PRGDB00064764 (Aan.14531)

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Aan.14531
Gene Type Putative_R-Genes,_predicted_from_NCBI_UniGene
GenBank 259584186 (EZ293529)
Gene Class Unknown
Domain Type
Gene Species Artemisia annua

Comment?

TSA: Artemisia annua strain Madagascar Contig19916.Mt mRNA sequence

DNA Sequence

GGCAGAAAGGTTTATATGGAAAATGACAAATACTATTGGACCTAGTATTTGAGATAATAAAATGTCCTCTATTACCTTTCAAATTGTGCAGCATCAAACTATGAGCGGTGAGGGGAAAGTGGTTTGTGTGACAGGTGCTTCCGGCTTCATTGCTTCATGGCTCGTTAAGCTCTTGCTGGCTCGTGGCTACTCTGTTGTTGCTACTGTTCGATCACTTGGTGATCCGAAAAAGACAGAACATTTACTTGCTCTCGATGGAGCTAAAGAAAGACTATCTTTGTTTGAAGCTAACTTGACTGAAGATGGTTCTTTCGACTCTGCAGTTAAAGGCTGCATATGCGTCTTTCACACAGCATCTCCTGTTCATCTTGTAGTTGATGACCCACAGGCGCAATTGATAGATCCTGCAGTGAAGGGGACACTTAATGTTCTTAACTCAGCTTCAAAAGTTCCATCTCTCAGAAGAGTCGTCTTGACATCTTCCATGGCTTCAGTTTTGTTCGGTGCAAAAGTTCCAGTATTTGGTGATGTGGTGGATGAAACCTGGTTTTCAGACCCAACAGTTTGTCAGAAAAGAAATTCGTGGTATTGCGTTTCAAAGACTATGGCTGAGGATGCTGCTGTGAAGTTTTCACAAGAGAACAATATGGATTTGGTGGTGATAAATCCTGGCTTTGTGATTGGTCCTATCTTACAGCCAACTCTCAACAACACTTCTAAGAGATTCATGAACTTTATAAAAACCGGAGAGGATGTATTTTCAGATAGAGTCTATATACTTGTTGATGTAAGAGATGTTGCGATTGCACATATATTAGCCTTTGAGAAGCCCGAAGCTAATGGCAGATACTGTGTGGTTGGGAATGTGATTCATTCTTCTGAAATCATGAAGATTGTAGCCAAACTCTACCCAACTCTTGGCCATTCTAAAGGGTATACAGATGGGAAGGATGCTGAGCCCCAATTTTACAGTGTATCTAGGGTAAAGGCGGAAGGTCTAGGTGTTGAGTTTACTCCGGTGGAGGTAAGCATTAAGGACACTATTGAAAGCTTGAAGGGGAAGAACTTGTTGAGCTTATAAAACACCAAACAACATTTC


Protein sequences

Name Description Sequence
Aan.14531 translated coding region predicted by ESTScan from UniGene Aan.14531

MSSITFQIVQHQTMSGEGKVVCVTGASGFIASWLVKLLLARGYSVVATVRSLGDPKKTEHLLALDGAKERLSLFEANLTEDGSFDSAVKGCICVFHTASPVHLVVDDPQAQLIDPAVKGTLNVLNSASKVPSLRRVVLTSSMASVLFGAKVPVFGDVVDETWFSDPTVCQKRNSWYCVSKTMAEDAAVKFSQENNMDLVVINPGFVIGPILQPTLNNTSKRFMNFIKTGEDVFSDRVYILVDVRDVAIAHILAFEKPEANGRYCVVGNVIHSSEIMKIVAKLYPTLGHSKGYTDGKDAEPQFYSVSRVKAEGLGVEFTPVEVSIKDTIESLKGKNLLSL

Domains

Domain Start-End Description Sequence

HMMPanther: PTHR10366:SF9
4-337 CINNAMOYL-COA REDUCTASE,CINNAMOYL-COA REDUCTASE

ITFQIVQHQTMSGEGKVVCVTGASGFIASWLVKLLLARGYSVVATVRSLGDPKKTEHLLALDGAKERLSLFEANLTEDGSFDSAVKGCICVFHTASPVHLVVDDPQAQLIDPAVKGTLNVLNSASKVPSLRRVVLTSSMASVLFGAKVPVFGDVVDETWFSDPTVCQKRNSWYCVSKTMAEDAAVKFSQENNMDLVVINPGFVIGPILQPTLNNTSKRFMNFIKTGEDVFSDRVYILVDVRDVAIAHILAFEKPEANGRYCVVGNVIHSSEIMKIVAKLYPTLGHSKGYTDGKDAEPQFYSVSRVKAEGLGVEFTPVEVSIKDTIESLKGKNLL

HMMPanther: PTHR10366
4-337 FAMILY NOT NAMED,NAD DEPENDENT EPIMERASE/DEHYDRATASE

ITFQIVQHQTMSGEGKVVCVTGASGFIASWLVKLLLARGYSVVATVRSLGDPKKTEHLLALDGAKERLSLFEANLTEDGSFDSAVKGCICVFHTASPVHLVVDDPQAQLIDPAVKGTLNVLNSASKVPSLRRVVLTSSMASVLFGAKVPVFGDVVDETWFSDPTVCQKRNSWYCVSKTMAEDAAVKFSQENNMDLVVINPGFVIGPILQPTLNNTSKRFMNFIKTGEDVFSDRVYILVDVRDVAIAHILAFEKPEANGRYCVVGNVIHSSEIMKIVAKLYPTLGHSKGYTDGKDAEPQFYSVSRVKAEGLGVEFTPVEVSIKDTIESLKGKNLL

superfamily: SSF51735
8-333 NAD(P)-binding Rossmann-fold domains

IVQHQTMSGEGKVVCVTGASGFIASWLVKLLLARGYSVVATVRSLGDPKKTEHLLALDGAKERLSLFEANLTEDGSFDSAVKGCICVFHTASPVHLVVDDPQAQLIDPAVKGTLNVLNSASKVPSLRRVVLTSSMASVLFGAKVPVFGDVVDETWFSDPTVCQKRNSWYCVSKTMAEDAAVKFSQENNMDLVVINPGFVIGPILQPTLNNTSKRFMNFIKTGEDVFSDRVYILVDVRDVAIAHILAFEKPEANGRYCVVGNVIHSSEIMKIVAKLYPTLGHSKGYTDGKDAEPQFYSVSRVKAEGLGVEFTPVEVSIKDTIESLKG

Gene3D: G3DSA:3.40.50.720
IPR016040
19-240 no description
NAD(P)-binding domain

KVVCVTGASGFIASWLVKLLLARGYSVVATVRSLGDPKKTEHLLALDGAKERLSLFEANLTEDGSFDSAVKGCICVFHTASPVHLVVDDPQAQLIDPAVKGTLNVLNSASKVPSLRRVVLTSSMASVLFGAKVPVFGDVVDETWFSDPTVCQKRNSWYCVSKTMAEDAAVKFSQENNMDLVVINPGFVIGPILQPTLNNTSKRFMNFIKTGEDVFSDRVYIL

HMMPfam: PF01370
IPR001509
21-263 Epimerase
NAD-dependent epimerase/dehydratase

VCVTGASGFIASWLVKLLLARGYSVVATVRSLGDPKKTEHLLALDGAKERLSLFEANLTEDGSFDSAVKGCICVFHTASPVHLVVDDPQAQLIDPAVKGTLNVLNSASKVPSLRRVVLTSSMASVLFGAKVPVFGDVVDETWFSDPTVCQKRNSWYCVSKTMAEDAAVKFSQENNMDLVVINPGFVIGPILQPTLNNTSKRFMNFIKTGEDVFSDRVYILVDVRDVAIAHILAFEKPEANGRY






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Analyses

Blast

Blast matches against Reference R-Genes. Show


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