PRGDB00064653 (Aan.56)

From PRG Wiki
Jump to: navigation, search
Aan.56
Gene Type Putative_R-Genes,_predicted_from_NCBI_UniGene
GenBank 159646160 (EY055452)
Gene Class Unknown
Domain Type Ser-Thr Kinase
Gene Species Artemisia annua

Comment?

CATC5468.fwd CATC Artemisia annua, Tanzanian, from Sandeman Seeds, 0.5-1kb Artemisia annua cDNA clone CATC5468 5', mRNA sequence

DNA Sequence

AGATTTCAGATATCAAAGGGAGTTTTGGGTATTTGGATCCTGAATACATAAGATGCATGAAACTGACCCAGAAATCAGATGTTTACTCCTTTGGTGTAGTTTTACTTGAAGTACTCTGTGCGAGGCCAGCACTCGATAACACGTTACCTCCAAGGGAAGCAAATTTGGCAGATTGGGCGATTAAACAAATACACAATGGGAAGGTTGAGGAGATTATTGATCCATTTCTGTCGGACACAATAAATCCAAATTCATTACGAAAATTTCTGGAAACGGTAGAGAGATGTTTAAAAGATACGGGAGACGAGAGGCCAAGCATGATTGATGTGTTGTGGGACTTAGAATATGCGTTGAAGCTTCATCAGATGGTGGGGAACAGAGAACCTCATGAAGATAGCACAATGAATACGTCGTTGCAGCTGCCCATGTCGATGATTCAGCGTTTGCCTTCTCATGTTAATGATGATTCTGAGGTTAATGAAAGCTCGGCCTCGAGTTTTCCTAGTGAAAGCCAAGTATTTTCCCAACTGAAGATGGGCGAAGCTCGATAGTACATATATAAGTTTCATGTGTGTATTGAAGTTTAAAAGTATCGATGTTATTTATTTTCCGTTACAGCATTGTAAAAATGATATAGTATTAATAAATCCAAAGCAATTCATAGCGTTGGAATGTTTTATCTCAGaaaaaaaaaaaaaaaaaaaaaaaaaaaaC


Protein sequences

Name Description Sequence
Aan.56 translated coding region predicted by ESTScan from UniGene Aan.56

XISDIKGSFGYLDPEYIRCMKLTQKSDVYSFGVVLLEVLCARPALDNTLPPREANLADWAIKQIHNGKVEEIIDPFLSDTINPNSLRKFLETVERCLKDTGDERPSMIDVLWDLEYALKLHQMVGNREPHEDSTMNTSLQLPMSMIQRLPSHVNDDSEVNESSASSFPSESQVFSQLKMGEAR

Domains

Domain Start-End Description Sequence

ProfileScan: PS50011
IPR000719
1-124 PROTEIN_KINASE_DOM
Protein kinase, catalytic domain

XISDIKGSFGYLDPEYIRCMKLTQKSDVYSFGVVLLEVLCARPALDNTLPPREANLADWAIKQIHNGKVEEIIDPFLSDTINPNSLRKFLETVERCLKDTGDERPSMIDVLWDLEYALKLHQMV

HMMPfam: PF00069
IPR017442
4-110 Pkinase,Ser-thr
Serine/threonine-protein kinase-like domain

DIKGSFGYLDPEYIRCMKLTQKSDVYSFGVVLLEVLCARPALDNTLPPREANLADWAIKQIHNGKVEEIIDPFLSDTINPNSLRKFLETVERCLKDTGDERPSMIDV

Gene3D: G3DSA:1.10.510.10
4-135 no description

DIKGSFGYLDPEYIRCMKLTQKSDVYSFGVVLLEVLCARPALDNTLPPREANLADWAIKQIHNGKVEEIIDPFLSDTINPNSLRKFLETVERCLKDTGDERPSMIDVLWDLEYALKLHQMVGNREPHEDSTM

superfamily: SSF56112
IPR011009
5-157 Protein kinase-like (PK-like)
Protein kinase-like domain

IKGSFGYLDPEYIRCMKLTQKSDVYSFGVVLLEVLCARPALDNTLPPREANLADWAIKQIHNGKVEEIIDPFLSDTINPNSLRKFLETVERCLKDTGDERPSMIDVLWDLEYALKLHQMVGNREPHEDSTMNTSLQLPMSMIQRLPSHVNDDS

HMMPanther: PTHR24420
5-181 FAMILY NOT NAMED,FAMILY NOT NAMED

IKGSFGYLDPEYIRCMKLTQKSDVYSFGVVLLEVLCARPALDNTLPPREANLADWAIKQIHNGKVEEIIDPFLSDTINPNSLRKFLETVERCLKDTGDERPSMIDVLWDLEYALKLHQMVGNREPHEDSTMNTSLQLPMSMIQRLPSHVNDDSEVNESSASSFPSESQVFSQLKMGE

HMMPanther: PTHR24420:SF785
5-181 SUBFAMILY NOT NAMED

IKGSFGYLDPEYIRCMKLTQKSDVYSFGVVLLEVLCARPALDNTLPPREANLADWAIKQIHNGKVEEIIDPFLSDTINPNSLRKFLETVERCLKDTGDERPSMIDVLWDLEYALKLHQMVGNREPHEDSTMNTSLQLPMSMIQRLPSHVNDDSEVNESSASSFPSESQVFSQLKMGE

Seg: seg
154-176 seg

NDDSEVNESSASSFPSESQVFSQ






List of Contributions

There has not been any contribution yet.


Analyses

Blast

Blast matches against Reference R-Genes. Show


Personal tools
Namespaces

Variants
Actions
PRGDB
META-SPECIES
Wiki
Toolbox