PRGDB00064609 (Zm.140543)
| Zm.140543 | |
|---|---|
| Gene Type | Putative_R-Genes,_predicted_from_NCBI_UniGene |
| GenBank | 148984035 (EE029537) |
| Gene Class | RLP |
| Domain Type | Ser-Thr Kinase, LRR |
| Gene Species | Zea mays |
DNA Sequence
GGCTGGCTCGGATGCGGACGCGCTGCTGGCGGCGAAGGCGGTGCTGTCGGACCCGGCCGGCGCGCTCGCGTCCTGGACGAACGCCACCAGCACCGGCGCCTGCGCGTGGTCCGGCGTGACGTGCAACGCGCGCGCCGCGGTCATCGGCCTCGACCTCTCCGGCCGCAACCTCTCGGGCCCGGTGCCCACGGCGCTGTcccgcctcgcgcacctcgcgcgcctcgacctcgccgcgaacgcgctcTGCGGCCCCATCCCGGCGCCGCTGTCCCGGCTCCAGTCCCTCACCCACCTCAACCTCTCCAACAACGTGCTCAACGGCACCTTCCCGCCGCCGCTCGCGCGCCTGCGGGCGCTCCGCGTGCTCGACCTCTACAACAACAACCTCACCGGCCCGCTCCCGCTCGCGGTCGTGGGCCTGCCGGTGCTCCGCCACCTCCACCTCGGCGGCAACTTCTTCTCCGGCGAGATCCCGCCCGAGTACGGCCGCTGGCGGAGGCTGCAGTACCTCGCCGTCTCCGGGAACGAGCTGTCGGGGAGGATTCCTCCGGAGCTCGGCGGCCTCACCACCCTCAGGGAGCTCTACATTGGCTACTACAACAGCTACTCCAGCGGCCTACCCCCGGAGCTCGGCAACATGACGGATCTCGTCCGCCTCGACGCCGCCAACTGCGGGCTCTCCGGCGAGATTCCGCCGGAGCTCGGGAACCTCGCCAACCTCGACACGCTCTTCCTGCAGGTGAACGGGCTCGCCGGCGCCATCCCGCCGGAGCTGGGCCGGCTCAAGAGCCTCAGCTCGCTCGACCTGTCCCACAACGCGCTCACCGGCGAGATCCCAGCGAGCTTCGCGGCGCTCA
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| Zm.140543 | translated coding region predicted by ESTScan from UniGene Zm.140543 | XAGSDADALLAAKAVLSDPAGALASWTNATSTGACAWSGVTCNARAAVIGLDLSGRNLSGPVPTALSRLAHLARLDLAANALCGPIPAPLSRLQSLTHLNLSNNVLNGTFPPPLARLRALRVLDLYNNNLTGPLPLAVVGLPVLRHLHLGGNFFSGEIPPEYGRWRRLQYLAVSGNELSGRIPPELGGLTTLRELYIGYYNSYSSGLPPELGNMTDLVRLDAANCGLSGEIPPELGNLANLDTLFLQVNGLAGAIPPELGRLKSLSSLDLSHNALTGEIPASFAALX |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| Seg: seg | 1-18 | seg | XAGSDADALLAAKAVLSD |
| HMMPanther: PTHR24420 | 2-281 | FAMILY NOT NAMED,FAMILY NOT NAMED | AGSDADALLAAKAVLSDPAGALASWTNATSTGACAWSGVTCNARAAVIGLDLSGRNLSGPVPTALSRLAHLARLDLAANALCGPIPAPLSRLQSLTHLNLSNNVLNGTFPPPLARLRALRVLDLYNNNLTGPLPLAVVGLPVLRHLHLGGNFFSGEIPPEYGRWRRLQYLAVSGNELSGRIPPELGGLTTLRELYIGYYNSYSSGLPPELGNMTDLVRLDAANCGLSGEIPPELGNLANLDTLFLQVNGLAGAIPPELGRLKSLSSLDLSHNALTGEIPA |
| HMMPanther: PTHR24420:SF462 | 2-281 | SUBFAMILY NOT NAMED,SUBFAMILY NOT NAMED | AGSDADALLAAKAVLSDPAGALASWTNATSTGACAWSGVTCNARAAVIGLDLSGRNLSGPVPTALSRLAHLARLDLAANALCGPIPAPLSRLQSLTHLNLSNNVLNGTFPPPLARLRALRVLDLYNNNLTGPLPLAVVGLPVLRHLHLGGNFFSGEIPPEYGRWRRLQYLAVSGNELSGRIPPELGGLTTLRELYIGYYNSYSSGLPPELGNMTDLVRLDAANCGLSGEIPPELGNLANLDTLFLQVNGLAGAIPPELGRLKSLSSLDLSHNALTGEIPA |
| HMMPfam: PF08263 IPR013210
|
3-43 | LRRNT_2 Leucine-rich repeat-containing N-terminal domain,
|
GSDADALLAAKAVLSDPAGALASWTNATSTGACAWSGVTCN |
| superfamily: SSF52058 | 4-286 | L domain-like,LRR | SDADALLAAKAVLSDPAGALASWTNATSTGACAWSGVTCNARAAVIGLDLSGRNLSGPVPTALSRLAHLARLDLAANALCGPIPAPLSRLQSLTHLNLSNNVLNGTFPPPLARLRALRVLDLYNNNLTGPLPLAVVGLPVLRHLHLGGNFFSGEIPPEYGRWRRLQYLAVSGNELSGRIPPELGGLTTLRELYIGYYNSYSSGLPPELGNMTDLVRLDAANCGLSGEIPPELGNLANLDTLFLQVNGLAGAIPPELGRLKSLSSLDLSHNALTGEIPASFAAL |
| Gene3D: G3DSA:3.80.10.10 | 5-286 | no description | DADALLAAKAVLSDPAGALASWTNATSTGACAWSGVTCNARAAVIGLDLSGRNLSGPVPTALSRLAHLARLDLAANALCGPIPAPLSRLQSLTHLNLSNNVLNGTFPPPLARLRALRVLDLYNNNLTGPLPLAVVGLPVLRHLHLGGNFFSGEIPPEYGRWRRLQYLAVSGNELSGRIPPELGGLTTLRELYIGYYNSYSSGLPPELGNMTDLVRLDAANCGLSGEIPPELGNLANLDTLFLQVNGLAGAIPPELGRLKSLSSLDLSHNALTGEIPASFAAL |
| Seg: seg | 65-82 | seg | ALSRLAHLARLDLAANAL |
| HMMPfam: PF13855 | 95-152 | LRR_8,Leucine rich repeat | SLTHLNLSNNVLNGTFPPPLARLRALRVLDLYNNNLTGPLPLAVVGLPVLRHLHLGGN |
| FPrintScan: PR00019 | 96-109 | LEURICHRPT,Leucine-rich repeat signature | LTHLNLSNNVLNGT |
| Seg: seg | 111-121 | seg | PPPLARLRALR |
| Seg: seg | 130-144 | seg | LTGPLPLAVVGLPVL |
| HMMPfam: PF00560 IPR001611
|
167-189 | LRR_1 Leucine-rich repeat
|
RLQYLAVSGNELSGRIPPELGGL |
| HMMPfam: PF00560 IPR001611
|
217-238 | LRR_1 Leucine-rich repeat
|
LVRLDAANCGLSGEIPPELGNL |
| FPrintScan: PR00019 | 262-275 | LEURICHRPT,Leucine-rich repeat signature | LKSLSSLDLSHNAL |
| HMMPfam: PF13516 | 262-284 | LRR_6,Leucine Rich repeat | LKSLSSLDLSHNALTGEIPASFA |
List of Contributions
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