PRGDB00065585 (Afp.1087)
| Afp.1087 | |
|---|---|
| Gene Type | Putative_R-Genes,_predicted_from_NCBI_UniGene |
| GenBank | 71722001 (DR952638) |
| Gene Class | Unknown |
| Domain Type | LRR |
| Gene Species | Aquilegia formosa x Aquilegia pubescens |
DNA Sequence
GTTAGAGAACGTGGATGATGAGAGTGTGAAAATGCATGATGTGATTAGAGAATTAGCTTTATGGATCACTGGGAGAGATGAAGGTAAGGTTATTGTGAAGTCAGGTTACAACTTGAAAGAATTCCCCATAATTGATTTACATCCGACAGTGGTGGAAACAATATCCTTGATGAATACTGGAATCACTCATCTTGAAAAATTACCAAGCTGCCGAAACCTTTCAAACTTCTTTGCTCCCTATAATAATGATTTAAACCATATAAATGACGACTTTTTCCTTTCTATGCCCAATCTTAAGTTCTTAGATCTATCATCCAGTAAAATCACAAAACTACCCACAAGCATTCGTGAATTGTCTGAGTTGAAAGTCCTTAATTTGCTTGGAAGAGAGGGTTCAATTCCACGGGGAATGATAATGAATTTTTCGAATTTGGAGTTCTTGGAGTTGGATGTTTTAAAATCTGATGATTCTTCAGAGGAATTTTTCGAATTTGAAGAATTCAGATGCTTGAAAAAATTGAAATATCTGGGAATCTTTATTTCAGATTTCAAAGATCTTGAGAGGTTACTAAGCAACCCCCACTTGTGTAATTGTCTAAGGACTTTGGGTATTAAAAATTGCAAAGAGATTACCTTACCCACACTTTCATCATCGTATTTATCTCTTGGACGTCTTCAAAAACTGCAAGTTCTTCAAATTCTTAACTGTTCAGAGATCAAAGAGTGGATATTTGATTGCATCACAAATGATGATGAGCCAGAGATTGGGTTATTTGAAAGCTTGGAGACAATGGTCCTCGTCGATCTCCCCGAATTAATTATCTCATGGGATGCAAGGAATCTCCATTGTACACATTTCAGAAAACTCCATTACTAATATCTTTCATTGGTGTCACGCAATGGTGAATCTTACAT
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| Afp.1087 | translated coding region predicted by ESTScan from UniGene Afp.1087 | XLENVDDESVKMHDVIRELALWITGRDEGKVIVKSGYNLKEFPIIDLHPTVVETISLMNTGITHLEKLPSCRNLSNFFAPYNNDLNHINDDFFLSMPNLKFLDLSSSKITKLPTSIRELSELKVLNLLGREGSIPRGMIMNFSNLEFLELDVLKSDDSSEEFFEFEEFRCLKKLKYLGIFISDFKDLERLLSNPHLCNCLRTLGIKNCKEITLPTLSSSYLSLGRLQKLQVLQILNCSEIKEWIFDCITNDDEPEIGLFESLETMVLVDLPELIISWDARNLHCTHFRKLHY |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| superfamily: SSF52058 | 11-292 | L domain-like,LRR | KMHDVIRELALWITGRDEGKVIVKSGYNLKEFPIIDLHPTVVETISLMNTGITHLEKLPSCRNLSNFFAPYNNDLNHINDDFFLSMPNLKFLDLSSSKITKLPTSIRELSELKVLNLLGREGSIPRGMIMNFSNLEFLELDVLKSDDSSEEFFEFEEFRCLKKLKYLGIFISDFKDLERLLSNPHLCNCLRTLGIKNCKEITLPTLSSSYLSLGRLQKLQVLQILNCSEIKEWIFDCITNDDEPEIGLFESLETMVLVDLPELIISWDARNLHCTHFRKLHY |
| Gene3D: G3DSA:3.80.10.10 | 52-249 | no description | VETISLMNTGITHLEKLPSCRNLSNFFAPYNNDLNHINDDFFLSMPNLKFLDLSSSKITKLPTSIRELSELKVLNLLGREGSIPRGMIMNFSNLEFLELDVLKSDDSSEEFFEFEEFRCLKKLKYLGIFISDFKDLERLLSNPHLCNCLRTLGIKNCKEITLPTLSSSYLSLGRLQKLQVLQILNCSEIKEWIFDCIT |
| HMMPfam: PF13855 | 97-150 | LRR_8,Leucine rich repeat | PNLKFLDLSSSKITKLPTSIRELSELKVLNLLGREGSIPRGMIMNFSNLEFLEL |
| ProfileScan: PS51450 IPR001611
|
98-119 | LRR,Leucine-rich repeat profile. Leucine-rich repeat
|
NLKFLDLSSSKITKLPTSIREL |
| Seg: seg | 160-168 | seg | EEFFEFEEF |
| Seg: seg | 212-223 | seg | TLPTLSSSYLSL |
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