVQMLRIAMACTAWSPDRRPTMAQVVRMV |
| HMMSmart: SM00219 IPR020635
|
395-665 | Tyrosine kinase, catalytic domain Tyrosine-protein kinase, catalytic domain
|
RASAEVLGKGSYGTAYKAILEDGSTVVVKRLKDVVAGKKEFEQQMELIGREVNMQTSRPIRAYYYSKDEKLVVYEYIGRGSFSALLHGIKGVCEKTPLDWNTRMKIILGTARGLEHIHSEGGSRLAHGNIKSTNVLLDGDHNPYVSDYGLSSLTSLPITTSRAVAGYRAQETFESRKFTHKSDVYGFGVLLMETLTGKAPLQSQGQDDAVDLPRWVHSVVREEWTAEVFDVQLMKYPNIEDELVQMLRIAMACTAWSPDRRPTMAQVVRMV |
| HMMPfam: PF00069 IPR017442
|
399-663 | Pkinase,Ser-thr Serine/threonine-protein kinase-like domain
|
EVLGKGSYGTAYKAILEDGSTVVVKRLKDVVAGKKEFEQQMELIGREVNMQTSRPIRAYYYSKDEKLVVYEYIGRGSFSALLHGIKGVCEKTPLDWNTRMKIILGTARGLEHIHSEGGSRLAHGNIKSTNVLLDGDHNPYVSDYGLSSLTSLPITTSRAVAGYRAQETFESRKFTHKSDVYGFGVLLMETLTGKAPLQSQGQDDAVDLPRWVHSVVREEWTAEVFDVQLMKYPNIEDELVQMLRIAMACTAWSPDRRPTMAQVVR |
| PatternScan: PS00107 IPR017441
|
401-432 | PROTEIN_KINASE_ATP Protein kinase, ATP binding site
|
LGKGSYGTAYKAILEDGSTVVVKRLKDVVAGK |
| Gene3D: G3DSA:1.10.510.10 | 474-673 | no description | GSFSALLHGIKGVCEKTPLDWNTRMKIILGTARGLEHIHSEGGSRLAHGNIKSTNVLLDGDHNPYVSDYGLSSLTSLPITTSRAVAGYRAQETFESRKFTHKSDVYGFGVLLMETLTGKAPLQSQGQDDAVDLPRWVHSVVREEWTAEVFDVQLMKYPNIEDELVQMLRIAMACTAWSPDRRPTMAQVVRMVEELRHSAS |
| Seg: seg | 544-555 | seg | LSSLTSLPITTS |
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