PRGDB00065911 (At.8850)
| At.8850 | |
|---|---|
| Gene Type | Putative_R-Genes,_predicted_from_NCBI_UniGene |
| GenBank | 145358106 (NM_121665) |
| Gene Class | RLP |
| Domain Type | Ser-Thr Kinase, LRR |
| Gene Species | Arabidopsis thaliana |
DNA Sequence
ATAGCCGTCGAGACAGATAGAGAGAGCTGAAATTTCTGTGAGAAGATTTTCTTCCGACATTTTCTCTTTCCAAACACTGTTCTACACGTAGTCGGAAATCTCGGAAAAACCAATCTCCGAGTCagagagagagagagagGCGTTCACTGTTGTAAAGGATTAAGCTTTGGGTAAGAAGAAGATGAAGAACAAGACCAATTTAGGTCTCTCAGTCTTCTTCTTCTTTATATGTCTCGTTTCCGTGACATCAGATCTAGAAGCTGATCGACGAGCTCTAATCGCACTTCGTGACGGTGTTCATGGGCGTCCATTGCTGTGGAATCTAACAGCACCACCGTGTACTTGGGGAGGAGTCCAATGTGAGTCGGGTCGTGTCACAGCACTCCGATTACCCGGTGTGGGTTTATCGGGTCCATTACCAATCGCCATCGGAAACCTTACAAAGCTCGAAACTTTATCATTCCGATTCAATGCTCTTAACGGTCCTCTCCCGCCGGATTTCGCAAACCTAACTCTTCTCCGTTACTTGTATCTTCAAGGAAACGCATTTTCCGGCGAGATTCCTTCGTTTCTCTTCACTCTACCAAACATTATTCGGATCAATCTCGCCCAGAATAATTTCTTGGGTCGGATCCCGGATAATGTCAATTCTGCAACCCGGTTAGCTACTCTTTACTTGCAGGATAATCAACTCACCGGTCCAATCCCGGAGATTAAGATTAAGCTTCAACAGTTTAATGTCTCATCCAATCAGTTAAACGGGTCGATTCCGGATCCGTTGTCGGGTATGCCCAAAACCGCCTTTTTAGGCAATTTGCTCTGTGGGAAGCCGTTAGATGCTTGCCCTGTCAATGGCACTGGAAACGGTACTGTGACGCCTGGAGGAAAAGGGAAAAGCGACAAGTTATCTGCCGGAGCTATTGTCGGAATAGTGATCGGCTGTTTCGTCTTGCTTCTCGTGCTTTTCTTGATCGTGTTCTGTCTCTGTAGAAAGAAGAAGAAAGAGCAAGTCGTCCAATCGAGAAGCATCGAAGCAGCTCCTGTTCCGACCTCATCAGCAGCCGTGGCTAAGGAATCGAATGGTCCTCCTGCGGTGGTGGCTAATGGTGCATCTGAAAATGGTGTATCAAAGAACCCTGCTGCAGTGAGTAAAGATCTGACATTTTTCGTGAAATCTTTCGGCGAGTTTGATCTTGATGGATTGCTGAAAGCTTCTGCGGAAGTACTTGGTAAAGGAACGTTCGGATCTTCGTACAAGGCCAGTTTCGATCACGGATTAGTGGTGGCTGTGAAACGATTGAGAGATGTCGTGGTTCCTGAGAAAGAGTTCAGAGAGAAATTGCAGGTTCTTGGATCCATAAGCCATGCCAATCTTGTGACATTGATTGCATATTACTTCAGCCGCGACGAAAAGCTCGTTGTTTTCGAATACATGTCTAGAGGAAGCTTGTCTGCGCTGTTACACGGGAACAAAGGAAGTGGCAGAAGTCCATTGAATTGGGAAACGAGAGCCAATATAGCATTAGGAGCCGCAAGAGCAATTAGCTACCTCCATTCGCGTGACGCGACAACATCTCATGGCAACATTAAATCATCTAACATTCTATTGTCAGAATCCTTTGAAGCTAAGGTCTCTGACTACTGTCTTGCACCTATGATCAGCCCTACTTCTACACCTAACCGCATTGATGGTTACCGAGCTCCTGAAGTAACCGATGCTCGTAAAATCTCCCAAAAGGCTGATGTTTACAGCTTCGGTGTTCTCATTCTTGAATTACTCACAGGGAAATCTCCAACGCATCAGCAGTTACACGAAGAAGGAGTAGATTTACCGAGATGGGTTTCATCGATCACTGAACAACAATCACCATCAGATGTGTTTGATCCAGAGCTCACAAGGTATCAATCGGACAGCAATGAGAACATGATCAGGCTTTTAAACATCGGTATAAGTTGTACGACTCAGTATCCAGATAGTCGTCCTACAATGCCTGAAGTCACAAGACTCATCGAGGAGGTTTCTCGTTCACCTGCTTCACCAGGTCCTTTGTCCGATTGATTGTATTTTTCTTTTTCAATATATGGGGTCTAAATTGATCATTTCAAAATTGTTTGGTCTAAATTTGAATTTCTTTATATAGTTTGGTCTTTAAGTCAGTTGAGAGATCTACGTTGAAGtttttttttttttttttgtgtttcttaatttttttagtgaaattttttATATACAAATTGATTGAGTGTGAAACAAATTATATCTCTCCTTTTC
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| At.8850 | translated coding region predicted by ESTScan from UniGene At.8850 | MKNKTNLGLSVFFFFICLVSVTSDLEADRRALIALRDGVHGRPLLWNLTAPPCTWGGVQCESGRVTALRLPGVGLSGPLPIAIGNLTKLETLSFRFNALNGPLPPDFANLTLLRYLYLQGNAFSGEIPSFLFTLPNIIRINLAQNNFLGRIPDNVNSATRLATLYLQDNQLTGPIPEIKIKLQQFNVSSNQLNGSIPDPLSGMPKTAFLGNLLCGKPLDACPVNGTGNGTVTPGGKGKSDKLSAGAIVGIVIGCFVLLLVLFLIVFCLCRKKKKEQVVQSRSIEAAPVPTSSAAVAKESNGPPAVVANGASENGVSKNPAAVSKDLTFFVKSFGEFDLDGLLKASAEVLGKGTFGSSYKASFDHGLVVAVKRLRDVVVPEKEFREKLQVLGSISHANLVTLIAYYFSRDEKLVVFEYMSRGSLSALLHGNKGSGRSPLNWETRANIALGAARAISYLHSRDATTSHGNIKSSNILLSESFEAKVSDYCLAPMISPTSTPNRIDGYRAPEVTDARKISQKADVYSFGVLILELLTGKSPTHQQLHEEGVDLPRWVSSITEQQSPSDVFDPELTRYQSDSNENMIRLLNIGISCTTQYPDSRPTMPEVTRLIEEVSRSPASPGPLSD |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| HMMPanther: PTHR24420:SF544 | 1-622 | LEUCINE-RICH REPEAT TRANSMEMBRANE PROTEIN KINASE, PUTATIVE | MKNKTNLGLSVFFFFICLVSVTSDLEADRRALIALRDGVHGRPLLWNLTAPPCTWGGVQCESGRVTALRLPGVGLSGPLPIAIGNLTKLETLSFRFNALNGPLPPDFANLTLLRYLYLQGNAFSGEIPSFLFTLPNIIRINLAQNNFLGRIPDNVNSATRLATLYLQDNQLTGPIPEIKIKLQQFNVSSNQLNGSIPDPLSGMPKTAFLGNLLCGKPLDACPVNGTGNGTVTPGGKGKSDKLSAGAIVGIVIGCFVLLLVLFLIVFCLCRKKKKEQVVQSRSIEAAPVPTSSAAVAKESNGPPAVVANGASENGVSKNPAAVSKDLTFFVKSFGEFDLDGLLKASAEVLGKGTFGSSYKASFDHGLVVAVKRLRDVVVPEKEFREKLQVLGSISHANLVTLIAYYFSRDEKLVVFEYMSRGSLSALLHGNKGSGRSPLNWETRANIALGAARAISYLHSRDATTSHGNIKSSNILLSESFEAKVSDYCLAPMISPTSTPNRIDGYRAPEVTDARKISQKADVYSFGVLILELLTGKSPTHQQLHEEGVDLPRWVSSITEQQSPSDVFDPELTRYQSDSNENMIRLLNIGISCTTQYPDSRPTMPEVTRLIEEVSRSPASPGP |
| HMMPanther: PTHR24420 | 1-622 | FAMILY NOT NAMED,FAMILY NOT NAMED | MKNKTNLGLSVFFFFICLVSVTSDLEADRRALIALRDGVHGRPLLWNLTAPPCTWGGVQCESGRVTALRLPGVGLSGPLPIAIGNLTKLETLSFRFNALNGPLPPDFANLTLLRYLYLQGNAFSGEIPSFLFTLPNIIRINLAQNNFLGRIPDNVNSATRLATLYLQDNQLTGPIPEIKIKLQQFNVSSNQLNGSIPDPLSGMPKTAFLGNLLCGKPLDACPVNGTGNGTVTPGGKGKSDKLSAGAIVGIVIGCFVLLLVLFLIVFCLCRKKKKEQVVQSRSIEAAPVPTSSAAVAKESNGPPAVVANGASENGVSKNPAAVSKDLTFFVKSFGEFDLDGLLKASAEVLGKGTFGSSYKASFDHGLVVAVKRLRDVVVPEKEFREKLQVLGSISHANLVTLIAYYFSRDEKLVVFEYMSRGSLSALLHGNKGSGRSPLNWETRANIALGAARAISYLHSRDATTSHGNIKSSNILLSESFEAKVSDYCLAPMISPTSTPNRIDGYRAPEVTDARKISQKADVYSFGVLILELLTGKSPTHQQLHEEGVDLPRWVSSITEQQSPSDVFDPELTRYQSDSNENMIRLLNIGISCTTQYPDSRPTMPEVTRLIEEVSRSPASPGP |
| superfamily: SSF52058 | 18-209 | L domain-like,LRR | LVSVTSDLEADRRALIALRDGVHGRPLLWNLTAPPCTWGGVQCESGRVTALRLPGVGLSGPLPIAIGNLTKLETLSFRFNALNGPLPPDFANLTLLRYLYLQGNAFSGEIPSFLFTLPNIIRINLAQNNFLGRIPDNVNSATRLATLYLQDNQLTGPIPEIKIKLQQFNVSSNQLNGSIPDPLSGMPKTAFL |
| HMMPfam: PF08263 IPR013210
|
26-60 | LRRNT_2 Leucine-rich repeat-containing N-terminal domain,
|
EADRRALIALRDGVHGRPLLWNLTAPPCTWGGVQC |
| Gene3D: G3DSA:3.80.10.10 | 43-208 | no description | PLLWNLTAPPCTWGGVQCESGRVTALRLPGVGLSGPLPIAIGNLTKLETLSFRFNALNGPLPPDFANLTLLRYLYLQGNAFSGEIPSFLFTLPNIIRINLAQNNFLGRIPDNVNSATRLATLYLQDNQLTGPIPEIKIKLQQFNVSSNQLNGSIPDPLSGMPKTAF |
| HMMPfam: PF12799 | 87-124 | LRR_4,Leucine Rich repeats (2 copies) | TKLETLSFRFNALNGPLPPDFANLTLLRYLYLQGNAFS |
| Seg: seg | 222-238 | seg | PVNGTGNGTVTPGGKGK |
| Seg: seg | 247-269 | seg | IVGIVIGCFVLLLVLFLIVFCLC |
| Seg: seg | 285-296 | seg | AAPVPTSSAAVA |
| superfamily: SSF56112 IPR011009
|
313-624 | Protein kinase-like (PK-like) Protein kinase-like domain
|
NGVSKNPAAVSKDLTFFVKSFGEFDLDGLLKASAEVLGKGTFGSSYKASFDHGLVVAVKRLRDVVVPEKEFREKLQVLGSISHANLVTLIAYYFSRDEKLVVFEYMSRGSLSALLHGNKGSGRSPLNWETRANIALGAARAISYLHSRDATTSHGNIKSSNILLSESFEAKVSDYCLAPMISPTSTPNRIDGYRAPEVTDARKISQKADVYSFGVLILELLTGKSPTHQQLHEEGVDLPRWVSSITEQQSPSDVFDPELTRYQSDSNENMIRLLNIGISCTTQYPDSRPTMPEVTRLIEEVSRSPASPGPLS |
| HMMSmart: SM00219 IPR020635
|
342-610 | Tyrosine kinase, catalytic domain Tyrosine-protein kinase, catalytic domain
|
LKASAEVLGKGTFGSSYKASFDHGLVVAVKRLRDVVVPEKEFREKLQVLGSISHANLVTLIAYYFSRDEKLVVFEYMSRGSLSALLHGNKGSGRSPLNWETRANIALGAARAISYLHSRDATTSHGNIKSSNILLSESFEAKVSDYCLAPMISPTSTPNRIDGYRAPEVTDARKISQKADVYSFGVLILELLTGKSPTHQQLHEEGVDLPRWVSSITEQQSPSDVFDPELTRYQSDSNENMIRLLNIGISCTTQYPDSRPTMPEVTRLI |
| ProfileScan: PS50011 IPR000719
|
343-613 | PROTEIN_KINASE_DOM Protein kinase, catalytic domain
|
KASAEVLGKGTFGSSYKASFDHGLVVAVKRLRDVVVPEKEFREKLQVLGSISHANLVTLIAYYFSRDEKLVVFEYMSRGSLSALLHGNKGSGRSPLNWETRANIALGAARAISYLHSRDATTSHGNIKSSNILLSESFEAKVSDYCLAPMISPTSTPNRIDGYRAPEVTDARKISQKADVYSFGVLILELLTGKSPTHQQLHEEGVDLPRWVSSITEQQSPSDVFDPELTRYQSDSNENMIRLLNIGISCTTQYPDSRPTMPEVTRLIEEV |
| HMMSmart: SM00220 IPR002290
|
343-610 | Serine/Threonine protein kinases, catalytic Serine/threonine- / dual-specificity protein kinas
|
KASAEVLGKGTFGSSYKASFDHGLVVAVKRLRDVVVPEKEFREKLQVLGSISHANLVTLIAYYFSRDEKLVVFEYMSRGSLSALLHGNKGSGRSPLNWETRANIALGAARAISYLHSRDATTSHGNIKSSNILLSESFEAKVSDYCLAPMISPTSTPNRIDGYRAPEVTDARKISQKADVYSFGVLILELLTGKSPTHQQLHEEGVDLPRWVSSITEQQSPSDVFDPELTRYQSDSNENMIRLLNIGISCTTQYPDSRPTMPEVTRLI |
| Gene3D: G3DSA:3.30.200.20 | 346-403 | no description | AEVLGKGTFGSSYKASFDHGLVVAVKRLRDVVVPEKEFREKLQVLGSISHANLVTLIA |
| HMMPfam: PF00069 IPR017442
|
347-607 | Pkinase,Ser-thr Serine/threonine-protein kinase-like domain
|
EVLGKGTFGSSYKASFDHGLVVAVKRLRDVVVPEKEFREKLQVLGSISHANLVTLIAYYFSRDEKLVVFEYMSRGSLSALLHGNKGSGRSPLNWETRANIALGAARAISYLHSRDATTSHGNIKSSNILLSESFEAKVSDYCLAPMISPTSTPNRIDGYRAPEVTDARKISQKADVYSFGVLILELLTGKSPTHQQLHEEGVDLPRWVSSITEQQSPSDVFDPELTRYQSDSNENMIRLLNIGISCTTQYPDSRPTMPEVT |
| Seg: seg | 366-378 | seg | LVVAVKRLRDVVV |
| Gene3D: G3DSA:1.10.510.10 | 404-606 | no description | YYFSRDEKLVVFEYMSRGSLSALLHGNKGSGRSPLNWETRANIALGAARAISYLHSRDATTSHGNIKSSNILLSESFEAKVSDYCLAPMISPTSTPNRIDGYRAPEVTDARKISQKADVYSFGVLILELLTGKSPTHQQLHEEGVDLPRWVSSITEQQSPSDVFDPELTRYQSDSNENMIRLLNIGISCTTQYPDSRPTMPEV |
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