PRGDB00064686 (Aan.3184)

From PRG Wiki
Jump to: navigation, search
Aan.3184
Gene Type Putative_R-Genes,_predicted_from_NCBI_UniGene
GenBank 259555396 (EZ168674)
Gene Class Unknown
Domain Type
Gene Species Artemisia annua

Comment?

TSA: Artemisia annua strain Artemis Contig28080, mRNA sequence

DNA Sequence

GGTCACTCTtcaatttttacaacaatttaatttaatttaattaattGGTTCTTGATTTAACTATGAATCCCCAAAATATTTCTCTTTAAAATCAGATCTTGATTGATAATTAAGAAAGAAAAAGATGGCAACTTTTGAATTATACAGAAGATCAACAATTGGAATGTGTTTGACAGAGACATTGGATGAGATGGTTTCTAATGGTGTTCTTACTCCTGAGCTTGCCATCCAAGTCCTTGTTCAGTTTGATAAGTCGATGACGGAAGCTCTTGACAGCCAAGTTAAAAGCAAGGTGACCATCAAGGGGCACTTGCACACCTACAGATTCTGTGACAATGTGTGGACGTTCATTGTTCAAGATGCCATTTTCAAGTATGACGAAACCCAGGAGAATGTTGGTCAAGTTAAAATAGTGGCATGTGACTCCAAGCTGCTGACGCAGTGATTCATGCTTAGCATTTCATGTCTAGTTGCTGATAAAAGATGGTATTGATTAAGAGTGTAGAAAAGGGGTACGATAAAAAAGTTGGGAGGTTTTGTTCTATCGTTGTACCTGCTAGAACGTGACATCATAACAAAATGTTGAATAATCTTATCAGCCTAAAACTTGTGTAatttttgtcttctatgttacttttttcttgttttttcatattttgtCACTGTTATTCGTGTTTCGTGATGTATTTGGTGTAATAGGATGGATTAGGAAAAATGTAATGTTATTGCCACGGGGCTATGAACTCTCTCAGCTTTTGTTTGTAGTACAAGTTCCTTTAGTATGCG


Protein sequences

Name Description Sequence
Aan.3184 translated coding region predicted by ESTScan from UniGene Aan.3184

MATFELYRRSTIGMCLTETLDEMVSNGVLTPELAIQVLVQFDKSMTEALDSQVKSKVTIKGHLHTYRFCDNVWTFIVQDAIFKYDETQENVGQVKIVACDSKLLTQ

Domains

Domain Start-End Description Sequence

HMMPIR: PIRSF009415
IPR003194
1-106 Transcription initiation factor IIA, gamma subunit
Transcription initiation factor IIA, gamma subunit

MATFELYRRSTIGMCLTETLDEMVSNGVLTPELAIQVLVQFDKSMTEALDSQVKSKVTIKGHLHTYRFCDNVWTFIVQDAIFKYDETQENVGQVKIVACDSKLLTQ

BlastProDom: PD009224
IPR015872
1-50 Q7FPX2_ORYSA_Q7FPX2;
Transcription initiation factor IIA, gamma subunit

MATFELYRRSTIGMCLTETLDEMVSNGVLTPELAIQVLVQFDKSMTEALD

HMMPanther: PTHR10966
IPR003194
1-103 TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 2
Transcription initiation factor IIA, gamma subunit

MATFELYRRSTIGMCLTETLDEMVSNGVLTPELAIQVLVQFDKSMTEALDSQVKSKVTIKGHLHTYRFCDNVWTFIVQDAIFKYDETQENVGQVKIVACDSKL

Gene3D: G3DSA:1.10.287.190
IPR015872
2-54 no description
Transcription initiation factor IIA, gamma subunit

ATFELYRRSTIGMCLTETLDEMVSNGVLTPELAIQVLVQFDKSMTEALDSQVK

HMMPfam: PF02268
IPR015872
3-49 TFIIA_gamma_N
Transcription initiation factor IIA, gamma subunit

TFELYRRSTIGMCLTETLDEMVSNGVLTPELAIQVLVQFDKSMTEAL

superfamily: SSF47396
IPR009083
4-54 Transcription factor IIA (TFIIA), alpha-helical domain
Transcription factor IIA, helical

FELYRRSTIGMCLTETLDEMVSNGVLTPELAIQVLVQFDKSMTEALDSQVK

superfamily: SSF50784
IPR009088
52-102 Transcription factor IIA (TFIIA), beta-barrel domain
Transcription factor IIA, beta-barrel

QVKSKVTIKGHLHTYRFCDNVWTFIVQDAIFKYDETQENVGQVKIVACDSK

HMMPfam: PF02751
IPR015871
52-101 TFIIA_gamma_C
Transcription initiation factor IIA, gamma subunit

QVKSKVTIKGHLHTYRFCDNVWTFIVQDAIFKYDETQENVGQVKIVACDS

Gene3D: G3DSA:2.30.18.10
IPR009088
55-105 no description
Transcription factor IIA, beta-barrel

SKVTIKGHLHTYRFCDNVWTFIVQDAIFKYDETQENVGQVKIVACDSKLLT






List of Contributions

There has not been any contribution yet.


Analyses

Blast

Blast matches against Reference R-Genes. Show


Personal tools
Namespaces

Variants
Actions
PRGDB
META-SPECIES
Wiki
Toolbox