PRGDB00065567 (Afp.121)

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Afp.121
Gene Type Putative_R-Genes,_predicted_from_NCBI_UniGene
GenBank 74552010 (DT753876)
Gene Class Unknown
Domain Type Ser-Thr Kinase
Gene Species Aquilegia formosa x Aquilegia pubescens

Comment?

EST1187725 Aquilegia cDNA library Aquilegia formosa x Aquilegia pubescens cDNA clone CO1XA95, mRNA sequence

DNA Sequence

AGTCTATAATCATGTTTATGGTACAAACCCAAGAATCCCATTTTCCTTGATTTTCATTAGAACTGATACAACTCATATGAATAATATATATATCTTCCATAATGCAAACATATTATTCAGAATCCCGGTTATGTATGAACACCAATAAATGGGGGAAAATAACAAGTCTTTAAAAATATTGAGGAAATGCATCCACCACAACCCAATCCAACAAACAGAACAATCAAAGACCTGTAATGGCTCCATCCAATCACAATGCAACAATAAAAGTATATTATATGATTGAAGACCAAATCTGCAGAAAAAAAGCAAACCATTCACAAAGCGAAACATGTAATATGATGACATCATTTACACATCATCTCATGTCTCAGGAGCTGGGGCAGGAGGCTTCTGATTAAGTAACGGTTGGAGAGCCTTGACGACGATGCTCATGTTTGGCCTGAACTCAGATTCATACTGCACGCACAATGCAGCCACAGCAGCTAGCTTAGCAACTCCTTTTGGTGGATAGTCTCCCTTCAGCTTTGGATCCACACACTGTTTCACCTTGTCCTCACTCAGTCTTGGAGTTGCCCAAGTGACAAGACTCTGCTGTCCACGAGGCATAGTGTGATCAACTGGTTTCCTTCCCGTCAGAAGCTCCAAAAGAACAACACCAAAACTATATACGTCACTCTTTTGCGTCAATTGGCCAGTCATTGCGTACTCAGGCGCATGATAGCCGAAGGTACCCAAAACTCGAGTAGAATGCAAACGAGCCGCCATATCAGGAGCCTGATTTAATAGATTAAAGTCTGCTATTTTGGCTTTGAAATCTTCAAACAGAAGTACATTGCTTGATCTGATGTCCCTATGTATTATAGATGGTTGAATTCTCTCATGCAGATACTCCAATCCCCTTGCTGCCTCAACTGCGATTCTCACTCGCT


Protein sequences

Name Description Sequence
Afp.121 translated coding region predicted by ESTScan from UniGene Afp.121

XRVRIAVEAARGLEYLHERIQPSIIHRDIRSSNVLLFEDFKAKIADFNLLNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLTQKSDVYSFGVVLLELLTGRKPVDHTMPRGQQSLVTWATPRLSEDKVKQCVDPKLKGDYPPKGVAKLAAVAALCVQYESEFRPNMSIVVKALQPLLNQKPPAPAPET

Domains

Domain Start-End Description Sequence

ProfileScan: PS50011
IPR000719
1-178 PROTEIN_KINASE_DOM
Protein kinase, catalytic domain

XRVRIAVEAARGLEYLHERIQPSIIHRDIRSSNVLLFEDFKAKIADFNLLNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLTQKSDVYSFGVVLLELLTGRKPVDHTMPRGQQSLVTWATPRLSEDKVKQCVDPKLKGDYPPKGVAKLAAVAALCVQYESEFRPNMSIVVKALQPLL

HMMSmart: SM00219
IPR020635
1-174 Tyrosine kinase, catalytic domain
Tyrosine-protein kinase, catalytic domain

XRVRIAVEAARGLEYLHERIQPSIIHRDIRSSNVLLFEDFKAKIADFNLLNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLTQKSDVYSFGVVLLELLTGRKPVDHTMPRGQQSLVTWATPRLSEDKVKQCVDPKLKGDYPPKGVAKLAAVAALCVQYESEFRPNMSIVVKAL

Gene3D: G3DSA:1.10.510.10
2-173 no description

RVRIAVEAARGLEYLHERIQPSIIHRDIRSSNVLLFEDFKAKIADFNLLNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLTQKSDVYSFGVVLLELLTGRKPVDHTMPRGQQSLVTWATPRLSEDKVKQCVDPKLKGDYPPKGVAKLAAVAALCVQYESEFRPNMSIVVKA

HMMPanther: PTHR24420:SF416
2-187 SUBFAMILY NOT NAMED,SUBFAMILY NOT NAMED

RVRIAVEAARGLEYLHERIQPSIIHRDIRSSNVLLFEDFKAKIADFNLLNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLTQKSDVYSFGVVLLELLTGRKPVDHTMPRGQQSLVTWATPRLSEDKVKQCVDPKLKGDYPPKGVAKLAAVAALCVQYESEFRPNMSIVVKALQPLLNQKPPAPAP

HMMPanther: PTHR24420
2-187 FAMILY NOT NAMED,FAMILY NOT NAMED

RVRIAVEAARGLEYLHERIQPSIIHRDIRSSNVLLFEDFKAKIADFNLLNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLTQKSDVYSFGVVLLELLTGRKPVDHTMPRGQQSLVTWATPRLSEDKVKQCVDPKLKGDYPPKGVAKLAAVAALCVQYESEFRPNMSIVVKALQPLLNQKPPAPAP

superfamily: SSF56112
IPR011009
2-182 Protein kinase-like (PK-like)
Protein kinase-like domain

RVRIAVEAARGLEYLHERIQPSIIHRDIRSSNVLLFEDFKAKIADFNLLNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLTQKSDVYSFGVVLLELLTGRKPVDHTMPRGQQSLVTWATPRLSEDKVKQCVDPKLKGDYPPKGVAKLAAVAALCVQYESEFRPNMSIVVKALQPLLNQKP

HMMSmart: SM00220
IPR002290
2-178 Serine/Threonine protein kinases, catalytic
Serine/threonine- / dual-specificity protein kinas

RVRIAVEAARGLEYLHERIQPSIIHRDIRSSNVLLFEDFKAKIADFNLLNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLTQKSDVYSFGVVLLELLTGRKPVDHTMPRGQQSLVTWATPRLSEDKVKQCVDPKLKGDYPPKGVAKLAAVAALCVQYESEFRPNMSIVVKALQPLL

HMMPfam: PF07714
IPR001245
3-174 Pkinase_Tyr
Serine-threonine/tyrosine-protein kinase

VRIAVEAARGLEYLHERIQPSIIHRDIRSSNVLLFEDFKAKIADFNLLNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLTQKSDVYSFGVVLLELLTGRKPVDHTMPRGQQSLVTWATPRLSEDKVKQCVDPKLKGDYPPKGVAKLAAVAALCVQYESEFRPNMSIVVKAL

PatternScan: PS00109
IPR008266
24-36 PROTEIN_KINASE_TYR
Tyrosine-protein kinase, active site

IIHRDIRSSNVLL

Seg: seg
142-155 seg

PPKGVAKLAAVAAL






List of Contributions

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Analyses

Blast

Blast matches against Reference R-Genes. Show


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