PRGDB00064670 (Aan.1238)

Aan.1238
Gene Type	Putative_R-Genes,_predicted_from_NCBI_UniGene
GenBank	259857034 (EZ217310)
Gene Class	Unknown
Domain Type
Gene Species	Artemisia annua
	Comment?

TSA: Artemisia annua strain Artemis Contig14321.Aylt mRNA sequence

DNA Sequence

CACCATTAATTTTAATAATGTATGATAATCTTTTCTACAGAACATCCAACTGTAAACAAAACTAGAAAATTTTATAAGAAAAAAGTCCTTGTAATTTACTGGAAACGGATTTTGACACTTTCGACATAAAGAAACAAGTTCCGCTCCTTTAAAACAGATCTTTGTCGCATAATTGGTTCCTTCCCATAGAATTTTTTATTTGGTTCGGTTGGTTGATTTGGGACTACCAATGAAAATACAAATCACGGAGACAAAGTGGCATTCTCTTCACATATGTTACATACACATCATAGAAATACGGAATGGTTATAACCTCCAAGTCTATAACTACCATCGTTTTACTAATAATCTCTAATGAGACATGCCATTCAAGATATAAAGCCTTTGCTTTTCAAACTCTCAACACTGTCCTTAATGATCTGCTCCATAGGAATGAACTCTAGACCCAAGTCCATGAGCTTTTTGGATGCAGTCTTGTATCTCAACAATCCTGGTTGGGTATCTTTCGGCAACCTGGGGATGTTATACTCGGGGTACAGTTCTGCAACCTTGGCTGCAAAATCACCATAATGGGTAATGGCTTCAACACAGAGGTGTCTTCCGGTTGCTGATGTGTTTTCATACACCAATATATGAGCTAAGGCCACGTCTTTAACATGAACAGAACCCATGAAGTAATTTTCATATGTATCCGTACATCCTTGAATAAGACGAAGAATCATTAGCATGCTCGCATTAAGTGTTGGAGGAATTATTGGACCCATCACTGTTCCAGGGTTCACCACAACTATATCTAAGCCTTTCTCTTTAGCGAAATCCCATGCTGCTTTCTCAGCTAGTGTTTTGGAGAGTGGATACCACACCTCATTTTGCTTGCAATACTCAGCATCGGTCCAGCAATCCTCACTCTTGGGGACATCAGCAGGCCATGAAGGACTAGGTACAATGGCTGATACAGATGAAGTGACAACCACACGCTTCACTCCAAGCTCCTTTGCCGCTGTGAGTACATTGTTCGTCCCCCTAACAGCAGGTTCCAGTAACTCCTTCTCAGGATCATAGACTTTATCAACAATACAAGGCGAAGCCAAATGAAACACACCAGACACACCACTAACCGCCTTCACAATGGAGTCATAGTCAAGCAAGTCAATCTCAAACAAATGTAGCCTCGTTTCCGCACCTTCTAAACTTTCTAAATGCTTAGTTTCCTTCTCATCCTTGAGATTTTTGACAGTGGCATTAACGGTGTAACCGCGACTGAGAAGGAGTTTGATGAGGTGTGATCCGATGTAACCGCTTCCGCCTGTTACGCAAACCAACTTTGCTGTTTGTTCTGTCATTGTTTTTTTCTCTTATCTTTGATGTTTCGGAGGTTATTTAGTTCAGTGCTTTGTGAGTTTGTGACTGTGTTTC

Protein sequences

Name	Description	Sequence
Aan.1238	translated coding region predicted by ESTScan from UniGene Aan.1238	MTEQTAKLVCVTGGSGYIGSHLIKLLLSRGYTVNATVKNLKDEKETKHLESLEGAETRLHLFEIDLLDYDSIVKAVSGVSGVFHLASPCIVDKVYDPEKELLEPAVRGTNNVLTAAKELGVKRVVVTSSVSAIVPSPSWPADVPKSEDCWTDAEYCKQNEVWYPLSKTLAEKAAWDFAKEKGLDIVVVNPGTVMGPIIPPTLNASMLMILRLIQGCTDTYENYFMGSVHVKDVALAHILVYENTSATGRHLCVEAITHYGDFAAKVAELYPEYNIPRLPKDTQPGLLRYKTASKKLMDLGLEFIPMEQIIKDSVESLKSKGFIS

Domains

Domain	Start-End	Description	Sequence
HMMPanther: PTHR10366:SF9	1-323	CINNAMOYL-COA REDUCTASE,CINNAMOYL-COA REDUCTASE	MTEQTAKLVCVTGGSGYIGSHLIKLLLSRGYTVNATVKNLKDEKETKHLESLEGAETRLHLFEIDLLDYDSIVKAVSGVSGVFHLASPCIVDKVYDPEKELLEPAVRGTNNVLTAAKELGVKRVVVTSSVSAIVPSPSWPADVPKSEDCWTDAEYCKQNEVWYPLSKTLAEKAAWDFAKEKGLDIVVVNPGTVMGPIIPPTLNASMLMILRLIQGCTDTYENYFMGSVHVKDVALAHILVYENTSATGRHLCVEAITHYGDFAAKVAELYPEYNIPRLPKDTQPGLLRYKTASKKLMDLGLEFIPMEQIIKDSVESLKSKGFI
HMMPanther: PTHR10366	1-323	FAMILY NOT NAMED,NAD DEPENDENT EPIMERASE/DEHYDRATASE	MTEQTAKLVCVTGGSGYIGSHLIKLLLSRGYTVNATVKNLKDEKETKHLESLEGAETRLHLFEIDLLDYDSIVKAVSGVSGVFHLASPCIVDKVYDPEKELLEPAVRGTNNVLTAAKELGVKRVVVTSSVSAIVPSPSWPADVPKSEDCWTDAEYCKQNEVWYPLSKTLAEKAAWDFAKEKGLDIVVVNPGTVMGPIIPPTLNASMLMILRLIQGCTDTYENYFMGSVHVKDVALAHILVYENTSATGRHLCVEAITHYGDFAAKVAELYPEYNIPRLPKDTQPGLLRYKTASKKLMDLGLEFIPMEQIIKDSVESLKSKGFI
superfamily: SSF51735	7-319	NAD(P)-binding Rossmann-fold domains	KLVCVTGGSGYIGSHLIKLLLSRGYTVNATVKNLKDEKETKHLESLEGAETRLHLFEIDLLDYDSIVKAVSGVSGVFHLASPCIVDKVYDPEKELLEPAVRGTNNVLTAAKELGVKRVVVTSSVSAIVPSPSWPADVPKSEDCWTDAEYCKQNEVWYPLSKTLAEKAAWDFAKEKGLDIVVVNPGTVMGPIIPPTLNASMLMILRLIQGCTDTYENYFMGSVHVKDVALAHILVYENTSATGRHLCVEAITHYGDFAAKVAELYPEYNIPRLPKDTQPGLLRYKTASKKLMDLGLEFIPMEQIIKDSVESLKS
Gene3D: G3DSA:3.40.50.720 IPR016040	7-226	no description NAD(P)-binding domain	KLVCVTGGSGYIGSHLIKLLLSRGYTVNATVKNLKDEKETKHLESLEGAETRLHLFEIDLLDYDSIVKAVSGVSGVFHLASPCIVDKVYDPEKELLEPAVRGTNNVLTAAKELGVKRVVVTSSVSAIVPSPSWPADVPKSEDCWTDAEYCKQNEVWYPLSKTLAEKAAWDFAKEKGLDIVVVNPGTVMGPIIPPTLNASMLMILRLIQGCTDTYENYFMG
HMMPfam: PF01370 IPR001509	9-250	Epimerase NAD-dependent epimerase/dehydratase	VCVTGGSGYIGSHLIKLLLSRGYTVNATVKNLKDEKETKHLESLEGAETRLHLFEIDLLDYDSIVKAVSGVSGVFHLASPCIVDKVYDPEKELLEPAVRGTNNVLTAAKELGVKRVVVTSSVSAIVPSPSWPADVPKSEDCWTDAEYCKQNEVWYPLSKTLAEKAAWDFAKEKGLDIVVVNPGTVMGPIIPPTLNASMLMILRLIQGCTDTYENYFMGSVHVKDVALAHILVYENTSATGRH

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Analyses

Blast

Blast matches against Reference R-Genes. Show