PRGDB00064012 (Zm.18542)
| Zm.18542 | |
|---|---|
| Gene Type | Putative_R-Genes,_predicted_from_NCBI_UniGene |
| GenBank | 195614363 (EU956894) |
| Gene Class | RLK |
| Domain Type | Ser-Thr Kinase, Receptor-Like Kinase |
| Gene Species | Zea mays |
DNA Sequence
ACACATCGCCACGCCACTGATTGGCTCGCGATTATGTGATTCTTGAACCTTCTTGCCATGGGGATGTCTGCAGCGTCTCATCTCTGTGCTTCTTCGTCCCTGCGAGCTTTAACCGTGTTGTTTGTGTTGGCAGCTCTTGTTTCAGATGTAGAGGGGCGACATCATCGTCATGTCTGTCCTCATTTCTCCTGTGGTGGTTTAAGCAATATATCGTATCCATTTCGTCGGCAAGGTGATCCATCTGGGTGCGGTGTCCAATCGTATGAGCTGGTTTGCACGGATACAGATGCTACAATTCGCATCGGCAGTGGAACATACAAGGTGCTTAGCATCAACTCCACATATTCTTACTTCTGGGTTGTTGATGCCGACCTGGACATCCAGAGCAGTTGCCCCCTTCCCCAGTGGGATTATTACCCTGCTCGTTGGATCAATCGCAACTCATATCGTTGGAGGATTGAGTTCAGCCATGATTATTTCTATCCTCCTCCTTTTTATATTTATTCGGGGTGGGCTATCTTTGTGAATTGTTCTCAGCCAATAGAGAACAATGATGCTGATATATATGAGCCGGTGTCTTGCTTGAGCAATTCTTCTTTCATCTACTTGGTAACTGACTACTGGTATGTTTTTGCTGGGAATCTGGAGCCTTCATGCGGTTACCTAGCCATGACTCCTTTGGGTGGTCCAGGCATGCCGGTGCCCATGAATACAAGCTATCCAGATGTTGTTAAGTTCATGAGGAGTGGATTTGCCCTTCGATTTCCCTTTTCGTATGGTGACAACATCAGAGAATGTCTCGCAAACAATATGCATACTTTCCATAAAGAACCAAGAAATAGTACAGGCATCAGGCAACAGATCTTGGACATTCTTACGTTCGAGACATTATGGTTTTGTGTTATTGAACAACTTGGATCAACTAATAATGGTGTCAAGTCTGTTCTCATCGACATCATCCAACAAATACCATATGTTCTTTCCAGTCTGAAATCTGCACATGTTATTTGCAGGTTCGTATTGATGCCGCTGGCGGTATTTGTCTTCCTAGCCTATAAATACTGGAAAACACGGATAACAATAGATGCAGTTGAGAAGTTCCTGCGAATGCACCATATGCTCGTTCCGATGAGATATGCATACACAAACATCATTGCTATCACCGCCCATTTCAGAGACAAGCTCGGACAAGGAGGCTACGGTACTGTATACAAAGGGGNNNNNCAACCAGGTGAAGTTCATGTTGCTGTCAAGATGCTGGGCAACTCAAACTGTAACGGAGAAGAGTTCATCAGTGAGGTGGCCACCATTGGAAAGATCCACCATGTCAATGTTGTGCGCCTCATTGGATTTTGCTCCGAGGAAAATATCAGGGCACTTATCTATGAGTTCATGCCCCGTGGATCTCTCGATAAGTACATCTTCTCGTCGGAGAAGACATTCTCATGGGACAAACTCAATGAGATCGCTCTGGGCATTGCTAGAGGTCTTAACTACCTGCATCACGGGTGTGATATGCAAATAGTACACTTTGACATCAAGCCACACAACATCCTTCTTGATAGCAACTTTGTTCCAAAAGTTGCTGATTTTGGGCTAGCCAAACTGTTCCCAAGAGATGACAGTTTCGTGCCACTGAGCGCTATGCGAGGAACGATAGGCTATATAGCTCCAGAGATGGTATCTCGAAGCTTTGGTGTCATCTCTAGCAAATCCGATGTGTACAGCTTTGGGATGCTACTATTGGAGATGACGGGCGGGCGAAGAAACGCAGATCCTCATGCAGGAAGCTCTAGTCAAGCATACTACCCATCCTTGGTGTACAGGCAGCTGAGCCAAGGTGATGCGAACAGGATCAGTGAAGGTGTTGATATGCACGAGTTAGAGAAGAAGCTATGTATAATTGGGCTTTGGTGCATCCAGATGAAGCCGCAAGATCGGCCGACGATGAGCGAGGTCATAGAGATGCTTGAAGCTGGTGTCGATGGCATCCAAATGCCTCCAAGGCCATACTTTTGTGATGAAGAGGGTGACAGTTCTTACTCTATAATCTCTGAACTGGATACAATAGAAGagtagtagtagtagtaAAATGCACTTGTGTCTATGTGCTCTTAATGTATCAGACTATTAAGATTGCAAGGTGGCCATAGGCTAAGGTACTGGTTGTATGCTTTTATTGAGTGTGTGGTAATGTGTTTTGATATAAAATACCTCCATGAACCTTTTTTTACAAAGAACTCAAGAACATTTTGTTTGCCTaaaaaaaaaaaaaaaaa
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| Zm.18542 | translated coding region predicted by ESTScan from UniGene Zm.18542 | THRHATDWLAIMXFLNLLAMGMSAASHLCASSSLRALTVLFVLAALVSDVEGRHHRHVCPHFSCGGLSNISYPFRRQGDPSGCGVQSYELVCTDTDATIRIGSGTYKVLSINSTYSYFWVVDADLDIQSSCPLPQWDYYPARWINRNSYRWRIEFSHDYFYPPPFYIYSGWAIFVNCSQPIENNDADIYEPVSCLSNSSFIYLVTDYWYVFAGNLEPSCGYLAMTPLGGPGMPVPMNTSYPDVVKFMRSGFALRFPFSYGDNIRECLANNMHTFHKEPRNSTGIRQQILDILTFETLWFCVIEQLGSTNNGVKSVLIDIIQQIPYVLSSLKSAHVICRFVLMPLAVFVFLAYKYWKTRITIDAVEKFLRMHHMLVPMRYAYTNIIAITAHFRDKLGQGGYGTVYKGXXQPGEVHVAVKMLGNSNCNGEEFISEVATIGKIHHVNVVRLIGFCSEENIRALIYEFMPRGSLDKYIFSSEKTFSWDKLNEIALGIARGLNYLHHGCDMQIVHFDIKPHNILLDSNFVPKVADFGLAKLFPRDDSFVPLSAMRGTIGYIAPEMVSRSFGVISSKSDVYSFGMLLLEMTGGRRNADPHAGSSSQAYYPSLVYRQLSQGDANRISEGVDMHELEKKLCIIGLWCIQMKPQDRPTMSEVIEMLEAGVDGIQMPPRPYFCDEEGDSSYSIISELDTIEEXXXXXNALVSMCS |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| Seg: seg | 23-47 | seg | SAASHLCASSSLRALTVLFVLAALV |
| HMMPfam: PF13947 IPR025287
|
59-123 | GUB_WAK_bind Wall-associated receptor kinase galacturonan-bindi
|
CPHFSCGGLSNISYPFRRQGDPSGCGVQSYELVCTDTDATIRIGSGTYKVLSINSTYSYFWVVDA |
| HMMPanther: PTHR24420:SF441 | 335-703 | SUBFAMILY NOT NAMED,SUBFAMILY NOT NAMED | VICRFVLMPLAVFVFLAYKYWKTRITIDAVEKFLRMHHMLVPMRYAYTNIIAITAHFRDKLGQGGYGTVYKGXXQPGEVHVAVKMLGNSNCNGEEFISEVATIGKIHHVNVVRLIGFCSEENIRALIYEFMPRGSLDKYIFSSEKTFSWDKLNEIALGIARGLNYLHHGCDMQIVHFDIKPHNILLDSNFVPKVADFGLAKLFPRDDSFVPLSAMRGTIGYIAPEMVSRSFGVISSKSDVYSFGMLLLEMTGGRRNADPHAGSSSQAYYPSLVYRQLSQGDANRISEGVDMHELEKKLCIIGLWCIQMKPQDRPTMSEVIEMLEAGVDGIQMPPRPYFCDEEGDSSYSIISELDTIEEXXXXXNALVSM |
| HMMPanther: PTHR24420 | 335-703 | FAMILY NOT NAMED,FAMILY NOT NAMED | VICRFVLMPLAVFVFLAYKYWKTRITIDAVEKFLRMHHMLVPMRYAYTNIIAITAHFRDKLGQGGYGTVYKGXXQPGEVHVAVKMLGNSNCNGEEFISEVATIGKIHHVNVVRLIGFCSEENIRALIYEFMPRGSLDKYIFSSEKTFSWDKLNEIALGIARGLNYLHHGCDMQIVHFDIKPHNILLDSNFVPKVADFGLAKLFPRDDSFVPLSAMRGTIGYIAPEMVSRSFGVISSKSDVYSFGMLLLEMTGGRRNADPHAGSSSQAYYPSLVYRQLSQGDANRISEGVDMHELEKKLCIIGLWCIQMKPQDRPTMSEVIEMLEAGVDGIQMPPRPYFCDEEGDSSYSIISELDTIEEXXXXXNALVSM |
| superfamily: SSF56112 IPR011009
|
361-657 | Protein kinase-like (PK-like) Protein kinase-like domain
|
IDAVEKFLRMHHMLVPMRYAYTNIIAITAHFRDKLGQGGYGTVYKGXXQPGEVHVAVKMLGNSNCNGEEFISEVATIGKIHHVNVVRLIGFCSEENIRALIYEFMPRGSLDKYIFSSEKTFSWDKLNEIALGIARGLNYLHHGCDMQIVHFDIKPHNILLDSNFVPKVADFGLAKLFPRDDSFVPLSAMRGTIGYIAPEMVSRSFGVISSKSDVYSFGMLLLEMTGGRRNADPHAGSSSQAYYPSLVYRQLSQGDANRISEGVDMHELEKKLCIIGLWCIQMKPQDRPTMSEVIEML |
| Gene3D: G3DSA:3.30.200.20 | 380-465 | no description | AYTNIIAITAHFRDKLGQGGYGTVYKGXXQPGEVHVAVKMLGNSNCNGEEFISEVATIGKIHHVNVVRLIGFCSEENIRALIYEFM |
| ProfileScan: PS50011 IPR000719
|
389-672 | PROTEIN_KINASE_DOM Protein kinase, catalytic domain
|
AHFRDKLGQGGYGTVYKGXXQPGEVHVAVKMLGNSNCNGEEFISEVATIGKIHHVNVVRLIGFCSEENIRALIYEFMPRGSLDKYIFSSEKTFSWDKLNEIALGIARGLNYLHHGCDMQIVHFDIKPHNILLDSNFVPKVADFGLAKLFPRDDSFVPLSAMRGTIGYIAPEMVSRSFGVISSKSDVYSFGMLLLEMTGGRRNADPHAGSSSQAYYPSLVYRQLSQGDANRISEGVDMHELEKKLCIIGLWCIQMKPQDRPTMSEVIEMLEAGVDGIQMPPRPYF |
| HMMSmart: SM00219 IPR020635
|
389-657 | Tyrosine kinase, catalytic domain Tyrosine-protein kinase, catalytic domain
|
AHFRDKLGQGGYGTVYKGXXQPGEVHVAVKMLGNSNCNGEEFISEVATIGKIHHVNVVRLIGFCSEENIRALIYEFMPRGSLDKYIFSSEKTFSWDKLNEIALGIARGLNYLHHGCDMQIVHFDIKPHNILLDSNFVPKVADFGLAKLFPRDDSFVPLSAMRGTIGYIAPEMVSRSFGVISSKSDVYSFGMLLLEMTGGRRNADPHAGSSSQAYYPSLVYRQLSQGDANRISEGVDMHELEKKLCIIGLWCIQMKPQDRPTMSEVIEML |
| HMMSmart: SM00220 IPR002290
|
389-657 | Serine/Threonine protein kinases, catalytic Serine/threonine- / dual-specificity protein kinas
|
AHFRDKLGQGGYGTVYKGXXQPGEVHVAVKMLGNSNCNGEEFISEVATIGKIHHVNVVRLIGFCSEENIRALIYEFMPRGSLDKYIFSSEKTFSWDKLNEIALGIARGLNYLHHGCDMQIVHFDIKPHNILLDSNFVPKVADFGLAKLFPRDDSFVPLSAMRGTIGYIAPEMVSRSFGVISSKSDVYSFGMLLLEMTGGRRNADPHAGSSSQAYYPSLVYRQLSQGDANRISEGVDMHELEKKLCIIGLWCIQMKPQDRPTMSEVIEML |
| HMMPfam: PF00069 IPR017442
|
392-655 | Pkinase,Ser-thr Serine/threonine-protein kinase-like domain
|
RDKLGQGGYGTVYKGXXQPGEVHVAVKMLGNSNCNGEEFISEVATIGKIHHVNVVRLIGFCSEENIRALIYEFMPRGSLDKYIFSSEKTFSWDKLNEIALGIARGLNYLHHGCDMQIVHFDIKPHNILLDSNFVPKVADFGLAKLFPRDDSFVPLSAMRGTIGYIAPEMVSRSFGVISSKSDVYSFGMLLLEMTGGRRNADPHAGSSSQAYYPSLVYRQLSQGDANRISEGVDMHELEKKLCIIGLWCIQMKPQDRPTMSEVIE |
| PatternScan: PS00107 IPR017441
|
395-418 | PROTEIN_KINASE_ATP Protein kinase, ATP binding site
|
LGQGGYGTVYKGXXQPGEVHVAVK |
| Gene3D: G3DSA:1.10.510.10 | 468-659 | no description | GSLDKYIFSSEKTFSWDKLNEIALGIARGLNYLHHGCDMQIVHFDIKPHNILLDSNFVPKVADFGLAKLFPRDDSFVPLSAMRGTIGYIAPEMVSRSFGVISSKSDVYSFGMLLLEMTGGRRNADPHAGSSSQAYYPSLVYRQLSQGDANRISEGVDMHELEKKLCIIGLWCIQMKPQDRPTMSEVIEMLEA |
| PatternScan: PS00108 IPR008271
|
508-520 | PROTEIN_KINASE_ST Serine/threonine-protein kinase, active site
|
IVHFDIKPHNILL |
| Seg: seg | 691-697 | seg | EEXXXXX |
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