PRGDB00065585 (Afp.1087)
Afp.1087 | |
---|---|
Gene Type | Putative_R-Genes,_predicted_from_NCBI_UniGene |
GenBank | 71722001 (DR952638) |
Gene Class | Unknown |
Domain Type | LRR |
Gene Species | Aquilegia formosa x Aquilegia pubescens |
DNA Sequence
GTTAGAGAACGTGGATGATGAGAGTGTGAAAATGCATGATGTGATTAGAGAATTAGCTTTATGGATCACTGGGAGAGATGAAGGTAAGGTTATTGTGAAGTCAGGTTACAACTTGAAAGAATTCCCCATAATTGATTTACATCCGACAGTGGTGGAAACAATATCCTTGATGAATACTGGAATCACTCATCTTGAAAAATTACCAAGCTGCCGAAACCTTTCAAACTTCTTTGCTCCCTATAATAATGATTTAAACCATATAAATGACGACTTTTTCCTTTCTATGCCCAATCTTAAGTTCTTAGATCTATCATCCAGTAAAATCACAAAACTACCCACAAGCATTCGTGAATTGTCTGAGTTGAAAGTCCTTAATTTGCTTGGAAGAGAGGGTTCAATTCCACGGGGAATGATAATGAATTTTTCGAATTTGGAGTTCTTGGAGTTGGATGTTTTAAAATCTGATGATTCTTCAGAGGAATTTTTCGAATTTGAAGAATTCAGATGCTTGAAAAAATTGAAATATCTGGGAATCTTTATTTCAGATTTCAAAGATCTTGAGAGGTTACTAAGCAACCCCCACTTGTGTAATTGTCTAAGGACTTTGGGTATTAAAAATTGCAAAGAGATTACCTTACCCACACTTTCATCATCGTATTTATCTCTTGGACGTCTTCAAAAACTGCAAGTTCTTCAAATTCTTAACTGTTCAGAGATCAAAGAGTGGATATTTGATTGCATCACAAATGATGATGAGCCAGAGATTGGGTTATTTGAAAGCTTGGAGACAATGGTCCTCGTCGATCTCCCCGAATTAATTATCTCATGGGATGCAAGGAATCTCCATTGTACACATTTCAGAAAACTCCATTACTAATATCTTTCATTGGTGTCACGCAATGGTGAATCTTACAT
Protein sequences
Name | Description | Sequence |
---|---|---|
Afp.1087 | translated coding region predicted by ESTScan from UniGene Afp.1087 | XLENVDDESVKMHDVIRELALWITGRDEGKVIVKSGYNLKEFPIIDLHPTVVETISLMNTGITHLEKLPSCRNLSNFFAPYNNDLNHINDDFFLSMPNLKFLDLSSSKITKLPTSIRELSELKVLNLLGREGSIPRGMIMNFSNLEFLELDVLKSDDSSEEFFEFEEFRCLKKLKYLGIFISDFKDLERLLSNPHLCNCLRTLGIKNCKEITLPTLSSSYLSLGRLQKLQVLQILNCSEIKEWIFDCITNDDEPEIGLFESLETMVLVDLPELIISWDARNLHCTHFRKLHY |
Domains
Domain | Start-End | Description | Sequence
|
---|---|---|---|
superfamily: SSF52058 | 11-292 | L domain-like,LRR | KMHDVIRELALWITGRDEGKVIVKSGYNLKEFPIIDLHPTVVETISLMNTGITHLEKLPSCRNLSNFFAPYNNDLNHINDDFFLSMPNLKFLDLSSSKITKLPTSIRELSELKVLNLLGREGSIPRGMIMNFSNLEFLELDVLKSDDSSEEFFEFEEFRCLKKLKYLGIFISDFKDLERLLSNPHLCNCLRTLGIKNCKEITLPTLSSSYLSLGRLQKLQVLQILNCSEIKEWIFDCITNDDEPEIGLFESLETMVLVDLPELIISWDARNLHCTHFRKLHY |
Gene3D: G3DSA:3.80.10.10 | 52-249 | no description | VETISLMNTGITHLEKLPSCRNLSNFFAPYNNDLNHINDDFFLSMPNLKFLDLSSSKITKLPTSIRELSELKVLNLLGREGSIPRGMIMNFSNLEFLELDVLKSDDSSEEFFEFEEFRCLKKLKYLGIFISDFKDLERLLSNPHLCNCLRTLGIKNCKEITLPTLSSSYLSLGRLQKLQVLQILNCSEIKEWIFDCIT |
HMMPfam: PF13855 | 97-150 | LRR_8,Leucine rich repeat | PNLKFLDLSSSKITKLPTSIRELSELKVLNLLGREGSIPRGMIMNFSNLEFLEL |
ProfileScan: PS51450 IPR001611
|
98-119 | LRR,Leucine-rich repeat profile. Leucine-rich repeat
|
NLKFLDLSSSKITKLPTSIREL |
Seg: seg | 160-168 | seg | EEFFEFEEF |
Seg: seg | 212-223 | seg | TLPTLSSSYLSL |
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