PRGDB00065999 (At.19832)

From PRG Wiki
Jump to: navigation, search
At.19832
Gene Type Putative_R-Genes,_predicted_from_NCBI_UniGene
GenBank 23397231 (BT000758)
Gene Class Unknown
Domain Type
Gene Species Arabidopsis thaliana

Comment?

Arabidopsis thaliana clone RAFL06-70-E01 (R11539) putative glycoprotein (EP1) (At1g78850) mRNA, complete cds

DNA Sequence

GACCAAAATCCATTAACACACACAAAAACAAAATGAAATTTTCAATCACATTAGCTCTATGCTTCACTCTCTCCATCTTCTTGATCGGATCACAAGCCAAAGTTCCAGTCGACGACCAATTCCGAGTGGTCAACGAAGGTGGCTACACCGATTACAGTCCCATCGAATACAACCCCGACGTACGTGGCTTCGTACCCTTCAGTGACAACTTCCGTCTCTGTTTCTACAACACAACCCCAAACGCATACACTCTCGCTCTCAGAATCGGAAACAGAGTCCAAGAATCCACTCTCAGATGGGTCTGGGAAGCAAACAGAGGCTCACCGGTCAAAGAAAACGCGACGTTGACTTTTGGCGAAGACGGAAACCTCGTACTCGCTGAAGCCGATGGACGCTTGGTATGGCAAACGAACACAGCTAACAAAGGCGCCGTGGGGATCAAAATCTTGGAGAATGGCAATATGGTAATATACGATTCCAGTGGAAAATTTGTATGGCAGAGCTTTGATTCTCCCACCGACACACTTCTCGTTGGACAGTCTTTGAAACTCAACGGTCGGACCAAACTCGTAAGCAGACTGTCTCCATCTGTCAACACAAACGGACCGTACAGTCTCGTGATGGAAGCCAAGAAGCTAGTCTTGTACTACACGACAAACAAAACTCCGAAACCAATCGCTTATTTTGAATACGAATTCTTCACCAAGATAACACAATTCCAGTCAATGACGTTCCAAGCTGTGGAAGATTCCGACACAACGTGGGGTCTAGTCATGGAAGGTGTCGATTCTGGTTCTAAATTCAACGTTTCAACGTTCCTCTCACGGCCGAAACACAACGCGACGTTGAGTTTTATTCGGTTAGAATCAGACGGAAACATCAGAGTTTGGAGTTACAGTACGTTGGCGACTTCCACGGCTTGGGACGTGACATACACGGCGTTTACCAACGCCGACACTGACGGTAACGACGAGTGTAGGATCCCTGAGCATTGTTTGGGGTTTGGTTTGTGTAAGAAAGGCCAGTGTAACGCTTGTCCTAGCGACAAAGGGCTTCTTGGTTGGGACGAGACATGTAAATCTCCAAGTCTCGCAAGTTGCGATCCCAAGACATTTCACTACTTCAAGATCGAAGGAGCTGATAGTTTCATGACAAAATATAACGGTGGATCATCGACGACGGAGAGTGCGTGTGGGGACAAGTGTACGAGAGATTGCAAATGTTTAGGGTTTTTCTACAATAGAAAGAGTTCGAGGTGTTGGTTGGGCTACGAGCTCAAGACATTGACTAGAACCGGAGATTCTTCCCTGGTTGCTTATGTCAAAACTCCTAATGCAAACAAAAAGTCAACTCTTTGAGGTCTGAAAGTCatatatatatatGAAATTATTGTGTTGTGTGTTTAATAAGGTTCGTTTGTGTACCTTTTTAAAAATAAATGGTGTACTGATTCTCAAGATAAATCCTAATACAAAGTGAAGTGAAAGGAATCAATTTCTGaaaaaaaaaaaaaaaa


Protein sequences

Name Description Sequence
At.19832 translated coding region predicted by ESTScan from UniGene At.19832

MKFSITLALCFTLSIFLIGSQAKVPVDDQFRVVNEGGYTDYSPIEYNPDVRGFVPFSDNFRLCFYNTTPNAYTLALRIGNRVQESTLRWVWEANRGSPVKENATLTFGEDGNLVLAEADGRLVWQTNTANKGAVGIKILENGNMVIYDSSGKFVWQSFDSPTDTLLVGQSLKLNGRTKLVSRLSPSVNTNGPYSLVMEAKKLVLYYTTNKTPKPIAYFEYEFFTKITQFQSMTFQAVEDSDTTWGLVMEGVDSGSKFNVSTFLSRPKHNATLSFIRLESDGNIRVWSYSTLATSTAWDVTYTAFTNADTDGNDECRIPEHCLGFGLCKKGQCNACPSDKGLLGWDETCKSPSLASCDPKTFHYFKIEGADSFMTKYNGGSSTTESACGDKCTRDCKCLGFFYNRKSSRCWLGYELKTLTRTGDSSLVAYVKTPNANKKSTL


Domains

Domain Start-End Description Sequence

HMMPIR: PIRSF002686
IPR024179
 1-438 SLG
S-locus glycoprotein, mannose-binding-type

MKFSITLALCFTLSIFLIGSQAKVPVDDQFRVVNEGGYTDYSPIEYNPDVRGFVPFSDNFRLCFYNTTPNAYTLALRIGNRVQESTLRWVWEANRGSPVKENATLTFGEDGNLVLAEADGRLVWQTNTANKGAVGIKILENGNMVIYDSSGKFVWQSFDSPTDTLLVGQSLKLNGRTKLVSRLSPSVNTNGPYSLVMEAKKLVLYYTTNKTPKPIAYFEYEFFTKITQFQSMTFQAVEDSDTTWGLVMEGVDSGSKFNVSTFLSRPKHNATLSFIRLESDGNIRVWSYSTLATSTAWDVTYTAFTNADTDGNDECRIPEHCLGFGLCKKGQCNACPSDKGLLGWDETCKSPSLASCDPKTFHYFKIEGADSFMTKYNGGSSTTESACGDKCTRDCKCLGFFYNRKSSRCWLGYELKTLTRTGDSSLVAYVKTPNANKK

HMMPanther: PTHR11795
15-420 PTHR11795,UNCHARACTERIZED

IFLIGSQAKVPVDDQFRVVNEGGYTDYSPIEYNPDVRGFVPFSDNFRLCFYNTTPNAYTLALRIGNRVQESTLRWVWEANRGSPVKENATLTFGEDGNLVLAEADGRLVWQTNTANKGAVGIKILENGNMVIYDSSGKFVWQSFDSPTDTLLVGQSLKLNGRTKLVSRLSPSVNTNGPYSLVMEAKKLVLYYTTNKTPKPIAYFEYEFFTKITQFQSMTFQAVEDSDTTWGLVMEGVDSGSKFNVSTFLSRPKHNATLSFIRLESDGNIRVWSYSTLATSTAWDVTYTAFTNADTDGNDECRIPEHCLGFGLCKKGQCNACPSDKGLLGWDETCKSPSLASCDPKTFHYFKIEGADSFMTKYNGGSSTTESACGDKCTRDCKCLGFFYNRKSSRCWLGYELKTLTR

HMMPanther: PTHR11795:SF317
15-420 PTHR11795:SF317,CURCULIN-LIKE (MANNOSE-BINDING) LECTIN FAMILY PROTEIN

IFLIGSQAKVPVDDQFRVVNEGGYTDYSPIEYNPDVRGFVPFSDNFRLCFYNTTPNAYTLALRIGNRVQESTLRWVWEANRGSPVKENATLTFGEDGNLVLAEADGRLVWQTNTANKGAVGIKILENGNMVIYDSSGKFVWQSFDSPTDTLLVGQSLKLNGRTKLVSRLSPSVNTNGPYSLVMEAKKLVLYYTTNKTPKPIAYFEYEFFTKITQFQSMTFQAVEDSDTTWGLVMEGVDSGSKFNVSTFLSRPKHNATLSFIRLESDGNIRVWSYSTLATSTAWDVTYTAFTNADTDGNDECRIPEHCLGFGLCKKGQCNACPSDKGLLGWDETCKSPSLASCDPKTFHYFKIEGADSFMTKYNGGSSTTESACGDKCTRDCKCLGFFYNRKSSRCWLGYELKTLTR

ProfileScan: PS50927
IPR001480
 29-159 BULB_LECTIN
Bulb-type lectin domain

QFRVVNEGGYTDYSPIEYNPDVRGFVPFSDNFRLCFYNTTPNAYTLALRIGNRVQESTLRWVWEANRGSPVKENATLTFGEDGNLVLAEADGRLVWQTNTANKGAVGIKILENGNMVIYDSSGKFVWQSFD

HMMSmart: SM00108
IPR001480
 46-161 B_lectin
Bulb-type lectin domain

YNPDVRGFVPFSDNFRLCFYNTTPNAYTLALRIGNRVQESTLRWVWEANRGSPVKENATLTFGEDGNLVLAEADGRLVWQTNTANKGAVGIKILENGNMVIYDSSGKFVWQSFDSP

superfamily: SSF51110
IPR001480
 68-299 B_lectin
Bulb-type lectin domain

TPNAYTLALRIGNRVQESTLRWVWEANRGSPVKENATLTFGEDGNLVLAEADGRLVWQTNTANKGAVGIKILENGNMVIYDSSGKFVWQSFDSPTDTLLVGQSLKLNGRTKLVSRLSPSVNTNGPYSLVMEAKKLVLYYTTNKTPKPIAYFEYEFFTKITQFQSMTFQAVEDSDTTWGLVMEGVDSGSKFNVSTFLSRPKHNATLSFIRLESDGNIRVWSYSTLATSTAWDV

Gene3D: G3DSA:2.90.10.10
IPR001480
 85-210 Bulb-type_lectin_dom
Bulb-type lectin domain

STLRWVWEANRGSPVKENATLTFGEDGNLVLAEADGRLVWQTNTANKGAVGIKILENGNMVIYDSSGKFVWQSFDSPTDTLLVGQSLKLNGRTKLVSRLSPSVNTNGPYSLVMEAKKLVLYYTTNK

HMMPfam: PF01453
IPR001480
 88-184 B_lectin
Bulb-type lectin domain

RWVWEANRGSPVKENATLTFGEDGNLVLAEADGRLVWQTNTANKGAVGIKILENGNMVIYDSSGKFVWQSFDSPTDTLLVGQSLKLNGRTKLVSRLS

ProfileScan: PS50948
IPR003609
 356-433 PAN
Apple-like

CDPKTFHYFKIEGADSFMTKYNGGSSTTESACGDKCTRDCKCLGFFYNRKSSRCWLGYELKTLTRTGDSSLVAYVKTP






List of Contributions

There has not been any contribution yet.


Analyses

Blast

Blast matches against Reference R-Genes. Show


Retrieved from "http://prgdb.crg.eu/w/index.php?title=Gene:PRGDB00065999&oldid=21332"
Personal tools
Namespaces

Variants
Actions
PRGDB
META-SPECIES
Wiki
Toolbox