PRGDB00065580 (Afp.592)
| Afp.592 | |
|---|---|
| Gene Type | Putative_R-Genes,_predicted_from_NCBI_UniGene |
| GenBank | 74524228 (DT736332) |
| Gene Class | N |
| Domain Type | NBS |
| Gene Species | Aquilegia formosa x Aquilegia pubescens |
DNA Sequence
GATTTATGCTATTACCAACTCTCCTTCTCAGTGGTGTTGGTTTTCATTAATGGAGATTGAGAACACAAGTGCAAGTGTTGATACAGGTTTTACATTTAGGAGAGATGAATCTGCGGCATTCTTGGTGTGGGAAGATTTGAATGTAGCGCTTAACAGCTTCGGAGATGGTCCAACGAAAAGGATACTCCATGGACTTACTGGGTGTGCTGAACCTGGTAGGATTTTGGGTATTATGGGTCCTTCAGGATCAGGCAAATCTACTCTTCTTGATTCTTTGGCAGGGAGACTCTCAAGTAATGTGATTATGACTGGAAGTATTCTACTCAATGGAAAGAAAAGAAGGCTTGGTTATGGATCCTTTGCTTATGTAACTCAAGAAGATGTATTGTTAGGCACTCTGTCAGTTAGAGAAACTATTACTTACTCTGCTCATTTGAGACTTCCAAGTAGCATGAGCAAAGGAGACATAATGGGAATAGTAGACAACACTATTATGGAAATGGGACTTCAAGATTGTGCAGATACAGTGGTTGGTAATTGGCATTTAAGAGGTCTAAGTGGTGGAGAGAAGAAGAGATTAAGTATTGCTTTAGAAATTCTTACAAGGCCTCCTCTTTTGTTTCTTGATGAACCTACAAGTGGACTTGATAGTGCATCAGCTTTCTTTGTTATTCAAACTATAAGAAACATAGCTCGCGATGGAAGAACTGTTGTATCTTCTATTCATCAACCTAGTAGTGAAGTTTTCGCACAATTTGATGATTTGGTCCTTCTTTCGGGTGGTGAAACTGTTTATTTTGGTGACGCAAAGATGGCTGTCCAGTTCTTTGCTGAAGCTGGATTCCCTTGTCCAAGCAGAGAAACCCTTCTGATCATTTCCTTCGATGTATCACACAGATTTTGACGTGTTACTGCACTCTATAGGATCTCAAGA
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| Afp.592 | translated coding region predicted by ESTScan from UniGene Afp.592 | XIYAITNSPSQWCWFSLMEIENTSASVDTGFTFRRDESAAFLVWEDLNVALNSFGDGPTKRILHGLTGCAEPGRILGIMGPSGSGKSTLLDSLAGRLSSNVIMTGSILLNGKKRRLGYGSFAYVTQEDVLLGTLSVRETITYSAHLRLPSSMSKGDIMGIVDNTIMEMGLQDCADTVVGNWHLRGLSGGEKKRLSIALEILTRPPLLFLDEPTSGLDSASAFFVIQTIRNIARDGRTVVSSIHQPSSEVFAQFDDLVLLSGGETVYFGDAKMAVQFFAEAGFPCPSRETLLIISFDVSHRFXRVTALYRISR |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| HMMPanther: PTHR19241:SF20 | 34-287 | ATP-BINDING CASSETTE TRANSPORTER PLANT,ATP-BINDING CASSETTE TRANSPORTER PLANT | RRDESAAFLVWEDLNVALNSFGDGPTKRILHGLTGCAEPGRILGIMGPSGSGKSTLLDSLAGRLSSNVIMTGSILLNGKKRRLGYGSFAYVTQEDVLLGTLSVRETITYSAHLRLPSSMSKGDIMGIVDNTIMEMGLQDCADTVVGNWHLRGLSGGEKKRLSIALEILTRPPLLFLDEPTSGLDSASAFFVIQTIRNIARDGRTVVSSIHQPSSEVFAQFDDLVLLSGGETVYFGDAKMAVQFFAEAGFPCPSR |
| HMMPanther: PTHR19241 | 34-287 | FAMILY NOT NAMED,ATP-BINDING CASSETTE TRANSPORTER | RRDESAAFLVWEDLNVALNSFGDGPTKRILHGLTGCAEPGRILGIMGPSGSGKSTLLDSLAGRLSSNVIMTGSILLNGKKRRLGYGSFAYVTQEDVLLGTLSVRETITYSAHLRLPSSMSKGDIMGIVDNTIMEMGLQDCADTVVGNWHLRGLSGGEKKRLSIALEILTRPPLLFLDEPTSGLDSASAFFVIQTIRNIARDGRTVVSSIHQPSSEVFAQFDDLVLLSGGETVYFGDAKMAVQFFAEAGFPCPSR |
| superfamily: SSF52540 | 41-290 | P-loop containing nucleoside triphosphate hydrolases | FLVWEDLNVALNSFGDGPTKRILHGLTGCAEPGRILGIMGPSGSGKSTLLDSLAGRLSSNVIMTGSILLNGKKRRLGYGSFAYVTQEDVLLGTLSVRETITYSAHLRLPSSMSKGDIMGIVDNTIMEMGLQDCADTVVGNWHLRGLSGGEKKRLSIALEILTRPPLLFLDEPTSGLDSASAFFVIQTIRNIARDGRTVVSSIHQPSSEVFAQFDDLVLLSGGETVYFGDAKMAVQFFAEAGFPCPSRETL |
| ProfileScan: PS50893 IPR003439
|
42-286 | ABC_TRANSPORTER_2 ABC transporter-like
|
LVWEDLNVALNSFGDGPTKRILHGLTGCAEPGRILGIMGPSGSGKSTLLDSLAGRLSSNVIMTGSILLNGKKRRLGYGSFAYVTQEDVLLGTLSVRETITYSAHLRLPSSMSKGDIMGIVDNTIMEMGLQDCADTVVGNWHLRGLSGGEKKRLSIALEILTRPPLLFLDEPTSGLDSASAFFVIQTIRNIARDGRTVVSSIHQPSSEVFAQFDDLVLLSGGETVYFGDAKMAVQFFAEAGFPCPS |
| Gene3D: G3DSA:3.40.50.300 | 44-271 | no description | WEDLNVALNSFGDGPTKRILHGLTGCAEPGRILGIMGPSGSGKSTLLDSLAGRLSSNVIMTGSILLNGKKRRLGYGSFAYVTQEDVLLGTLSVRETITYSAHLRLPSSMSKGDIMGIVDNTIMEMGLQDCADTVVGNWHLRGLSGGEKKRLSIALEILTRPPLLFLDEPTSGLDSASAFFVIQTIRNIARDGRTVVSSIHQPSSEVFAQFDDLVLLSGGETVYFGDAK |
| HMMSmart: SM00382 IPR003593
|
72-243 | ATPases associated with a variety of cellula,NBS AAA+ ATPase domain
|
PGRILGIMGPSGSGKSTLLDSLAGRLSSNVIMTGSILLNGKKRRLGYGSFAYVTQEDVLLGTLSVRETITYSAHLRLPSSMSKGDIMGIVDNTIMEMGLQDCADTVVGNWHLRGLSGGEKKRLSIALEILTRPPLLFLDEPTSGLDSASAFFVIQTIRNIARDGRTVVSSIH |
| HMMPfam: PF00005 IPR003439
|
87-214 | ABC_tran ABC transporter-like
|
STLLDSLAGRLSSNVIMTGSILLNGKKRRLGYGSFAYVTQEDVLLGTLSVRETITYSAHLRLPSSMSKGDIMGIVDNTIMEMGLQDCADTVVGNWHLRGLSGGEKKRLSIALEILTRPPLLFLDEPTS |
| PatternScan: PS00211 IPR017871
|
186-200 | ABC_TRANSPORTER_1 ABC transporter, conserved site
|
LSGGEKKRLSIALEI |
List of Contributions
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