PRGDB00065572 (Afp.200)

From PRG Wiki
Jump to: navigation, search
Afp.200
Gene Type Putative_R-Genes,_predicted_from_NCBI_UniGene
GenBank 71716867 (DR947504)
Gene Class Unknown
Domain Type Ser-Thr Kinase
Gene Species Aquilegia formosa x Aquilegia pubescens

Comment?

EST1139043 Aquilegia cDNA library Aquilegia formosa x Aquilegia pubescens cDNA clone CO1R563, mRNA sequence

DNA Sequence

ACTAAACCATACATACCACAAACTTCCTATGTCAAGAAACTACAAAACCCATTATCTTTCCTTAACATCAATCTAAGCATCAAAACATGCACATGTAATAAGATTTAAGGATAAGTACGGTCTTCACTGTCCTCAACACTCTCCTTAAGTGCTACTGTTGGTCACTCACTACTCCTGAACAACACAAGCCTTCAAAACGGGAAGAAAGCGAACTTCATTAAACACATTCAGACCATTCCTCCAACACCACCTGAAACATCAGAGCTACAAAATAATTAACAAGCTTAAAGTCATAGTTCAGCGGGATCCAACACGCTCAAGGTTCTCTGAAACAGTTTTCATCCTTGGCCGCATTTCTGGTACTATTTCTGTGCAATTGAGTGCAATATGGAAAACTTCAAGCACTTGTTTCTTGGCAGAAACTTCATGCATAAGTGCTGGGTCTATAATCTCCGAAAGAGGTCGCTGCTCCCGAAAGGCCCTCCTTACATAACACTCCAACTCTTTATAGTCTTTCTCTGGTCCTGCTTGTGGTAGGCGACCAGTCAGAAGCTCCAACACTACAATACCAAAGGAATACACATCACATTTCTGAGTCATTCTGCTTCCGGAGATTCGAGCTTCTGGAGCCAAGTAGCTAAGAGAGGGAGACGTTGAGGTGTTTGACCCAATCCCCAGAGATACAACAGTATGAGTAGAGATCTGCTTTCTGGAAATGACATCTGATGATCTGTTGGTGCTGGAGACAAGACGGGTGAGGCCAAACCCTGAGATATATGGTTGAAGATCATCATCAAGAAGTATCTTGGATGATTTAATGTTCCCATGCACATACTTCCGCAGATTGCATTCATGAATATACATAAGACCTCTAGCTGTGCCTTGAGCAATTCTCAACCGAGCAGCCCATGATAAAGCTGACAGACAATTTGAAGGCCCTCCATGCAGAGCAGAGTACAAGCTACC


Protein sequences

Name Description Sequence
Afp.200 translated coding region predicted by ESTScan from UniGene Afp.200

GSLYSALHGGPSNCLSALSWAARLRIAQGTARGLMYIHECNLRKYVHGNIKSSKILLDDDLQPYISGFGLTRLVSSTNRSSDVISRKQISTHTVVSLGIGSNTSTSPSLSYLAPEARISGSRMTQKCDVYSFGIVVLELLTGRLPQAGPEKDYKELECYVRRAFREQRPLSEIIDPALMHEVSAKKQVLEVFHIALNCTEIVPEMRPRMKTVSENLERVGSR

Domains

Domain Start-End Description Sequence

HMMPanther: PTHR24420:SF927
1-219 SUBFAMILY NOT NAMED

GSLYSALHGGPSNCLSALSWAARLRIAQGTARGLMYIHECNLRKYVHGNIKSSKILLDDDLQPYISGFGLTRLVSSTNRSSDVISRKQISTHTVVSLGIGSNTSTSPSLSYLAPEARISGSRMTQKCDVYSFGIVVLELLTGRLPQAGPEKDYKELECYVRRAFREQRPLSEIIDPALMHEVSAKKQVLEVFHIALNCTEIVPEMRPRMKTVSENLERV

HMMPanther: PTHR24420
1-219 FAMILY NOT NAMED,FAMILY NOT NAMED

GSLYSALHGGPSNCLSALSWAARLRIAQGTARGLMYIHECNLRKYVHGNIKSSKILLDDDLQPYISGFGLTRLVSSTNRSSDVISRKQISTHTVVSLGIGSNTSTSPSLSYLAPEARISGSRMTQKCDVYSFGIVVLELLTGRLPQAGPEKDYKELECYVRRAFREQRPLSEIIDPALMHEVSAKKQVLEVFHIALNCTEIVPEMRPRMKTVSENLERV

superfamily: SSF56112
IPR011009
1-216 Protein kinase-like (PK-like)
Protein kinase-like domain

GSLYSALHGGPSNCLSALSWAARLRIAQGTARGLMYIHECNLRKYVHGNIKSSKILLDDDLQPYISGFGLTRLVSSTNRSSDVISRKQISTHTVVSLGIGSNTSTSPSLSYLAPEARISGSRMTQKCDVYSFGIVVLELLTGRLPQAGPEKDYKELECYVRRAFREQRPLSEIIDPALMHEVSAKKQVLEVFHIALNCTEIVPEMRPRMKTVSENL

ProfileScan: PS50011
IPR000719
1-196 PROTEIN_KINASE_DOM
Protein kinase, catalytic domain

GSLYSALHGGPSNCLSALSWAARLRIAQGTARGLMYIHECNLRKYVHGNIKSSKILLDDDLQPYISGFGLTRLVSSTNRSSDVISRKQISTHTVVSLGIGSNTSTSPSLSYLAPEARISGSRMTQKCDVYSFGIVVLELLTGRLPQAGPEKDYKELECYVRRAFREQRPLSEIIDPALMHEVSAKKQVLEVFHIAL

Gene3D: G3DSA:1.10.510.10
1-216 no description

GSLYSALHGGPSNCLSALSWAARLRIAQGTARGLMYIHECNLRKYVHGNIKSSKILLDDDLQPYISGFGLTRLVSSTNRSSDVISRKQISTHTVVSLGIGSNTSTSPSLSYLAPEARISGSRMTQKCDVYSFGIVVLELLTGRLPQAGPEKDYKELECYVRRAFREQRPLSEIIDPALMHEVSAKKQVLEVFHIALNCTEIVPEMRPRMKTVSENL

HMMSmart: SM00220
IPR002290
1-219 Serine/Threonine protein kinases, catalytic
Serine/threonine- / dual-specificity protein kinas

GSLYSALHGGPSNCLSALSWAARLRIAQGTARGLMYIHECNLRKYVHGNIKSSKILLDDDLQPYISGFGLTRLVSSTNRSSDVISRKQISTHTVVSLGIGSNTSTSPSLSYLAPEARISGSRMTQKCDVYSFGIVVLELLTGRLPQAGPEKDYKELECYVRRAFREQRPLSEIIDPALMHEVSAKKQVLEVFHIALNCTEIVPEMRPRMKTVSENLERV

HMMSmart: SM00219
IPR020635
1-216 Tyrosine kinase, catalytic domain
Tyrosine-protein kinase, catalytic domain

GSLYSALHGGPSNCLSALSWAARLRIAQGTARGLMYIHECNLRKYVHGNIKSSKILLDDDLQPYISGFGLTRLVSSTNRSSDVISRKQISTHTVVSLGIGSNTSTSPSLSYLAPEARISGSRMTQKCDVYSFGIVVLELLTGRLPQAGPEKDYKELECYVRRAFREQRPLSEIIDPALMHEVSAKKQVLEVFHIALNCTEIVPEMRPRMKTVSENL

HMMPfam: PF00069
IPR017442
17-212 Pkinase,Ser-thr
Serine/threonine-protein kinase-like domain

ALSWAARLRIAQGTARGLMYIHECNLRKYVHGNIKSSKILLDDDLQPYISGFGLTRLVSSTNRSSDVISRKQISTHTVVSLGIGSNTSTSPSLSYLAPEARISGSRMTQKCDVYSFGIVVLELLTGRLPQAGPEKDYKELECYVRRAFREQRPLSEIIDPALMHEVSAKKQVLEVFHIALNCTEIVPEMRPRMKTV






List of Contributions

There has not been any contribution yet.


Analyses

Blast

Blast matches against Reference R-Genes. Show


Personal tools
Namespaces

Variants
Actions
PRGDB
META-SPECIES
Wiki
Toolbox