PRGDB00064023 (Zm.20008)

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Zm.20008
Gene Type Putative_R-Genes,_predicted_from_NCBI_UniGene
GenBank 54652809 (BT018028)
Gene Class Unknown
Domain Type
Gene Species Zea mays

Comment?

Zea mays clone EL01N0529H05.c mRNA sequence

DNA Sequence

GCACCCGTGTGACAACGAGAGCAAGAAAGTATCAAAACCCGAGACCTTTGGAGGCGGTGGGGAAGAGCGTGTGCGTGACCGGCGCGGGCGGCTTCATCGCGTCATGTCTGGTGAAGCTCCTCCTCTGCCGGGGCCAATACAAGGTCCGCGGCACCGTGCGCGACCCTGGTGCTAGCAAGAATGCTCATCTCAAGGTGCTGGAAGGGGCTGGGGAAAGGTTGCAGCTTGTCAAGGCTGATTTGTTGGACTACAGCAGTGTTGCATCAGCAATTGCCGGCTGTGAGGGTGTCTTCCATGTAGCTAGCCCTGTCCCTTCCGGTCGGTCCTCCAACCCTGAGGTGGAGGTCATAGGTCCTGCTGTAACAGGTACAATCAATGTGTTAAAGGCTTGCTATGAGGCAAAAGTTGGGCGAGTTGTGGTGGTCTCTTCATGTGCAGCTGTCTATGCTAATCCTAATTATCCAAAGGGTAAGGTCTTTGACGAAGACTGCTGGTCAGATGAAGCTTACTGCAGGAAGAACGAGGATTGGTATTTTGTTTCCAAGACACTGGCGGAACGAGAGGCTTTTGTTTATGCAGCAAAAACAGGGCTGGATGTTGTAACTATTTGCCCGTCGTTAGTATTTGGACCCTTGATGCAGCCTACAGTAAATTCGAGCAGCAAAATCATCCTTAAATATTTCACAGGAGATCGCGAGACTGTTGAAAACATACTCAGAAATATGGTGGATGTTCGTGATGTTGCTGACGCTCTTCTTCTGGCTTACGAAAAGCCAGAAGCGTCTGGACGATACATCTGCAGTTCACATGCAATAAAAAGTGCTGATATGATAAACATACTGAAGACCTTGTATCCATCTTACCCTTATCCCAAAAATTTTGTGGAAGATGATGTCAACTCTGTATACAGCTCTGAGAAACTGCAGAAGCTGGGGTGGAGCTTCAAGCCTATAGAGGAATCCCTCCGCGACACTGTTGAATTGTACAAAGCATTTGGCATCCTGAATTGAACATCCAGCTACGACTGTTCCATCTGCTGTTTTTGCCTCCGAACTCTTTCTGAATAATAATGTATGTAGGCAGTGAAACAGCATTGCCAGCAGGTTAATCCTGGCATCATGCTGGAGCAGCCCCGCAGTTCTCTCttttttttttCATCCCCAATACTATCTAGTGGTTCAGGACCAAATAAGTAGGCCCCGTGCTGACTGGTTTATGGCTTGTGGCCTATTGTCGCTGCTAAAACTAGAAGCGTTCGTACTATCTTGCACTGCTGCACTTGATTGCTCATCATTCTGGTGCAATTTGATTTGAGCTTCTGAAAGACGCAAAAAAA


Protein sequences

Name Description Sequence
Zm.20008 translated coding region predicted by ESTScan from UniGene Zm.20008

XTRVTTRARKYQNPRPLEAVGKSVCVTGAGGFIASCLVKLLLCRGQYKVRGTVRDPGASKNAHLKVLEGAGERLQLVKADLLDYSSVASAIAGCEGVFHVASPVPSGRSSNPEVEVIGPAVTGTINVLKACYEAKVGRVVVVSSCAAVYANPNYPKGKVFDEDCWSDEAYCRKNEDWYFVSKTLAEREAFVYAAKTGLDVVTICPSLVFGPLMQPTVNSSSKIILKYFTGDRETVENILRNMVDVRDVADALLLAYEKPEASGRYICSSHAIKSADMINILKTLYPSYPYPKNFVEDDVNSVYSSEKLQKLGWSFKPIEESLRDTVELYKAFGILN

Domains

Domain Start-End Description Sequence

HMMPanther: PTHR10366
11-336 FAMILY NOT NAMED,NAD DEPENDENT EPIMERASE/DEHYDRATASE

YQNPRPLEAVGKSVCVTGAGGFIASCLVKLLLCRGQYKVRGTVRDPGASKNAHLKVLEGAGERLQLVKADLLDYSSVASAIAGCEGVFHVASPVPSGRSSNPEVEVIGPAVTGTINVLKACYEAKVGRVVVVSSCAAVYANPNYPKGKVFDEDCWSDEAYCRKNEDWYFVSKTLAEREAFVYAAKTGLDVVTICPSLVFGPLMQPTVNSSSKIILKYFTGDRETVENILRNMVDVRDVADALLLAYEKPEASGRYICSSHAIKSADMINILKTLYPSYPYPKNFVEDDVNSVYSSEKLQKLGWSFKPIEESLRDTVELYKAFGILN

HMMPanther: PTHR10366:SF74
11-336 SUBFAMILY NOT NAMED,SUBFAMILY NOT NAMED

YQNPRPLEAVGKSVCVTGAGGFIASCLVKLLLCRGQYKVRGTVRDPGASKNAHLKVLEGAGERLQLVKADLLDYSSVASAIAGCEGVFHVASPVPSGRSSNPEVEVIGPAVTGTINVLKACYEAKVGRVVVVSSCAAVYANPNYPKGKVFDEDCWSDEAYCRKNEDWYFVSKTLAEREAFVYAAKTGLDVVTICPSLVFGPLMQPTVNSSSKIILKYFTGDRETVENILRNMVDVRDVADALLLAYEKPEASGRYICSSHAIKSADMINILKTLYPSYPYPKNFVEDDVNSVYSSEKLQKLGWSFKPIEESLRDTVELYKAFGILN

superfamily: SSF51735
21-331 NAD(P)-binding Rossmann-fold domains

GKSVCVTGAGGFIASCLVKLLLCRGQYKVRGTVRDPGASKNAHLKVLEGAGERLQLVKADLLDYSSVASAIAGCEGVFHVASPVPSGRSSNPEVEVIGPAVTGTINVLKACYEAKVGRVVVVSSCAAVYANPNYPKGKVFDEDCWSDEAYCRKNEDWYFVSKTLAEREAFVYAAKTGLDVVTICPSLVFGPLMQPTVNSSSKIILKYFTGDRETVENILRNMVDVRDVADALLLAYEKPEASGRYICSSHAIKSADMINILKTLYPSYPYPKNFVEDDVNSVYSSEKLQKLGWSFKPIEESLRDTVELYKA

Gene3D: G3DSA:3.40.50.720
IPR016040
22-284 no description
NAD(P)-binding domain

KSVCVTGAGGFIASCLVKLLLCRGQYKVRGTVRDPGASKNAHLKVLEGAGERLQLVKADLLDYSSVASAIAGCEGVFHVASPVPSGRSSNPEVEVIGPAVTGTINVLKACYEAKVGRVVVVSSCAAVYANPNYPKGKVFDEDCWSDEAYCRKNEDWYFVSKTLAEREAFVYAAKTGLDVVTICPSLVFGPLMQPTVNSSSKIILKYFTGDRETVENILRNMVDVRDVADALLLAYEKPEASGRYICSSHAIKSADMINILKTL

HMMPfam: PF01370
IPR001509
24-265 Epimerase
NAD-dependent epimerase/dehydratase

VCVTGAGGFIASCLVKLLLCRGQYKVRGTVRDPGASKNAHLKVLEGAGERLQLVKADLLDYSSVASAIAGCEGVFHVASPVPSGRSSNPEVEVIGPAVTGTINVLKACYEAKVGRVVVVSSCAAVYANPNYPKGKVFDEDCWSDEAYCRKNEDWYFVSKTLAEREAFVYAAKTGLDVVTICPSLVFGPLMQPTVNSSSKIILKYFTGDRETVENILRNMVDVRDVADALLLAYEKPEASGRY

Seg: seg
134-150 seg

AKVGRVVVVSSCAAVYA






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Analyses

Blast

Blast matches against Reference R-Genes. Show


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