PRGDB00065588 (Afp.1236)
| Afp.1236 | |
|---|---|
| Gene Type | Putative_R-Genes,_predicted_from_NCBI_UniGene |
| GenBank | 71710865 (DR941502) |
| Gene Class | Unknown |
| Domain Type | LRR |
| Gene Species | Aquilegia formosa x Aquilegia pubescens |
DNA Sequence
CTCAAACTCTCTTCCAATCAATTCATAGGGCCTCTTCCTCAAGACCTCTTCAAGAGCTCCAACCTCTTGTTGCTTTCTGTCAACAACAATTCACTCAATGGTACCCTCCCTTCTGCAATTGGAGATCTTGCCTCCCTCAATGTCCTGAACCTAGGCAGAAACAGATTCACTGGACCTATCCCTCCGACGATTGGGAAGTTGAGCAAGCTATATGAGCTTCATCTTTCACACAACAGCTTCAACGGTGAAATCCCCTTCGAGCTTGGACAACTCCAGAATCTGCAGAGTACGTTGGACCTTAGCTACAACAATCTCACAGGCAAAATCCCACCTCTTGGGATGCTGTCCAAACTTGAAGTACTTGATCTATCTCACAATGAGCTCACTGGAGAAGTACCTTCGCAAGTTGGTGAGATGAGCAGCTTGAGCAAGCTTGATCTCTCTTACAACAATCTTCAAGGCCAACTTGATAAACAACTCTCGCAGTGGCCACCCAACACCTTTGCAGGGAACTCTAGACTTTGTGGAGGTCCTCTTCGTGCATGTGCAAAATCAGAGTCTGATGATATCCATGATAATAAAAAAGCATCTTCAACAGTAGTGATTATGGCCACTTCAACTGTAGCAGCCATTGTTCTATTACTGATTGGGCTTGTACTACTCAACCGGAGACACCAATCCCTGAGAAGAGCCAGTGAAGTGAACTGTGGATATTCATCTAGTTCTTCTCAAACACATCGGCGTTTACTATTCCAAGGTGGTGCCACAAGGAAAGAATTTAAATGGGAAGATATCATGGAAGCAACCAACACCTGAGCGACATTATGTGATTGGGTCACGGGGGTCTGGGATGGTTTATATGCAGAGCTACCACTGGAGAGACAGTTGCAGTCAGAGATACTAAGAA
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| Afp.1236 | translated coding region predicted by ESTScan from UniGene Afp.1236 | LKLSSNQFIGPLPQDLFKSSNLLLLSVNNNSLNGTLPSAIGDLASLNVLNLGRNRFTGPIPPTIGKLSKLYELHLSHNSFNGEIPFELGQLQNLQSTLDLSYNNLTGKIPPLGMLSKLEVLDLSHNELTGEVPSQVGEMSSLSKLDLSYNNLQGQLDKQLSQWPPNTFAGNSRLCGGPLRACAKSESDDIHDNKKASSTVVIMATSTVAAIVLLLIGLVLLNRRHQSLRRASEVNCGYSSSSSQTHRRLLFQGGATRKEFKWEDIMEATNTXATLCDWVTGVWDGLYAELPLERQLQSEILRX |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| superfamily: SSF52058 | 1-183 | L domain-like,LRR | LKLSSNQFIGPLPQDLFKSSNLLLLSVNNNSLNGTLPSAIGDLASLNVLNLGRNRFTGPIPPTIGKLSKLYELHLSHNSFNGEIPFELGQLQNLQSTLDLSYNNLTGKIPPLGMLSKLEVLDLSHNELTGEVPSQVGEMSSLSKLDLSYNNLQGQLDKQLSQWPPNTFAGNSRLCGGPLRACA |
| HMMPanther: PTHR24420:SF864 | 1-269 | SUBFAMILY NOT NAMED | LKLSSNQFIGPLPQDLFKSSNLLLLSVNNNSLNGTLPSAIGDLASLNVLNLGRNRFTGPIPPTIGKLSKLYELHLSHNSFNGEIPFELGQLQNLQSTLDLSYNNLTGKIPPLGMLSKLEVLDLSHNELTGEVPSQVGEMSSLSKLDLSYNNLQGQLDKQLSQWPPNTFAGNSRLCGGPLRACAKSESDDIHDNKKASSTVVIMATSTVAAIVLLLIGLVLLNRRHQSLRRASEVNCGYSSSSSQTHRRLLFQGGATRKEFKWEDIMEAT |
| HMMPanther: PTHR24420 | 1-269 | FAMILY NOT NAMED,FAMILY NOT NAMED | LKLSSNQFIGPLPQDLFKSSNLLLLSVNNNSLNGTLPSAIGDLASLNVLNLGRNRFTGPIPPTIGKLSKLYELHLSHNSFNGEIPFELGQLQNLQSTLDLSYNNLTGKIPPLGMLSKLEVLDLSHNELTGEVPSQVGEMSSLSKLDLSYNNLQGQLDKQLSQWPPNTFAGNSRLCGGPLRACAKSESDDIHDNKKASSTVVIMATSTVAAIVLLLIGLVLLNRRHQSLRRASEVNCGYSSSSSQTHRRLLFQGGATRKEFKWEDIMEAT |
| Gene3D: G3DSA:3.80.10.10 | 1-163 | no description | LKLSSNQFIGPLPQDLFKSSNLLLLSVNNNSLNGTLPSAIGDLASLNVLNLGRNRFTGPIPPTIGKLSKLYELHLSHNSFNGEIPFELGQLQNLQSTLDLSYNNLTGKIPPLGMLSKLEVLDLSHNELTGEVPSQVGEMSSLSKLDLSYNNLQGQLDKQLSQW |
| Seg: seg | 19-33 | seg | SSNLLLLSVNNNSLN |
| HMMSmart: SM00369 IPR003591
|
43-66 | Leucine-rich repeats, typical (most populate Leucine-rich repeat, typical subtype
|
LASLNVLNLGRNRFTGPIPPTIGK |
| ProfileScan: PS51450 IPR001611
|
45-67 | LRR,Leucine-rich repeat profile. Leucine-rich repeat
|
SLNVLNLGRNRFTGPIPPTIGKL |
| HMMPfam: PF12799 | 45-80 | LRR_4,Leucine Rich repeats (2 copies) | SLNVLNLGRNRFTGPIPPTIGKLSKLYELHLSHNSF |
| HMMSmart: SM00369 IPR003591
|
67-91 | Leucine-rich repeats, typical (most populate Leucine-rich repeat, typical subtype
|
LSKLYELHLSHNSFNGEIPFELGQL |
| ProfileScan: PS51450 IPR001611
|
69-92 | LRR,Leucine-rich repeat profile. Leucine-rich repeat
|
KLYELHLSHNSFNGEIPFELGQLQ |
| ProfileScan: PS51450 IPR001611
|
93-116 | LRR,Leucine-rich repeat profile. Leucine-rich repeat
|
NLQSTLDLSYNNLTGKIPPLGMLS |
| HMMPfam: PF13855 | 97-152 | LRR_8,Leucine rich repeat | TLDLSYNNLTGKIPPLGMLSKLEVLDLSHNELTGEVPSQVGEMSSLSKLDLSYNNL |
| HMMSmart: SM00369 IPR003591
|
115-137 | Leucine-rich repeats, typical (most populate Leucine-rich repeat, typical subtype
|
LSKLEVLDLSHNELTGEVPSQVG |
| ProfileScan: PS51450 IPR001611
|
117-139 | LRR,Leucine-rich repeat profile. Leucine-rich repeat
|
KLEVLDLSHNELTGEVPSQVGEM |
| FPrintScan: PR00019 | 118-131 | LEURICHRPT,Leucine-rich repeat signature | LEVLDLSHNELTGE |
| FPrintScan: PR00019 | 139-152 | LEURICHRPT,Leucine-rich repeat signature | MSSLSKLDLSYNNL |
| HMMSmart: SM00369 IPR003591
|
139-170 | Leucine-rich repeats, typical (most populate Leucine-rich repeat, typical subtype
|
MSSLSKLDLSYNNLQGQLDKQLSQWPPNTFAG |
| ProfileScan: PS51450 IPR001611
|
141-162 | LRR,Leucine-rich repeat profile. Leucine-rich repeat
|
SLSKLDLSYNNLQGQLDKQLSQ |
| Seg: seg | 208-221 | seg | VAAIVLLLIGLVLL |
List of Contributions
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