PRGDB00064008 (Zm.18052)
| Zm.18052 | |
|---|---|
| Gene Type | Putative_R-Genes,_predicted_from_NCBI_UniGene |
| GenBank | 194694397 (BT036278) |
| Gene Class | Unknown |
| Domain Type | |
| Gene Species | Zea mays |
DNA Sequence
GTCCGTCGGTCGTGATCGGTACCAATGGAAGGCGCAGCGGGGATCAGGACGAGGCCGGCGGTGTGCGTGACCGGCGCGGGCGGCTTCGTGGCCTCGTGGCTCGTCGAGCGCCTCCTCGCCGGCGGCCGATACATGGTCCATGGCACCGTCCGTGATCCGGGCGACGCCAAGAACGCGCACCTGGCGGCGATGGACGGCGCCGCGGACCGGCTGCGCCTGTTCAGGGCCGAATTGCTCGACTACGGCAGCGTGGCGGCGGCCATCGCCGGCTGCGACGGCGTCTTCCACGTCGCGTCCCCAGTCCCCATGACCTATCCAATCGGTGACCCCGAGGTAGAGCTGCTCGCTCCGGCCGTGACGGGCACCAAGAACGTCCTGAAGGCGTGCTCGGAGGCCAAGGTGAAGAGGGTCGTCGTGGTGTCGTCGGTGGCCGCCGTGATGGTGAACCCTGGCTGGCCCCAGAACGAGGCCATGGACGAGGCTTGTTGGTCCGACGTCGAATTCTGCAGAACCACTCAGAACTGGTACTGTCTCTCCAAGACACTCGCGGAGCTGGAAGCGCTTGATTACGCAAAGAGGAGTGGACTAGACGTGGTGTCCGTCTGCCCGTCGCTGGTGATCGGGCCCTTGCTGCAGTCGACGGTGAACGCAAGCAGCTCCGTCATAGTCGATTGCTTGAAAGGAGATCGTGAGGTGAAGCTGAAGCTGAGGAACTTCGTGGACGTCCGCGACGTCGCCGACGCTCTGCTCCTGGTGTACGAGACTCCGGAGGCGTCTGGACGGTACATCTGCGACGCAAATGCAAGGCAGATGTCTGAGGTCGTAGCGCTGCTCAAGGACTGGTACCCTGCCTACAGTCATGCTGCCACCAAGTAAGCAGAAACATACTGCAGAAGCTATATGCTTGTGTTGTGTTAGTCAAGCTATCAGTGCTTGATGAATCGCAAGCTGCTAGTGCATAGTAGGTTGCATTGTGATCAAGGGCAAAGTGCATGGCACAGGTTCGTGCAGGTGAGCGATGAGCCTTTGTTCAGCTCCAAGAAGCTGCAGGCGCTGGGCTGGAAATTCCGGACTCTGGAGGAGAGCCTCAGGGACAGCGTTGAATCCTTCAAGGCGGCAGGTGTCCTGGTGGATTGAACAGAACAGGCAGCGCCCTATTCCTGGATGACCTTCGCATTTTGTAAACCGAAGTTGCTGTCTTGTGCAAGAGCATCCCGACGTCCTCGGATAATGTAATaaaaaaagcaaaaGCGACAAAGTTTGCCGTGTATTATAGCGGCATTGTT
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| Zm.18052 | translated coding region predicted by ESTScan from UniGene Zm.18052 | MEGAAGIRTRPAVCVTGAGGFVASWLVERLLAGGRYMVHGTVRDPGDAKNAHLAAMDGAADRLRLFRAELLDYGSVAAAIAGCDGVFHVASPVPMTYPIGDPEVELLAPAVTGTKNVLKACSEAKVKRVVVVSSVAAVMVNPGWPQNEAMDEACWSDVEFCRTTQNWYCLSKTLAELEALDYAKRSGLDVVSVCPSLVIGPLLQSTVNASSSVIVDCLKGDREVKLKLRNFVDVRDVADALLLVYETPEASGRYICDANARQMSEVVALLKDWYPAYSHAATKXAETYCRSYMLVLCXSSYQCLMNRKLLVHSRLHCDQGQSAWHRFVQVSDEPLFSSKKLQALGWKFRTLEESLRDSVESFKAAGVLVD |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| superfamily: SSF51735 | 11-364 | NAD(P)-binding Rossmann-fold domains | PAVCVTGAGGFVASWLVERLLAGGRYMVHGTVRDPGDAKNAHLAAMDGAADRLRLFRAELLDYGSVAAAIAGCDGVFHVASPVPMTYPIGDPEVELLAPAVTGTKNVLKACSEAKVKRVVVVSSVAAVMVNPGWPQNEAMDEACWSDVEFCRTTQNWYCLSKTLAELEALDYAKRSGLDVVSVCPSLVIGPLLQSTVNASSSVIVDCLKGDREVKLKLRNFVDVRDVADALLLVYETPEASGRYICDANARQMSEVVALLKDWYPAYSHAATKXAETYCRSYMLVLCXSSYQCLMNRKLLVHSRLHCDQGQSAWHRFVQVSDEPLFSSKKLQALGWKFRTLEESLRDSVESFKA |
| Gene3D: G3DSA:3.40.50.720 IPR016040
|
13-237 | no description NAD(P)-binding domain
|
VCVTGAGGFVASWLVERLLAGGRYMVHGTVRDPGDAKNAHLAAMDGAADRLRLFRAELLDYGSVAAAIAGCDGVFHVASPVPMTYPIGDPEVELLAPAVTGTKNVLKACSEAKVKRVVVVSSVAAVMVNPGWPQNEAMDEACWSDVEFCRTTQNWYCLSKTLAELEALDYAKRSGLDVVSVCPSLVIGPLLQSTVNASSSVIVDCLKGDREVKLKLRNFVDVRDV |
| HMMPfam: PF01370 IPR001509
|
13-254 | Epimerase NAD-dependent epimerase/dehydratase
|
VCVTGAGGFVASWLVERLLAGGRYMVHGTVRDPGDAKNAHLAAMDGAADRLRLFRAELLDYGSVAAAIAGCDGVFHVASPVPMTYPIGDPEVELLAPAVTGTKNVLKACSEAKVKRVVVVSSVAAVMVNPGWPQNEAMDEACWSDVEFCRTTQNWYCLSKTLAELEALDYAKRSGLDVVSVCPSLVIGPLLQSTVNASSSVIVDCLKGDREVKLKLRNFVDVRDVADALLLVYETPEASGRY |
| HMMPanther: PTHR10366:SF74 | 13-368 | SUBFAMILY NOT NAMED,SUBFAMILY NOT NAMED | VCVTGAGGFVASWLVERLLAGGRYMVHGTVRDPGDAKNAHLAAMDGAADRLRLFRAELLDYGSVAAAIAGCDGVFHVASPVPMTYPIGDPEVELLAPAVTGTKNVLKACSEAKVKRVVVVSSVAAVMVNPGWPQNEAMDEACWSDVEFCRTTQNWYCLSKTLAELEALDYAKRSGLDVVSVCPSLVIGPLLQSTVNASSSVIVDCLKGDREVKLKLRNFVDVRDVADALLLVYETPEASGRYICDANARQMSEVVALLKDWYPAYSHAATKXAETYCRSYMLVLCXSSYQCLMNRKLLVHSRLHCDQGQSAWHRFVQVSDEPLFSSKKLQALGWKFRTLEESLRDSVESFKAAGVL |
| HMMPanther: PTHR10366 | 13-368 | FAMILY NOT NAMED,NAD DEPENDENT EPIMERASE/DEHYDRATASE | VCVTGAGGFVASWLVERLLAGGRYMVHGTVRDPGDAKNAHLAAMDGAADRLRLFRAELLDYGSVAAAIAGCDGVFHVASPVPMTYPIGDPEVELLAPAVTGTKNVLKACSEAKVKRVVVVSSVAAVMVNPGWPQNEAMDEACWSDVEFCRTTQNWYCLSKTLAELEALDYAKRSGLDVVSVCPSLVIGPLLQSTVNASSSVIVDCLKGDREVKLKLRNFVDVRDVADALLLVYETPEASGRYICDANARQMSEVVALLKDWYPAYSHAATKXAETYCRSYMLVLCXSSYQCLMNRKLLVHSRLHCDQGQSAWHRFVQVSDEPLFSSKKLQALGWKFRTLEESLRDSVESFKAAGVL |
| Seg: seg | 124-140 | seg | AKVKRVVVVSSVAAVMV |
List of Contributions
There has not been any contribution yet.
