PRGDB00064230 (Zm.40890)

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Zm.40890
Gene Type Putative_R-Genes,_predicted_from_NCBI_UniGene
GenBank 195627165 (EU963295)
Gene Class Unknown
Domain Type
Gene Species Zea mays

Comment?

Zea mays clone 260601 mRNA sequence

DNA Sequence

GACATGCCCGATCCCGACGCCCTGGCGGCCGCGGTCGCCGTCGCCGGGTGCGAGGGGGTCGCCTCTCCTGTGTCCTGTGCCCGTAGATAAGGTCCTCAATCCTGAGGAAAGTTCCGGTCCAATCTCTTCCAATTGACACCGTGTTGGTGTTGTTCTGACTTCTGTTGAATAGGATGAACCTGCATTTACGGAAAAAATTCTCCCTTTGATGACCCAACCCCTGTGAAAACAAAACAACCCTCAGAAGATGTCCAAACTCCAAACACACGAAAAGGGGAGCGTGCGACGACTTTCCGCCGACCTGCAGAGCTGAATGTGCATTTTTGGTCGTTTGCATCCTTCGCCGCCGGCTCTTTCTGCGTGTTCTTCTTCTTGTCGATTTCCGTCTTGTGTATATACTATATACTATGCTGCTGTGCTGGGTTACAAGACAAGCAAGTGGCAACTGGCAATATACGGACAAGCCGTGGCGGGTATATACGGACGAAGAGGAGGACCGGAGGAGGAAGCTTCAGTGAGGCCCTGGACTGCAGCGGGATGGCGTCGCCGCCGCCACCACGCGTGTGCGTAACCGGTGGCGGCGGGTACGTCGCCTCATGGCTCGTCAAGCTCCTGCTCTCCCGCGGCTACGCCGTGCACGCCACTGTCCGCGACCCAAGTGATCCCAAGAACGCCCACCTGCAACAGCTGGACGGGGCCCGGGAGAGGTTGCGCCTGTTCAAGGCCGACGTGCTCGACCGCGACGCCCTGGCGACCGCGGTCGTCGCGTGCGAGGGCGTCTTCCACGTCGCCTCCCCTGTGCCCGCGGACAAAGTCCTCGATCCCGAGTCCGAGGTGCTGTCTCCTGCTGTCAAGGGCACTCTGAACGTCCTCCAGGCCTGCTCGGCAAACAACGTTCAGAAAGTTGTCGTGGTTTCGTCCACGGCTGCTGTTTACTTTAACCCGAGCTGGCCCCAAGGTAGAACCAAAGACGAGAGTTGCTGGTCAGACAGAGATTTATGCATTAAGAACGAGAACTGGTACTGTGCTGCCAAGACGATTGCTGAAGAAACTGCAGTGGAGTATGGAGAGAAGAACGGRCTGGTTGTTGTCACGGTCTGCCCTTGTATCGTTTTAGGCCCACTCCTGCAAGCCGCTGATCAATGCCAGCAGCGAATTACTCATCTACATTATAAAAGGAGGTCCTAGGGTGCTGAAAAACCTCCCCTGGAACATAGTCGACGTCCGTGACGTAGCTGATGCTTTGCTCCTAGTATACGAGAAAGTGGAATCATCCGGGAGATACATCTGTGCGCCTAATCGGATCAGCACAAACAACATGGTGAACTTGTTTAAAAAGTCCTACCCTAACTACAATTATGTGAACTGCGACAACAAGGACTATGAATCTGAAATCTCACCAGTTACATCGGAGAAACTTAAGAGTCTAGGCTGGAACCCAAGGACAATGGAGAAAACTTTGTTGGACAACATTGAGTATTTCGAGAAGGCAGGGTTTTTGCGTGATGCAGAGGGTTATCCTTGTCGTCTACTACCTCATATTTTTCATTTCGCTTCTGACTAATGAAATAGATTCTGTAAAACAATTACGACAACTACTATAACTGTCTTTGGACAATTCaaaaaaaaaaaaaaaa


Protein sequences

Name Description Sequence
Zm.40890 translated coding region predicted by ESTScan from UniGene Zm.40890

MASPPPPRVCVTGGGGYVASWLVKLLLSRGYAVHATVRDPSDPKNAHLQQLDGARERLRLFKADVLDRDALATAVVACEGVFHVASPVPADKVLDPESEVLSPAVKGTLNVLQACSANNVQKVVVVSSTAAVYFNPSWPQGRTKDESCWSDRDLCIKNENWYCAAKTIAEETAVEYGEKNGLVVVTVCPCIVLGPLLQAADQCQQQLLIYIIKGGPRVLKNLPWNIVDVRDVADALLLVYEKVESSGRYICAPNRISTNNMVNLFKKSYPNYNYVNCDNKDYESEISPVTSEKLKSLGWNPRTMEKTLLDNIEYFEKAGFLRDAEGYPCRLLPHIFHFASD

Domains

Domain Start-End Description Sequence

superfamily: SSF51735
1-317 NAD(P)-binding Rossmann-fold domains

MASPPPPRVCVTGGGGYVASWLVKLLLSRGYAVHATVRDPSDPKNAHLQQLDGARERLRLFKADVLDRDALATAVVACEGVFHVASPVPADKVLDPESEVLSPAVKGTLNVLQACSANNVQKVVVVSSTAAVYFNPSWPQGRTKDESCWSDRDLCIKNENWYCAAKTIAEETAVEYGEKNGLVVVTVCPCIVLGPLLQAADQCQQQLLIYIIKGGPRVLKNLPWNIVDVRDVADALLLVYEKVESSGRYICAPNRISTNNMVNLFKKSYPNYNYVNCDNKDYESEISPVTSEKLKSLGWNPRTMEKTLLDNIEYFEK

Gene3D: G3DSA:3.40.50.720
IPR016040
8-202 no description
NAD(P)-binding domain

RVCVTGGGGYVASWLVKLLLSRGYAVHATVRDPSDPKNAHLQQLDGARERLRLFKADVLDRDALATAVVACEGVFHVASPVPADKVLDPESEVLSPAVKGTLNVLQACSANNVQKVVVVSSTAAVYFNPSWPQGRTKDESCWSDRDLCIKNENWYCAAKTIAEETAVEYGEKNGLVVVTVCPCIVLGPLLQAADQ

HMMPanther: PTHR10366
8-341 FAMILY NOT NAMED,NAD DEPENDENT EPIMERASE/DEHYDRATASE

RVCVTGGGGYVASWLVKLLLSRGYAVHATVRDPSDPKNAHLQQLDGARERLRLFKADVLDRDALATAVVACEGVFHVASPVPADKVLDPESEVLSPAVKGTLNVLQACSANNVQKVVVVSSTAAVYFNPSWPQGRTKDESCWSDRDLCIKNENWYCAAKTIAEETAVEYGEKNGLVVVTVCPCIVLGPLLQAADQCQQQLLIYIIKGGPRVLKNLPWNIVDVRDVADALLLVYEKVESSGRYICAPNRISTNNMVNLFKKSYPNYNYVNCDNKDYESEISPVTSEKLKSLGWNPRTMEKTLLDNIEYFEKAGFLRDAEGYPCRLLPHIFHFASD

HMMPanther: PTHR10366:SF74
8-341 SUBFAMILY NOT NAMED,SUBFAMILY NOT NAMED

RVCVTGGGGYVASWLVKLLLSRGYAVHATVRDPSDPKNAHLQQLDGARERLRLFKADVLDRDALATAVVACEGVFHVASPVPADKVLDPESEVLSPAVKGTLNVLQACSANNVQKVVVVSSTAAVYFNPSWPQGRTKDESCWSDRDLCIKNENWYCAAKTIAEETAVEYGEKNGLVVVTVCPCIVLGPLLQAADQCQQQLLIYIIKGGPRVLKNLPWNIVDVRDVADALLLVYEKVESSGRYICAPNRISTNNMVNLFKKSYPNYNYVNCDNKDYESEISPVTSEKLKSLGWNPRTMEKTLLDNIEYFEKAGFLRDAEGYPCRLLPHIFHFASD

HMMPfam: PF01370
IPR001509
9-250 Epimerase
NAD-dependent epimerase/dehydratase

VCVTGGGGYVASWLVKLLLSRGYAVHATVRDPSDPKNAHLQQLDGARERLRLFKADVLDRDALATAVVACEGVFHVASPVPADKVLDPESEVLSPAVKGTLNVLQACSANNVQKVVVVSSTAAVYFNPSWPQGRTKDESCWSDRDLCIKNENWYCAAKTIAEETAVEYGEKNGLVVVTVCPCIVLGPLLQAADQCQQQLLIYIIKGGPRVLKNLPWNIVDVRDVADALLLVYEKVESSGRYI

Seg: seg
196-208 seg

LLQAADQCQQQLL






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Analyses

Blast

Blast matches against Reference R-Genes. Show


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