PRGDB00065587 (Afp.1213)

From PRG Wiki
Jump to: navigation, search
Afp.1213
Gene Type Putative_R-Genes,_predicted_from_NCBI_UniGene
GenBank 75454498 (DT764766)
Gene Class Unknown
Domain Type Ser-Thr Kinase
Gene Species Aquilegia formosa x Aquilegia pubescens

Comment?

EST1198615 Aquilegia cDNA library Aquilegia formosa x Aquilegia pubescens cDNA clone CO1Z457, mRNA sequence

DNA Sequence

ACAGGACTGACATCACATACATAAAGCTACaaaaaagggaaaaaaaaattatcgagaaaaaaaaaaaGAGGAATAAATATTTTCTTCTTTACTTCAAATTATATTAATGTTATCTCGGTCCAGACAATTCAACGGCATGGAGGTTGTCAGTGGAATCAACAATCCATTCTGAATTCCGGTGAGGAGCAAGATCGACCTCCTGGCGAATCACCTCCACCTTTTGCCACTCTTCCCATCTCTCTGCTAACCCATCACCTTCAAGCATTCTCACCACTTCTGACATCTTGGGTCGTTCCATTGGGGAGCTCTGGGTACATAATAGTGCAACCTGAATCAGTTGCTCCACTTCAGCATCAATATAGTTGCTTTGAAGATCAGGGTCCACCAGCATCTCCAACTTCTTCTCTTTCAGAAGTCCTTTCACCCAGTCAAGTAACATAACATCGTCATCGTTAGCAAGCCTGGCAAGATCAAAAGCTCTCTGACCAGTTATAAGCTCAAGAAGCATGATTCCATAACCAAAAACATCCGTCTTTTCTGAAGACTTCCCCGTAGAAAGGTACTCCGGTGCTATATGCCCAATTGTACCTCGCACTGCAGTTGTCACATGGGTGTCCTTGTAGTCCATAAGCTTAGCCAACCCAAAGTCTCCAACAACCGCCTCAAATTCCTCATCCAACAAAATATTAGCAGCCTTCACATCACGATGAATAATTTTTGGATCACAATGATCATGCAAATAAGAAAGCCCTCTTGCAGATCCCAATGCGATACGCTTGCGGGTTGGCCAATCAAGTGGAGGTTCTGATGGTTGACGTTCTCGTAAACATGATGCTACACTTCCATTGGCCATGTAGGGATATACAAGCAACCGTTCGGTTGGAGTCATGC


Protein sequences

Name Description Sequence
Afp.1213 translated coding region predicted by ESTScan from UniGene Afp.1213

XMTPTERLLVYPYMANGSVASCLRERQPSEPPLDWPTRKRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEMLVDPDLQSNYIDAEVEQLIQVALLCTQSSPMERPKMSEVVRMLEGDGLAERWEEWQKVEVIRQEVDLAPHRNSEWIVDSTDNLHAVELSGPR

Domains

Domain Start-End Description Sequence

ProfileScan: PS50011
IPR000719
1-224 PROTEIN_KINASE_DOM
Protein kinase, catalytic domain

XMTPTERLLVYPYMANGSVASCLRERQPSEPPLDWPTRKRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEMLVDPDLQSNYIDAEVEQLIQVALLCTQSSPMERPKMSEVVRMLEGDGLAERWEEWQ

HMMSmart: SM00219
IPR020635
1-211 Tyrosine kinase, catalytic domain
Tyrosine-protein kinase, catalytic domain

XMTPTERLLVYPYMANGSVASCLRERQPSEPPLDWPTRKRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEMLVDPDLQSNYIDAEVEQLIQVALLCTQSSPMERPKMSEVVRML

HMMPanther: PTHR24420:SF351
2-251 SUBFAMILY NOT NAMED,SUBFAMILY NOT NAMED

MTPTERLLVYPYMANGSVASCLRERQPSEPPLDWPTRKRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEMLVDPDLQSNYIDAEVEQLIQVALLCTQSSPMERPKMSEVVRMLEGDGLAERWEEWQKVEVIRQEVDLAPHRNSEWIVDSTDNL

HMMPanther: PTHR24420
2-251 FAMILY NOT NAMED,FAMILY NOT NAMED

MTPTERLLVYPYMANGSVASCLRERQPSEPPLDWPTRKRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEMLVDPDLQSNYIDAEVEQLIQVALLCTQSSPMERPKMSEVVRMLEGDGLAERWEEWQKVEVIRQEVDLAPHRNSEWIVDSTDNL

superfamily: SSF56112
IPR011009
2-219 Protein kinase-like (PK-like)
Protein kinase-like domain

MTPTERLLVYPYMANGSVASCLRERQPSEPPLDWPTRKRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEMLVDPDLQSNYIDAEVEQLIQVALLCTQSSPMERPKMSEVVRMLEGDGLAER

HMMSmart: SM00220
IPR002290
2-211 Serine/Threonine protein kinases, catalytic
Serine/threonine- / dual-specificity protein kinas

MTPTERLLVYPYMANGSVASCLRERQPSEPPLDWPTRKRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEMLVDPDLQSNYIDAEVEQLIQVALLCTQSSPMERPKMSEVVRML

HMMPfam: PF00069
IPR017442
4-208 Pkinase,Ser-thr
Serine/threonine-protein kinase-like domain

PTERLLVYPYMANGSVASCLRERQPSEPPLDWPTRKRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEMLVDPDLQSNYIDAEVEQLIQVALLCTQSSPMERPKMSEVV

Gene3D: G3DSA:1.10.510.10
15-211 no description

ANGSVASCLRERQPSEPPLDWPTRKRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEMLVDPDLQSNYIDAEVEQLIQVALLCTQSSPMERPKMSEVVRML

PatternScan: PS00108
IPR008271
60-72 PROTEIN_KINASE_ST
Serine/threonine-protein kinase, active site

IIHRDVKAANILL

Seg: seg
158-169 seg

KGLLKEKKLEML






List of Contributions

There has not been any contribution yet.


Analyses

Blast

Blast matches against Reference R-Genes. Show


Personal tools
Namespaces

Variants
Actions
PRGDB
META-SPECIES
Wiki
Toolbox