PRGDB00064006 (Zm.18004)
Zm.18004 | |
---|---|
Gene Type | Putative_R-Genes,_predicted_from_NCBI_UniGene |
GenBank | 195640191 (EU967446) |
Gene Class | Unknown |
Domain Type | |
Gene Species | Zea mays |
DNA Sequence
ACGGGAAAGGAGTACGGAGTACCGGAGACATCGTCAACGCCATGGCCGGAGGAGGTGCAACGGTGTGCGTGACCGGAGCCGGCGGGTTCATCGCCTCGTGGGTAGTGAAGCTCCTGCTCTCCCGCGGGTACACCGTGCACGGCACCGTCCGCCACCTCAGTGACGAGAAGACAGGCCACCTGAAGCGCCTGGAGAATGCTGCCGGAAACCTTAGGATCTTCAAGGCTGACCTGCTGGACTACGACGCCATGGCAGCTGCGGTCGTCGGGTGCCAGGGGGTTTTCCATGTGGCCACTCCTGTGCCTTCGGAGGACCTGACTGACCCAGAGCTACAAATGCTGGGTCCTGCTGTTACCGGCACCACGAATGTGCTCAAAGCTGCCTCCAGCGCGAACGTCCAGCGAGTGGTGGTGGTGTCGTCCATGGTTGCCGTCGAGATCAGCCCCAAAGATTGGCCTGAAGGTAAGGTCCGAGATGAGAGGTGCTGGTCAGACCGAGAGTTCTGCAGGAGCATTGAGAGCTGGTACCCGGTGGCTAAGATCATCTCAGAGGAGGCGGCGCTGGCGTACGGGCAGCAAACCGGGCTCGACGTGGTGACTATCAATCCAGGGTTGGTGTTCGGCCCCATGCTGCAGCCGACGGTCAACACGACCATCCAGTTCCTCATCTACTTCCTCAAAGGAGGCCCCGACCCGGTGAAGAACAAGCTCTGGCACATCGTCGACGTCCGCGATGTGGCCGACGCCATGCTGCTGCTCTACGAGGTGCCTGAAGCGACCGGCAGACACATCTGCGCGCCTCATGTTATCAGTGCCCGCGACCTGCTGGATCTGCTGAAGAGCATGTACCCTGACTACCCTTGCATTGCCAACGAGAGCATACTTGACAGAGACCACCCAGCGCCGATGACCTCTGACAAGCTGAAGAAGATCGGGTGGAGCTGCCGACCGCTGGAGGAGACGATCGTGGACACCGTCGAGTGCTGCCTGCGGGCTGGATTTCTGGACGACGTGGGTGGGGAGACTTCCTGTCGCTTCCCTCCTCTTTTAAACCAGATCTAGCCTCGGCGAAAGCATGAATTGTGRTTGCCTATGCTCTTGCTTATGTTACCGTGGACGACGAGCGTCAGCTTTTAAATAAACGTCATTGCATGCTGTTGTATTTCTTATATTACTGTGGACAAGCATCGATCAGAGCTTTTAAATTGTTAGGATCACAGGTGAAAAAGGAGACAGAGTTTAACGTGGAAAAAACTCTCTAATTTGGAGGAGAAAAAATCACGGGAAAACAGaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaammcaaaaaaaaaaaaaaaaR
Protein sequences
Name | Description | Sequence |
---|---|---|
Zm.18004 | translated coding region predicted by ESTScan from UniGene Zm.18004 | XGKGVRSTGDIVNAMAGGGATVCVTGAGGFIASWVVKLLLSRGYTVHGTVRHLSDEKTGHLKRLENAAGNLRIFKADLLDYDAMAAAVVGCQGVFHVATPVPSEDLTDPELQMLGPAVTGTTNVLKAASSANVQRVVVVSSMVAVEISPKDWPEGKVRDERCWSDREFCRSIESWYPVAKIISEEAALAYGQQTGLDVVTINPGLVFGPMLQPTVNTTIQFLIYFLKGGPDPVKNKLWHIVDVRDVADAMLLLYEVPEATGRHICAPHVISARDLLDLLKSMYPDYPCIANESILDRDHPAPMTSDKLKKIGWSCRPLEETIVDTVECCLRAGFLDDVGGETSCRFPPLLNQI |
Domains
Domain | Start-End | Description | Sequence
|
---|---|---|---|
HMMPanther: PTHR10366:SF74 | 5-338 | SUBFAMILY NOT NAMED,SUBFAMILY NOT NAMED | VRSTGDIVNAMAGGGATVCVTGAGGFIASWVVKLLLSRGYTVHGTVRHLSDEKTGHLKRLENAAGNLRIFKADLLDYDAMAAAVVGCQGVFHVATPVPSEDLTDPELQMLGPAVTGTTNVLKAASSANVQRVVVVSSMVAVEISPKDWPEGKVRDERCWSDREFCRSIESWYPVAKIISEEAALAYGQQTGLDVVTINPGLVFGPMLQPTVNTTIQFLIYFLKGGPDPVKNKLWHIVDVRDVADAMLLLYEVPEATGRHICAPHVISARDLLDLLKSMYPDYPCIANESILDRDHPAPMTSDKLKKIGWSCRPLEETIVDTVECCLRAGFLDDV |
HMMPanther: PTHR10366 | 5-338 | FAMILY NOT NAMED,NAD DEPENDENT EPIMERASE/DEHYDRATASE | VRSTGDIVNAMAGGGATVCVTGAGGFIASWVVKLLLSRGYTVHGTVRHLSDEKTGHLKRLENAAGNLRIFKADLLDYDAMAAAVVGCQGVFHVATPVPSEDLTDPELQMLGPAVTGTTNVLKAASSANVQRVVVVSSMVAVEISPKDWPEGKVRDERCWSDREFCRSIESWYPVAKIISEEAALAYGQQTGLDVVTINPGLVFGPMLQPTVNTTIQFLIYFLKGGPDPVKNKLWHIVDVRDVADAMLLLYEVPEATGRHICAPHVISARDLLDLLKSMYPDYPCIANESILDRDHPAPMTSDKLKKIGWSCRPLEETIVDTVECCLRAGFLDDV |
Seg: seg | 16-29 | seg | AGGGATVCVTGAGG |
superfamily: SSF51735 | 19-331 | NAD(P)-binding Rossmann-fold domains | GATVCVTGAGGFIASWVVKLLLSRGYTVHGTVRHLSDEKTGHLKRLENAAGNLRIFKADLLDYDAMAAAVVGCQGVFHVATPVPSEDLTDPELQMLGPAVTGTTNVLKAASSANVQRVVVVSSMVAVEISPKDWPEGKVRDERCWSDREFCRSIESWYPVAKIISEEAALAYGQQTGLDVVTINPGLVFGPMLQPTVNTTIQFLIYFLKGGPDPVKNKLWHIVDVRDVADAMLLLYEVPEATGRHICAPHVISARDLLDLLKSMYPDYPCIANESILDRDHPAPMTSDKLKKIGWSCRPLEETIVDTVECCLR |
Gene3D: G3DSA:3.40.50.720 IPR016040
|
20-283 | no description NAD(P)-binding domain
|
ATVCVTGAGGFIASWVVKLLLSRGYTVHGTVRHLSDEKTGHLKRLENAAGNLRIFKADLLDYDAMAAAVVGCQGVFHVATPVPSEDLTDPELQMLGPAVTGTTNVLKAASSANVQRVVVVSSMVAVEISPKDWPEGKVRDERCWSDREFCRSIESWYPVAKIISEEAALAYGQQTGLDVVTINPGLVFGPMLQPTVNTTIQFLIYFLKGGPDPVKNKLWHIVDVRDVADAMLLLYEVPEATGRHICAPHVISARDLLDLLKSMY |
HMMPfam: PF01370 IPR001509
|
22-264 | Epimerase NAD-dependent epimerase/dehydratase
|
VCVTGAGGFIASWVVKLLLSRGYTVHGTVRHLSDEKTGHLKRLENAAGNLRIFKADLLDYDAMAAAVVGCQGVFHVATPVPSEDLTDPELQMLGPAVTGTTNVLKAASSANVQRVVVVSSMVAVEISPKDWPEGKVRDERCWSDREFCRSIESWYPVAKIISEEAALAYGQQTGLDVVTINPGLVFGPMLQPTVNTTIQFLIYFLKGGPDPVKNKLWHIVDVRDVADAMLLLYEVPEATGRHI |
Seg: seg | 76-87 | seg | ADLLDYDAMAAA |
Seg: seg | 127-145 | seg | AASSANVQRVVVVSSMVAV |
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