PRGDB00064658 (Aan.392)

Aan.392
Gene Type	Putative_R-Genes,_predicted_from_NCBI_UniGene
GenBank	259731684 (EZ180433)
Gene Class	Unknown
Domain Type
Gene Species	Artemisia annua
	Comment?

TSA: Artemisia annua strain Artemis Contig3909.Ac mRNA sequence

DNA Sequence

CCGACTATTTGGNNNTTTTTTTCGTACTNCCGAAGGCCAACGTAATAGGACCGAAATCATATGATGTTATCCCATGCTACTCGGGTCAGAGCGTAAGCTAGTGATGCTTTCGGCTACTGGACTTTCGCCATCTAGGGTGCAGCATTCTACTGCTTCGCCTAGCAGCACGACGCTTGTATTGCTCTCCCACAACCCCGTTTTCACGGTTTAGGCTGCTCCCATTTCGCTCGCGCGATCCTGTTACTGTCAAAAAATATGCTAGACGCGCTCAATTGGGGGAAATTTTTGAATTAGATCGTGCTACTTTGAAATCCGATGGTGTTCTTCGTAGCAGTCCGANGGGTTGGTTTACTTTTGGACATGCTTCATTTGCTTTACTCTTCTTCTTCGGACACATTTGGCATGGTGCTCCAACTTTGTTTAGCCCAAGACCCAAGCTTAAATTGTACCTCTTCCATCCCCTTCTAACAACTTCAGAACTATCGATGTATGGAGGAACAACCACCGCAGTAACCGTGTCGCTGAACCATTCCTCTTTTGCAGTGCAGTTTTTCAGCCCCCATGCTTCGACAGCCAACCTAGTGGCCGTGCCAAGACGAGCGTGCCTTGCAATGACATTATCCAATCCTTCTTCAAAGATGAGATCAAGAGCTGCTTTAAGACCATACAAAAGTTGAATGGATGGAGTGTAAGGCCAATATGTCCCCATCTTGTAGAATTTCAAGTAGTCCTTCCAATCGAAGAAAACTCTAACTGATTTTGCAGTTTGAGAAGCTTCAATAGCTTTGGGGCTGGCACACACAATCCCCATACCAGTTGGAAGAGAAAGTGCTTTCTGAGAGCCGGTTAAAGCAACATCAACACCCCATTCATCCATACGGAAATCCAAAGCACATATGGATGACACACCATCAACTAGAAAGAGGGCTGGATGTTGGTAGTGATCAAGAATTTTCCTTACGGAAGCCAAGTTGTTAGTAACTCCTGTTGCTGTCTCGTTGTGAACGATGCAGATGGCCTTAATAGTATGAGCCGAATCTGCAGCCAGTTTTGATGCTAGGACTTCCAAGTCAGCACCATGGCCCCATTCACTTTCCACCACATCAACATTGTAGCCAAGGCGTTGCTGCTGATCAACC

Protein sequences

Name	Description	Sequence
Aan.392	translated coding region predicted by ESTScan from UniGene Aan.392	XVDQQQRLGYNVDVVESEWGHGADLEVLASKLAADSAHTIKAICIVHNETATGVTNNLASVRKILDHYQHPALFLVDGVSSICALDFRMDEWGVDVALTGSQKALSLPTGMGIVCASPKAIEASQTAKSVRVFFDWKDYLKFYKMGTYWPYTPSIQLLYGLKAALDLIFEEGLDNVIARHARLGTATRLAVEAWGLKNCTAKEEWFSDTVTAVVVPPYIDSSEVVRRGWKRYNLSLGLGLNKVGAPCQMCPKKKSKANEACPKVNQPXGLLRRTPSDFKVARSNSKISPNXARLAYFLTVTGSRERNGSSLNRENGVVGEQYKRRAAREAVECCTLDGESPVAESITSLRSDPSSMG

Domains

Domain	Start-End	Description	Sequence
superfamily: SSF53383 IPR015424	2-242	PLP-dependent transferases Pyridoxal phosphate-dependent transferase, major d	VDQQQRLGYNVDVVESEWGHGADLEVLASKLAADSAHTIKAICIVHNETATGVTNNLASVRKILDHYQHPALFLVDGVSSICALDFRMDEWGVDVALTGSQKALSLPTGMGIVCASPKAIEASQTAKSVRVFFDWKDYLKFYKMGTYWPYTPSIQLLYGLKAALDLIFEEGLDNVIARHARLGTATRLAVEAWGLKNCTAKEEWFSDTVTAVVVPPYIDSSEVVRRGWKRYNLSLGLGLNK
HMMPanther: PTHR21152	3-243	FAMILY NOT NAMED,AMINOTRANSFERASE CLASS V	DQQQRLGYNVDVVESEWGHGADLEVLASKLAADSAHTIKAICIVHNETATGVTNNLASVRKILDHYQHPALFLVDGVSSICALDFRMDEWGVDVALTGSQKALSLPTGMGIVCASPKAIEASQTAKSVRVFFDWKDYLKFYKMGTYWPYTPSIQLLYGLKAALDLIFEEGLDNVIARHARLGTATRLAVEAWGLKNCTAKEEWFSDTVTAVVVPPYIDSSEVVRRGWKRYNLSLGLGLNKV
HMMPanther: PTHR21152:SF7	3-243	SUBFAMILY NOT NAMED,SUBFAMILY NOT NAMED	DQQQRLGYNVDVVESEWGHGADLEVLASKLAADSAHTIKAICIVHNETATGVTNNLASVRKILDHYQHPALFLVDGVSSICALDFRMDEWGVDVALTGSQKALSLPTGMGIVCASPKAIEASQTAKSVRVFFDWKDYLKFYKMGTYWPYTPSIQLLYGLKAALDLIFEEGLDNVIARHARLGTATRLAVEAWGLKNCTAKEEWFSDTVTAVVVPPYIDSSEVVRRGWKRYNLSLGLGLNKV
Gene3D: G3DSA:3.40.640.10 IPR015421	4-159	no description Pyridoxal phosphate-dependent transferase, major r	QQQRLGYNVDVVESEWGHGADLEVLASKLAADSAHTIKAICIVHNETATGVTNNLASVRKILDHYQHPALFLVDGVSSICALDFRMDEWGVDVALTGSQKALSLPTGMGIVCASPKAIEASQTAKSVRVFFDWKDYLKFYKMGTYWPYTPSIQLLY
HMMPfam: PF00266 IPR000192	5-225	Aminotran_5 Aminotransferase, class V/Cysteine desulfurase	QQRLGYNVDVVESEWGHGADLEVLASKLAADSAHTIKAICIVHNETATGVTNNLASVRKILDHYQHPALFLVDGVSSICALDFRMDEWGVDVALTGSQKALSLPTGMGIVCASPKAIEASQTAKSVRVFFDWKDYLKFYKMGTYWPYTPSIQLLYGLKAALDLIFEEGLDNVIARHARLGTATRLAVEAWGLKNCTAKEEWFSDTVTAVVVPPYIDSSEVV
PatternScan: PS00595 IPR020578	94-114	AA_TRANSFER_CLASS_5 Aminotransferase class-V pyridoxal-phosphate bindi	VDVALTGSQKALSLPTGMGIV
Gene3D: G3DSA:3.90.1150.10 IPR015422	160-243	no description Pyridoxal phosphate-dependent transferase, major r	GLKAALDLIFEEGLDNVIARHARLGTATRLAVEAWGLKNCTAKEEWFSDTVTAVVVPPYIDSSEVVRRGWKRYNLSLGLGLNKV

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Analyses

Blast

Blast matches against Reference R-Genes. Show