PRGDB00065581 (Afp.649)
| Afp.649 | |
|---|---|
| Gene Type | Putative_R-Genes,_predicted_from_NCBI_UniGene |
| GenBank | 74554691 (DT755374) |
| Gene Class | Unknown |
| Domain Type | LRR |
| Gene Species | Aquilegia formosa x Aquilegia pubescens |
DNA Sequence
ACTTGGTGGATTGATTGCACTGAATCTGTCAGGCAATGAGTTAAAGGCCTTACCTGATTCAATTCGGCGGACTAGAACGCCTGGAGGAGCTTTATCTTTCATCTAACCGTTTGGAATCACTGCCAGATTCCATTGGAAAGTTACTTAACCTGAAAATCCTGGATGTATCCTCCAACAAACTTAAGGCCTTTCCTGACAGTATCTCTCATTGCAGATCACTGGTGGAGCTGGACGCAGGCTACAATTCTCTAGCATACTTGCCAACTAACATTGGATATGAATTGGTCAATCTGATCAGGCTCTCTGTTCAATATAATAAGCTCCGTTCATTTCCAAGTTCCATCTGTGAGATGACGTCTTTACGCTATTTGGATGCACACTTTAATGAGCTTCATGGTCTTCCAAATTCTGTTGGGAGATTGACAAATCTAGAGGTCCTTAATCTCGGCAGTAATTTCAGTGACCTCAAAGAGCTTCCTGATACATTTGGTTATCTGATCAATCTTAAGGAACTTGATCTTAGCAACAACCAGATTCATGCTCTTCCAATTACATTTGGTCGGCTTGACAATCTAACCAAGCTTAACCTGGACCAGAACCCAATTGTCACTCCTCCTGTGGAGATTGTAAATAATGGGGTTGAAGCTGTTAAAGAGTTCATGGCAAAGAGGTGGCTCGATATTCTAGTTGAGGAAGAGGAGAAGAGCATGGCTGAAGAAAATAATGGGTGGTTGCAACGCAGCACTTCATTGCTGACAAGGAGCACGTCGATGTTGAAAAGCTATGCTTCTAATGTATCGGAGAGTGTTACTGAATATTTGGGGTGGAGGAGTTAAATCCCCAAGAGACCCATATCTCGATCAGCAGTTGTGAGCTTGCCATCAGTTTCTGATATCACGCGAGCACCGCTTTCTTACTTACATAGTATAATAGTTTGCTATTATAATTCAACTGCTTAAGTCAC
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| Afp.649 | translated coding region predicted by ESTScan from UniGene Afp.649 | XLGGLIALNLSGNELKALPDQFGGLERLEELYLSSNRLESLPDSIGKLLNLKILDVSSNKLKAFPDSISHCRSLVELDAGYNSLAYLPTNIGYELVNLIRLSVQYNKLRSFPSSICEMTSLRYLDAHFNELHGLPNSVGRLTNLEVLNLGSNFSDLKELPDTFGYLINLKELDLSNNQIHALPITFGRLDNLTKLNLDQNPIVTPPVEIVNNGVEAVKEFMAKRWLDILVEEEEKSMAEENNGWLQRSTSLLTRSTSMLKSYASNVSESVTEYLGWRS |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| superfamily: SSF52058 | 1-205 | L domain-like,LRR | XLGGLIALNLSGNELKALPDQFGGLERLEELYLSSNRLESLPDSIGKLLNLKILDVSSNKLKAFPDSISHCRSLVELDAGYNSLAYLPTNIGYELVNLIRLSVQYNKLRSFPSSICEMTSLRYLDAHFNELHGLPNSVGRLTNLEVLNLGSNFSDLKELPDTFGYLINLKELDLSNNQIHALPITFGRLDNLTKLNLDQNPIVTP |
| HMMSmart: SM00364 | 2-21 | Leucine-rich repeats, bacterial type | LGGLIALNLSGNELKALPDQ |
| HMMSmart: SM00369 IPR003591
|
2-24 | Leucine-rich repeats, typical (most populate Leucine-rich repeat, typical subtype
|
LGGLIALNLSGNELKALPDQFGG |
| Gene3D: G3DSA:3.80.10.10 | 4-77 | no description | GLIALNLSGNELKALPDQFGGLERLEELYLSSNRLESLPDSIGKLLNLKILDVSSNKLKAFPDSISHCRSLVEL |
| HMMPanther: PTHR23155:SF34 | 4-273 | LEUCINE-RICH REPEAT-CONTAINING PROTEIN,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN | GLIALNLSGNELKALPDQFGGLERLEELYLSSNRLESLPDSIGKLLNLKILDVSSNKLKAFPDSISHCRSLVELDAGYNSLAYLPTNIGYELVNLIRLSVQYNKLRSFPSSICEMTSLRYLDAHFNELHGLPNSVGRLTNLEVLNLGSNFSDLKELPDTFGYLINLKELDLSNNQIHALPITFGRLDNLTKLNLDQNPIVTPPVEIVNNGVEAVKEFMAKRWLDILVEEEEKSMAEENNGWLQRSTSLLTRSTSMLKSYASNVSESVTEY |
| HMMPanther: PTHR23155 | 4-273 | FAMILY NOT NAMED,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN | GLIALNLSGNELKALPDQFGGLERLEELYLSSNRLESLPDSIGKLLNLKILDVSSNKLKAFPDSISHCRSLVELDAGYNSLAYLPTNIGYELVNLIRLSVQYNKLRSFPSSICEMTSLRYLDAHFNELHGLPNSVGRLTNLEVLNLGSNFSDLKELPDTFGYLINLKELDLSNNQIHALPITFGRLDNLTKLNLDQNPIVTPPVEIVNNGVEAVKEFMAKRWLDILVEEEEKSMAEENNGWLQRSTSLLTRSTSMLKSYASNVSESVTEY |
| ProfileScan: PS51450 IPR001611
|
4-25 | LRR,Leucine-rich repeat profile. Leucine-rich repeat
|
GLIALNLSGNELKALPDQFGGL |
| HMMPfam: PF00560 IPR001611
|
5-25 | LRR_1 Leucine-rich repeat
|
LIALNLSGNELKALPDQFGGL |
| HMMSmart: SM00369 IPR003591
|
25-47 | Leucine-rich repeats, typical (most populate Leucine-rich repeat, typical subtype
|
LERLEELYLSSNRLESLPDSIGK |
| HMMSmart: SM00365 | 25-43 | Leucine-rich repeat, SDS22-like subfamily | LERLEELYLSSNRLESLPD |
| HMMSmart: SM00364 | 25-44 | Leucine-rich repeats, bacterial type | LERLEELYLSSNRLESLPDS |
| ProfileScan: PS51450 IPR001611
|
27-48 | LRR,Leucine-rich repeat profile. Leucine-rich repeat
|
RLEELYLSSNRLESLPDSIGKL |
| HMMPfam: PF13855 | 27-84 | LRR_8,Leucine rich repeat | RLEELYLSSNRLESLPDSIGKLLNLKILDVSSNKLKAFPDSISHCRSLVELDAGYNSL |
| HMMSmart: SM00365 | 48-70 | Leucine-rich repeat, SDS22-like subfamily | LLNLKILDVSSNKLKAFPDSISH |
| HMMSmart: SM00364 | 48-67 | Leucine-rich repeats, bacterial type | LLNLKILDVSSNKLKAFPDS |
| HMMSmart: SM00369 IPR003591
|
48-71 | Leucine-rich repeats, typical (most populate Leucine-rich repeat, typical subtype
|
LLNLKILDVSSNKLKAFPDSISHC |
| ProfileScan: PS51450 IPR001611
|
50-71 | LRR,Leucine-rich repeat profile. Leucine-rich repeat
|
NLKILDVSSNKLKAFPDSISHC |
| FPrintScan: PR00019 | 51-64 | LEURICHRPT,Leucine-rich repeat signature | LKILDVSSNKLKAF |
| HMMSmart: SM00364 | 71-90 | Leucine-rich repeats, bacterial type | CRSLVELDAGYNSLAYLPTN |
| HMMSmart: SM00369 IPR003591
|
72-94 | Leucine-rich repeats, typical (most populate Leucine-rich repeat, typical subtype
|
RSLVELDAGYNSLAYLPTNIGYE |
| ProfileScan: PS51450 IPR001611
|
73-94 | LRR,Leucine-rich repeat profile. Leucine-rich repeat
|
SLVELDAGYNSLAYLPTNIGYE |
| Gene3D: G3DSA:3.80.10.10 | 78-207 | no description | DAGYNSLAYLPTNIGYELVNLIRLSVQYNKLRSFPSSICEMTSLRYLDAHFNELHGLPNSVGRLTNLEVLNLGSNFSDLKELPDTFGYLINLKELDLSNNQIHALPITFGRLDNLTKLNLDQNPIVTPPV |
| HMMSmart: SM00369 IPR003591
|
95-118 | Leucine-rich repeats, typical (most populate Leucine-rich repeat, typical subtype
|
LVNLIRLSVQYNKLRSFPSSICEM |
| HMMSmart: SM00364 | 95-114 | Leucine-rich repeats, bacterial type | LVNLIRLSVQYNKLRSFPSS |
| HMMSmart: SM00365 | 95-126 | Leucine-rich repeat, SDS22-like subfamily | LVNLIRLSVQYNKLRSFPSSICEMTSLRYLDA |
| ProfileScan: PS51450 IPR001611
|
97-118 | LRR,Leucine-rich repeat profile. Leucine-rich repeat
|
NLIRLSVQYNKLRSFPSSICEM |
| HMMPfam: PF13504 | 119-135 | LRR_7,Leucine rich repeat | TSLRYLDAHFNELHGLP |
| ProfileScan: PS51450 IPR001611
|
120-141 | LRR,Leucine-rich repeat profile. Leucine-rich repeat
|
SLRYLDAHFNELHGLPNSVGRL |
| HMMSmart: SM00364 | 120-137 | Leucine-rich repeats, bacterial type | SLRYLDAHFNELHGLPNS |
| HMMSmart: SM00369 IPR003591
|
141-165 | Leucine-rich repeats, typical (most populate Leucine-rich repeat, typical subtype
|
LTNLEVLNLGSNFSDLKELPDTFGY |
| HMMSmart: SM00364 | 141-162 | Leucine-rich repeats, bacterial type | LTNLEVLNLGSNFSDLKELPDT |
| HMMPfam: PF13855 | 142-202 | LRR_8,Leucine rich repeat | TNLEVLNLGSNFSDLKELPDTFGYLINLKELDLSNNQIHALPITFGRLDNLTKLNLDQNPI |
| ProfileScan: PS51450 IPR001611
|
143-163 | LRR,Leucine-rich repeat profile. Leucine-rich repeat
|
NLEVLNLGSNFSDLKELPDTF |
| FPrintScan: PR00019 | 166-179 | LEURICHRPT,Leucine-rich repeat signature | LINLKELDLSNNQI |
| HMMSmart: SM00364 | 166-185 | Leucine-rich repeats, bacterial type | LINLKELDLSNNQIHALPIT |
| HMMSmart: SM00369 IPR003591
|
166-188 | Leucine-rich repeats, typical (most populate Leucine-rich repeat, typical subtype
|
LINLKELDLSNNQIHALPITFGR |
| HMMSmart: SM00365 | 166-194 | Leucine-rich repeat, SDS22-like subfamily | LINLKELDLSNNQIHALPITFGRLDNLTK |
| ProfileScan: PS51450 IPR001611
|
168-189 | LRR,Leucine-rich repeat profile. Leucine-rich repeat
|
NLKELDLSNNQIHALPITFGRL |
| HMMSmart: SM00369 IPR003591
|
189-212 | Leucine-rich repeats, typical (most populate Leucine-rich repeat, typical subtype
|
LDNLTKLNLDQNPIVTPPVEIVNN |
| ProfileScan: PS51450 IPR001611
|
191-212 | LRR,Leucine-rich repeat profile. Leucine-rich repeat
|
NLTKLNLDQNPIVTPPVEIVNN |
| Seg: seg | 231-240 | seg | EEEEKSMAEE |
| Seg: seg | 247-257 | seg | RSTSLLTRSTS |
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