PRGDB00064933 (Aan.24481)

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Aan.24481
Gene Type Putative_R-Genes,_predicted_from_NCBI_UniGene
GenBank 159752327 (EY106595)
Gene Class Unknown
Domain Type
Gene Species Artemisia annua

Comment?

CAZI4825.fwd CAZI Artemisia annua normalized leaf library Artemisia annua cDNA clone CAZI4825 5', mRNA sequence

DNA Sequence

CTGGAGCCAATGGCTTCATAGGCTCATGGCTAGTCCAGACTCTCCTAGACCACGGCTACACAACGATCCACGCCACAATCTATCCAGGCTCGTCCACTAGCCACCTTTACGCTCTCCCTGGCGCCTCACGAGCCACTTTAGTATTCCATGAGGCCGATTTACTTGATGCACAAGCTATCTCCAAGGCTGTAGAGGGATGTTCGGGCGTGTTTCATGTTGCGTCCCCGTGTAGTCTAGAGGATCCATTGGATCCTCAAAAAGAGTTGCTTGATCCTGCTGTTAAGGGTACGTTAAATGTGTTGGAAGCGGCTAAGAGGTTTGGCGTGAGGCGTGTTGTCCTGACTTCTTCTATATCGGCTATGGTTCCAAACCCGAGCTGGGATGATGGCAAGGTGTTGGATGAGTCTTCTTGGACTGATATTGATTACTGCAAGTCTCGCCAGAAATGGTACCCAGTGTCGAAGACATTAGCTGAGAAATCAGCTTGGGAATTCGCCGAGAAGAATGGACTAGATGTGGTAACAATTCTCCCGTCTACATGTCTAGGCCGCCTTTTACAGCCAACATTGAACGCTAGCTGTGCAGTCTTACAACAACTACTGCAAGGATCAAGAAACACACAAGAATA


Protein sequences

Name Description Sequence
Aan.24481 translated coding region predicted by ESTScan from UniGene Aan.24481

XGANGFIGSWLVQTLLDHGYTTIHATIYPGSSTSHLYALPGASRATLVFHEADLLDAQAISKAVEGCSGVFHVASPCSLEDPLDPQKELLDPAVKGTLNVLEAAKRFGVRRVVLTSSISAMVPNPSWDDGKVLDESSWTDIDYCKSRQKWYPVSKTLAEKSAWEFAEKNGLDVVTILPSTCLGRLLQPTLNASCAVLQQLLQGSRNTQEX

Domains

Domain Start-End Description Sequence

HMMPfam: PF01370
IPR001509
2-189 Epimerase
NAD-dependent epimerase/dehydratase

GANGFIGSWLVQTLLDHGYTTIHATIYPGSSTSHLYALPGASRATLVFHEADLLDAQAISKAVEGCSGVFHVASPCSLEDPLDPQKELLDPAVKGTLNVLEAAKRFGVRRVVLTSSISAMVPNPSWDDGKVLDESSWTDIDYCKSRQKWYPVSKTLAEKSAWEFAEKNGLDVVTILPSTCLGRLLQPT

superfamily: SSF51735
2-203 NAD(P)-binding Rossmann-fold domains

GANGFIGSWLVQTLLDHGYTTIHATIYPGSSTSHLYALPGASRATLVFHEADLLDAQAISKAVEGCSGVFHVASPCSLEDPLDPQKELLDPAVKGTLNVLEAAKRFGVRRVVLTSSISAMVPNPSWDDGKVLDESSWTDIDYCKSRQKWYPVSKTLAEKSAWEFAEKNGLDVVTILPSTCLGRLLQPTLNASCAVLQQLLQG

Gene3D: G3DSA:3.40.50.720
IPR016040
2-203 no description
NAD(P)-binding domain

GANGFIGSWLVQTLLDHGYTTIHATIYPGSSTSHLYALPGASRATLVFHEADLLDAQAISKAVEGCSGVFHVASPCSLEDPLDPQKELLDPAVKGTLNVLEAAKRFGVRRVVLTSSISAMVPNPSWDDGKVLDESSWTDIDYCKSRQKWYPVSKTLAEKSAWEFAEKNGLDVVTILPSTCLGRLLQPTLNASCAVLQQLLQG

HMMPanther: PTHR10366
2-207 FAMILY NOT NAMED,NAD DEPENDENT EPIMERASE/DEHYDRATASE

GANGFIGSWLVQTLLDHGYTTIHATIYPGSSTSHLYALPGASRATLVFHEADLLDAQAISKAVEGCSGVFHVASPCSLEDPLDPQKELLDPAVKGTLNVLEAAKRFGVRRVVLTSSISAMVPNPSWDDGKVLDESSWTDIDYCKSRQKWYPVSKTLAEKSAWEFAEKNGLDVVTILPSTCLGRLLQPTLNASCAVLQQLLQGSRNT

HMMPanther: PTHR10366:SF9
2-207 CINNAMOYL-COA REDUCTASE,CINNAMOYL-COA REDUCTASE

GANGFIGSWLVQTLLDHGYTTIHATIYPGSSTSHLYALPGASRATLVFHEADLLDAQAISKAVEGCSGVFHVASPCSLEDPLDPQKELLDPAVKGTLNVLEAAKRFGVRRVVLTSSISAMVPNPSWDDGKVLDESSWTDIDYCKSRQKWYPVSKTLAEKSAWEFAEKNGLDVVTILPSTCLGRLLQPTLNASCAVLQQLLQGSRNT






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Analyses

Blast

Blast matches against Reference R-Genes. Show


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