PRGDB00065920 (At.10625)
| At.10625 | |
|---|---|
| Gene Type | Putative_R-Genes,_predicted_from_NCBI_UniGene |
| GenBank | 13809917 (AY026364) |
| Gene Class | Unknown |
| Domain Type | LRR |
| Gene Species | Arabidopsis thaliana |
DNA Sequence
ATAATTAGTAAAATTGGGTTTCTTGACCCATAAGCAATGTTgttccctcctcttcgttccctctttctcttcaccctcttgctctcctccGTTTGTTTCTTACAAATCAAAGCAGACCACGACGATGAAAGCGACTTGGGCAGTGATATCAAAGTAGACAAACGTCTCAAGTTCGAGAACCCGAAGCTACGTCAAGCCTACATTGCTCTTCAATCATGGAAAAAAGCAATCTTTTCTGATCCTTTCAACTTCACAGCTAATTGGAATGGTTCAGATGTTTGCTCCTACAATGGAATCTATTGTGCTCCTTCTCCTTCATACCCGAAAACCCGAGTCGTTGCTGGCATTGACCTCAACCACGCTGACATGGCCGGTTACTTGGCTTCCGAGCTAGGTCTCCTCTCTGATCTCGCTCTGTTCCACATTAACTCAAACCGTTTCTGCGGTGAAGTCCCTCTCACGTTTAACCGCATGAAGCTTCTCTACGAGCTTGATCTTAGCAACAACCGATTCGTCGGTAAGTTCCCTAAGGTTGTCCTCTCTTTGCCTTCCCTTAAATTCTTGGATCTCCGCTACAACGAGTTTGAAGGCAAGATCCCATCAAAGCTCTTCGATAGAGAGCTTGACGCTATATTCTTGAACCATAACCGGTTCCGGTTCGGGATTCCCAAAAACATGGGAAATTCCCCTGTTTCTGCTCTGGTTCTTGCGGACAACAATCTCGGAGGATGCATACCGGGAAGTATCGGTCAAATGGGGAAAACACTCAACGAGCTTATCCTCTCCAACGACAACTTAACCGGTTGTTTACCTCCTCAGATCGGAAACCTCAAGAAAGTGACGGTTTTCGACATCACTTCAAACCGTCTACAAGGTCCGTTACCATCTAGCGTTGGTAACATGAAGAGCCTAGAAGAGCTTCACGTGGCTAACAATGCCTTCACAGGAGTTATTCCTCCAAGTATCTGCCAGCTTTCTAACCTTGAGAACTTTACTTACTCTTCCAACTACTTCTCCGGTCGTCCTCCTATATGCGCAGCTAGTTTGTTAGCCGACATTGTGGTGAACGGTACCATGAACTGCATCACCGGTTTGGCTCGTCAAAGATCGGATAAACAGTGCTCATCTTTGCTTGCTCGCCCTGTGGATTGCAGTAAGTTTGGATGTTACAACATCTTCTCTCCACCACCACCGACGTTTAAGATGTCACCTGAAGTCCGGACACTTCCTCCACCGATTTACGTGTACTCATCGCCTCCTCCACCACCGTCGTCAAAGATGTCCCCTACCGTCAGAGCATACTCTCCCCCACCACCACCTTCGTCCAAGATGTCACCCTCTGTCAGAGCATATTCACCACCACCGCCTCCTTATTCCAAGATGTCACCTAGCGTTCGAGCTTACCCTCCTCCACCACCACCATCACCATCTCCCCCACCGCCTTACGTATACTCATCTCCTCCACCGCCCTATGTGTACTCATCTCCTCCTCCACCGCCGTATGTGTATTCATCCCCTCCTCCACCGCCTTACGTATACTCATCTCCTCCACCGCCTTACGTGTACTCATCTCCACCCCCGCCTTACGTATACTCATCTCCACCTCCGCCTCCTCCAAGTCCACCACCACCGTGTCCTGAATCATCTCCACCACCGCCTGTTGTATACTACGCACCCGTGACACAAAGCCCTCCACCACCATCACCGGTATACTATCCACCAGTAACACAAAGCCCTCCACCACCATCGCCAGTATACTACCCACCGGTGACAAACAGTCCACCACCACCATCACCGGTATACTATCCCCCAGTAACATACAGTccaccaccaccatcaccagtttactatccccaagtaacaccaagtcctccaccaccaTCGCCGCTATACTATCCCCCAGTAACACCAAGTCCACCACCACCATCACCAGTTTACTATCCCCCAGTAACACCAAGTCCTCCACCACCATCACCAGTTTACTATCCCCCAGTAACACCAAGTCCTCCACCACCATCACCAGTTTACTATCCATCGGAAACACAAAGTCCTCCACCACCTACTGAGTACTACTATTCACCAAGCCAGTCTCCGCCACCAACAAAAGCATGTAAAGAAGGCCATCCACCACAAGCAACACCAAGTTACGAACCACCTCCAGAATATTCATACTCATCATCACCACCACCACCATCTCCTACGTCCTACTTTCCACCGATGCCAAGCGTCTCATATGATGCATctcctcctcctcctccGTCTTACTACTAGTTTCAACCATTGAGTAAAAAAATGCATTGCCTTATGATTAACGAGACTACTCACAATTATATTCTTTTGGCTGCGAGACTTTAATTTGTGTGTTTTGTTGATTTAAAGAAAAAAAGACATTCCAGTTACTTTTTCTTGTAATAtttttttttcttttGGATATTATGTTCTTT
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| At.10625 | translated coding region predicted by ESTScan from UniGene At.10625 | MLFPPLRSLFLFTLLLSSVCFLQIKADHDDESDLGSDIKVDKRLKFENPKLRQAYIALQSWKKAIFSDPFNFTANWNGSDVCSYNGIYCAPSPSYPKTRVVAGIDLNHADMAGYLASELGLLSDLALFHINSNRFCGEVPLTFNRMKLLYELDLSNNRFVGKFPKVVLSLPSLKFLDLRYNEFEGKIPSKLFDRELDAIFLNHNRFRFGIPKNMGNSPVSALVLADNNLGGCIPGSIGQMGKTLNELILSNDNLTGCLPPQIGNLKKVTVFDITSNRLQGPLPSSVGNMKSLEELHVANNAFTGVIPPSICQLSNLENFTYSSNYFSGRPPICAASLLADIVVNGTMNCITGLARQRSDKQCSSLLARPVDCSKFGCYNIFSPPPPTFKMSPEVRTLPPPIYVYSSPPPPPSSKMSPTVRAYSPPPPPSSKMSPSVRAYSPPPPPYSKMSPSVRAYPPPPPPSPSPPPPYVYSSPPPPYVYSSPPPPPYVYSSPPPPPYVYSSPPPPYVYSSPPPPYVYSSPPPPPPSPPPPCPESSPPPPVVYYAPVTQSPPPPSPVYYPPVTQSPPPPSPVYYPPVTNSPPPPSPVYYPPVTYSPPPPSPVYYPQVTPSPPPPSPLYYPPVTPSPPPPSPVYYPPVTPSPPPPSPVYYPPVTPSPPPPSPVYYPSETQSPPPPTEYYYSPSQSPPPTKACKEGHPPQATPSYEPPPEYSYSSSPPPPSPTSYFPPMPSVSYDASPPPPPSYY |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| superfamily: SSF52058 | 48-331 | SSF52058,LRR | NPKLRQAYIALQSWKKAIFSDPFNFTANWNGSDVCSYNGIYCAPSPSYPKTRVVAGIDLNHADMAGYLASELGLLSDLALFHINSNRFCGEVPLTFNRMKLLYELDLSNNRFVGKFPKVVLSLPSLKFLDLRYNEFEGKIPSKLFDRELDAIFLNHNRFRFGIPKNMGNSPVSALVLADNNLGGCIPGSIGQMGKTLNELILSNDNLTGCLPPQIGNLKKVTVFDITSNRLQGPLPSSVGNMKSLEELHVANNAFTGVIPPSICQLSNLENFTYSSNYFSGRPP |
| Gene3D: G3DSA:3.80.10.10 | 50-337 | G3DSA:3.80.10.10 | KLRQAYIALQSWKKAIFSDPFNFTANWNGSDVCSYNGIYCAPSPSYPKTRVVAGIDLNHADMAGYLASELGLLSDLALFHINSNRFCGEVPLTFNRMKLLYELDLSNNRFVGKFPKVVLSLPSLKFLDLRYNEFEGKIPSKLFDRELDAIFLNHNRFRFGIPKNMGNSPVSALVLADNNLGGCIPGSIGQMGKTLNELILSNDNLTGCLPPQIGNLKKVTVFDITSNRLQGPLPSSVGNMKSLEELHVANNAFTGVIPPSICQLSNLENFTYSSNYFSGRPPICAASL |
| HMMPanther: PTHR24420:SF665 | 55-450 | PTHR24420:SF665 | YIALQSWKKAIFSDPFNFTANWNGSDVCSYNGIYCAPSPSYPKTRVVAGIDLNHADMAGYLASELGLLSDLALFHINSNRFCGEVPLTFNRMKLLYELDLSNNRFVGKFPKVVLSLPSLKFLDLRYNEFEGKIPSKLFDRELDAIFLNHNRFRFGIPKNMGNSPVSALVLADNNLGGCIPGSIGQMGKTLNELILSNDNLTGCLPPQIGNLKKVTVFDITSNRLQGPLPSSVGNMKSLEELHVANNAFTGVIPPSICQLSNLENFTYSSNYFSGRPPICAASLLADIVVNGTMNCITGLARQRSDKQCSSLLARPVDCSKFGCYNIFSPPPPTFKMSPEVRTLPPPIYVYSSPPPPPSSKMSPTVRAYSPPPPPSSKMSPSVRAYSPPPPPYSKMS |
| HMMPanther: PTHR24420 | 55-450 | PTHR24420,FAMILY NOT NAMED | YIALQSWKKAIFSDPFNFTANWNGSDVCSYNGIYCAPSPSYPKTRVVAGIDLNHADMAGYLASELGLLSDLALFHINSNRFCGEVPLTFNRMKLLYELDLSNNRFVGKFPKVVLSLPSLKFLDLRYNEFEGKIPSKLFDRELDAIFLNHNRFRFGIPKNMGNSPVSALVLADNNLGGCIPGSIGQMGKTLNELILSNDNLTGCLPPQIGNLKKVTVFDITSNRLQGPLPSSVGNMKSLEELHVANNAFTGVIPPSICQLSNLENFTYSSNYFSGRPPICAASLLADIVVNGTMNCITGLARQRSDKQCSSLLARPVDCSKFGCYNIFSPPPPTFKMSPEVRTLPPPIYVYSSPPPPPSSKMSPTVRAYSPPPPPSSKMSPSVRAYSPPPPPYSKMS |
| HMMPfam: PF08263 IPR013210
|
57-89 | LRRNT_2 Leucine-rich repeat-containing N-terminal domain,
|
ALQSWKKAIFSDPFNFTANWNGSDVCSYNGIYC |
| HMMPfam: PF00560 IPR001611
|
172-192 | LRR_1 Leucine-rich repeat
|
SLKFLDLRYNEFEGKIPSKLF |
| FPrintScan: PR01217 | 383-395 | PRICHEXTENSN,Proline rich extensin signature | PPPPTFKMSPEVR |
| FPrintScan: PR01217 | 406-427 | PRICHEXTENSN,Proline rich extensin signature | SPPPPPSSKMSPTVRAYSPPPP |
| FPrintScan: PR01217 | 428-444 | PRICHEXTENSN,Proline rich extensin signature | PSSKMSPSVRAYSPPPP |
| FPrintScan: PR01217 | 457-482 | PRICHEXTENSN,Proline rich extensin signature | PPPPPPSPSPPPPYVYSSPPPPYVYS |
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