PRGDB00064946 (Aan.24740)

Aan.24740
Gene Type	Putative_R-Genes,_predicted_from_NCBI_UniGene
GenBank	159781665 (EY109701)
Gene Class	Unknown
Domain Type
Gene Species	Artemisia annua
	Comment?

CAZI6414.fwd CAZI Artemisia annua normalized leaf library Artemisia annua cDNA clone CAZI6414 5', mRNA sequence

DNA Sequence

TATTGTCAACCACAGAAACCAATCCTAGGAGACAGTAACTTCCACAAAGTACAAATGAAAACTCGACAATCACCAGATCAAAAGTTTTGCAGTAGTAGCAGTGCAGCAACATGAGTGGCGTCGGAAAGACAGTTTGTGTTACGGGAGCTTCAGGCTTTGTAGCTTCGAATCTCGTAAAGCTTTTGCTCCAGCAAGGATACTCCGTTAAAGCCTCCGTTCGCTCTCCTAATAATTTAACGAAGACAGAACATTTGCTAAAACTTGATGGAGCTAAGGAAAGGCTTCACCTATTTAAAGCGGACTTACTCGAAAATGGTTCCTTTGATGCTGTCATTGATGGCTGTGATGGTGTTTTCCATACCGCTTCTCCTTTCTTCAATACAGTCACAGATCCACAGAAAGAGTTGATTGAACCTGCAGTGAAAGGAACACTTAATGTCCTTGGTTCTTGTTCAAAAGCTTCATCGGTCAAAAGAGTTGTCGTGACTTCCTCCCTTGCTGCAGCTGTATATAACGCAAGGCCTAAGACCTCTGAAGTTGTAGTTGATGAAACATGGTTTTCTGATCCACAACTTTGTAAAGAAATGAAATGGTGGTATGCGCTATCAAAAACATTGGCTGAAGATGCTGCATGGAAGTTCGCAGAAGAAAAGGGGATGGACATAGTCACCATAAATCCAGCAATGGTTATCGGTCCTCTACTACAGTCAACTCTGAACACTAGTGCTGAAGAAATCGCACAACT

Protein sequences

Name	Description	Sequence
Aan.24740	translated coding region predicted by ESTScan from UniGene Aan.24740	YCQPQKPILGDSNFHKVQMKTRQSPDQKFCSSSSAATXSGVGKTVCVTGASGFVASNLVKLLLQQGYSVKASVRSPNNLTKTEHLLKLDGAKERLHLFKADLLENGSFDAVIDGCDGVFHTASPFFNTVTDPQKELIEPAVKGTLNVLGSCSKASSVKRVVVTSSLAAAVYNARPKTSEVVVDETWFSDPQLCKEMKWWYALSKTLAEDAAWKFAEEKGMDIVTINPAMVIGPLLQSTLNTSAEEIAQL

Domains

Domain	Start-End	Description	Sequence
HMMPanther: PTHR10366:SF9	27-249	CINNAMOYL-COA REDUCTASE,CINNAMOYL-COA REDUCTASE	QKFCSSSSAATXSGVGKTVCVTGASGFVASNLVKLLLQQGYSVKASVRSPNNLTKTEHLLKLDGAKERLHLFKADLLENGSFDAVIDGCDGVFHTASPFFNTVTDPQKELIEPAVKGTLNVLGSCSKASSVKRVVVTSSLAAAVYNARPKTSEVVVDETWFSDPQLCKEMKWWYALSKTLAEDAAWKFAEEKGMDIVTINPAMVIGPLLQSTLNTSAEEIAQL
HMMPanther: PTHR10366	27-249	FAMILY NOT NAMED,NAD DEPENDENT EPIMERASE/DEHYDRATASE	QKFCSSSSAATXSGVGKTVCVTGASGFVASNLVKLLLQQGYSVKASVRSPNNLTKTEHLLKLDGAKERLHLFKADLLENGSFDAVIDGCDGVFHTASPFFNTVTDPQKELIEPAVKGTLNVLGSCSKASSVKRVVVTSSLAAAVYNARPKTSEVVVDETWFSDPQLCKEMKWWYALSKTLAEDAAWKFAEEKGMDIVTINPAMVIGPLLQSTLNTSAEEIAQL
Seg: seg	31-39	seg	SSSSAATXS
superfamily: SSF51735	42-249	NAD(P)-binding Rossmann-fold domains	GKTVCVTGASGFVASNLVKLLLQQGYSVKASVRSPNNLTKTEHLLKLDGAKERLHLFKADLLENGSFDAVIDGCDGVFHTASPFFNTVTDPQKELIEPAVKGTLNVLGSCSKASSVKRVVVTSSLAAAVYNARPKTSEVVVDETWFSDPQLCKEMKWWYALSKTLAEDAAWKFAEEKGMDIVTINPAMVIGPLLQSTLNTSAEEIAQL
Gene3D: G3DSA:3.40.50.720 IPR016040	43-238	no description NAD(P)-binding domain	KTVCVTGASGFVASNLVKLLLQQGYSVKASVRSPNNLTKTEHLLKLDGAKERLHLFKADLLENGSFDAVIDGCDGVFHTASPFFNTVTDPQKELIEPAVKGTLNVLGSCSKASSVKRVVVTSSLAAAVYNARPKTSEVVVDETWFSDPQLCKEMKWWYALSKTLAEDAAWKFAEEKGMDIVTINPAMVIGPLLQST
HMMPfam: PF01370 IPR001509	45-234	Epimerase NAD-dependent epimerase/dehydratase	VCVTGASGFVASNLVKLLLQQGYSVKASVRSPNNLTKTEHLLKLDGAKERLHLFKADLLENGSFDAVIDGCDGVFHTASPFFNTVTDPQKELIEPAVKGTLNVLGSCSKASSVKRVVVTSSLAAAVYNARPKTSEVVVDETWFSDPQLCKEMKWWYALSKTLAEDAAWKFAEEKGMDIVTINPAMVIGPL

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Analyses

Blast

Blast matches against Reference R-Genes. Show