PRGDB00064006 (Zm.18004)

Zm.18004
Gene Type	Putative_R-Genes,_predicted_from_NCBI_UniGene
GenBank	195640191 (EU967446)
Gene Class	Unknown
Domain Type
Gene Species	Zea mays
	Comment?

Zea mays clone 303165 dihydroflavonol-4-reductase mRNA, complete cds

DNA Sequence

ACGGGAAAGGAGTACGGAGTACCGGAGACATCGTCAACGCCATGGCCGGAGGAGGTGCAACGGTGTGCGTGACCGGAGCCGGCGGGTTCATCGCCTCGTGGGTAGTGAAGCTCCTGCTCTCCCGCGGGTACACCGTGCACGGCACCGTCCGCCACCTCAGTGACGAGAAGACAGGCCACCTGAAGCGCCTGGAGAATGCTGCCGGAAACCTTAGGATCTTCAAGGCTGACCTGCTGGACTACGACGCCATGGCAGCTGCGGTCGTCGGGTGCCAGGGGGTTTTCCATGTGGCCACTCCTGTGCCTTCGGAGGACCTGACTGACCCAGAGCTACAAATGCTGGGTCCTGCTGTTACCGGCACCACGAATGTGCTCAAAGCTGCCTCCAGCGCGAACGTCCAGCGAGTGGTGGTGGTGTCGTCCATGGTTGCCGTCGAGATCAGCCCCAAAGATTGGCCTGAAGGTAAGGTCCGAGATGAGAGGTGCTGGTCAGACCGAGAGTTCTGCAGGAGCATTGAGAGCTGGTACCCGGTGGCTAAGATCATCTCAGAGGAGGCGGCGCTGGCGTACGGGCAGCAAACCGGGCTCGACGTGGTGACTATCAATCCAGGGTTGGTGTTCGGCCCCATGCTGCAGCCGACGGTCAACACGACCATCCAGTTCCTCATCTACTTCCTCAAAGGAGGCCCCGACCCGGTGAAGAACAAGCTCTGGCACATCGTCGACGTCCGCGATGTGGCCGACGCCATGCTGCTGCTCTACGAGGTGCCTGAAGCGACCGGCAGACACATCTGCGCGCCTCATGTTATCAGTGCCCGCGACCTGCTGGATCTGCTGAAGAGCATGTACCCTGACTACCCTTGCATTGCCAACGAGAGCATACTTGACAGAGACCACCCAGCGCCGATGACCTCTGACAAGCTGAAGAAGATCGGGTGGAGCTGCCGACCGCTGGAGGAGACGATCGTGGACACCGTCGAGTGCTGCCTGCGGGCTGGATTTCTGGACGACGTGGGTGGGGAGACTTCCTGTCGCTTCCCTCCTCTTTTAAACCAGATCTAGCCTCGGCGAAAGCATGAATTGTGRTTGCCTATGCTCTTGCTTATGTTACCGTGGACGACGAGCGTCAGCTTTTAAATAAACGTCATTGCATGCTGTTGTATTTCTTATATTACTGTGGACAAGCATCGATCAGAGCTTTTAAATTGTTAGGATCACAGGTGAAAAAGGAGACAGAGTTTAACGTGGAAAAAACTCTCTAATTTGGAGGAGAAAAAATCACGGGAAAACAGaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaammcaaaaaaaaaaaaaaaaR

Protein sequences

Name	Description	Sequence
Zm.18004	translated coding region predicted by ESTScan from UniGene Zm.18004	XGKGVRSTGDIVNAMAGGGATVCVTGAGGFIASWVVKLLLSRGYTVHGTVRHLSDEKTGHLKRLENAAGNLRIFKADLLDYDAMAAAVVGCQGVFHVATPVPSEDLTDPELQMLGPAVTGTTNVLKAASSANVQRVVVVSSMVAVEISPKDWPEGKVRDERCWSDREFCRSIESWYPVAKIISEEAALAYGQQTGLDVVTINPGLVFGPMLQPTVNTTIQFLIYFLKGGPDPVKNKLWHIVDVRDVADAMLLLYEVPEATGRHICAPHVISARDLLDLLKSMYPDYPCIANESILDRDHPAPMTSDKLKKIGWSCRPLEETIVDTVECCLRAGFLDDVGGETSCRFPPLLNQI

Domains

Domain	Start-End	Description	Sequence
HMMPanther: PTHR10366:SF74	5-338	SUBFAMILY NOT NAMED,SUBFAMILY NOT NAMED	VRSTGDIVNAMAGGGATVCVTGAGGFIASWVVKLLLSRGYTVHGTVRHLSDEKTGHLKRLENAAGNLRIFKADLLDYDAMAAAVVGCQGVFHVATPVPSEDLTDPELQMLGPAVTGTTNVLKAASSANVQRVVVVSSMVAVEISPKDWPEGKVRDERCWSDREFCRSIESWYPVAKIISEEAALAYGQQTGLDVVTINPGLVFGPMLQPTVNTTIQFLIYFLKGGPDPVKNKLWHIVDVRDVADAMLLLYEVPEATGRHICAPHVISARDLLDLLKSMYPDYPCIANESILDRDHPAPMTSDKLKKIGWSCRPLEETIVDTVECCLRAGFLDDV
HMMPanther: PTHR10366	5-338	FAMILY NOT NAMED,NAD DEPENDENT EPIMERASE/DEHYDRATASE	VRSTGDIVNAMAGGGATVCVTGAGGFIASWVVKLLLSRGYTVHGTVRHLSDEKTGHLKRLENAAGNLRIFKADLLDYDAMAAAVVGCQGVFHVATPVPSEDLTDPELQMLGPAVTGTTNVLKAASSANVQRVVVVSSMVAVEISPKDWPEGKVRDERCWSDREFCRSIESWYPVAKIISEEAALAYGQQTGLDVVTINPGLVFGPMLQPTVNTTIQFLIYFLKGGPDPVKNKLWHIVDVRDVADAMLLLYEVPEATGRHICAPHVISARDLLDLLKSMYPDYPCIANESILDRDHPAPMTSDKLKKIGWSCRPLEETIVDTVECCLRAGFLDDV
Seg: seg	16-29	seg	AGGGATVCVTGAGG
superfamily: SSF51735	19-331	NAD(P)-binding Rossmann-fold domains	GATVCVTGAGGFIASWVVKLLLSRGYTVHGTVRHLSDEKTGHLKRLENAAGNLRIFKADLLDYDAMAAAVVGCQGVFHVATPVPSEDLTDPELQMLGPAVTGTTNVLKAASSANVQRVVVVSSMVAVEISPKDWPEGKVRDERCWSDREFCRSIESWYPVAKIISEEAALAYGQQTGLDVVTINPGLVFGPMLQPTVNTTIQFLIYFLKGGPDPVKNKLWHIVDVRDVADAMLLLYEVPEATGRHICAPHVISARDLLDLLKSMYPDYPCIANESILDRDHPAPMTSDKLKKIGWSCRPLEETIVDTVECCLR
Gene3D: G3DSA:3.40.50.720 IPR016040	20-283	no description NAD(P)-binding domain	ATVCVTGAGGFIASWVVKLLLSRGYTVHGTVRHLSDEKTGHLKRLENAAGNLRIFKADLLDYDAMAAAVVGCQGVFHVATPVPSEDLTDPELQMLGPAVTGTTNVLKAASSANVQRVVVVSSMVAVEISPKDWPEGKVRDERCWSDREFCRSIESWYPVAKIISEEAALAYGQQTGLDVVTINPGLVFGPMLQPTVNTTIQFLIYFLKGGPDPVKNKLWHIVDVRDVADAMLLLYEVPEATGRHICAPHVISARDLLDLLKSMY
HMMPfam: PF01370 IPR001509	22-264	Epimerase NAD-dependent epimerase/dehydratase	VCVTGAGGFIASWVVKLLLSRGYTVHGTVRHLSDEKTGHLKRLENAAGNLRIFKADLLDYDAMAAAVVGCQGVFHVATPVPSEDLTDPELQMLGPAVTGTTNVLKAASSANVQRVVVVSSMVAVEISPKDWPEGKVRDERCWSDREFCRSIESWYPVAKIISEEAALAYGQQTGLDVVTINPGLVFGPMLQPTVNTTIQFLIYFLKGGPDPVKNKLWHIVDVRDVADAMLLLYEVPEATGRHI
Seg: seg	76-87	seg	ADLLDYDAMAAA
Seg: seg	127-145	seg	AASSANVQRVVVVSSMVAV

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Analyses

Blast

Blast matches against Reference R-Genes. Show