PRGDB00066105 (At.24853)

At.24853
Gene Type	Putative_R-Genes,_predicted_from_NCBI_UniGene
GenBank	23296568 (AY142550)
Gene Class	Unknown
Domain Type
Gene Species	Arabidopsis thaliana
	Comment?

Arabidopsis thaliana clone RAFL08-11-L01 (R11180) mRNA sequence

DNA Sequence

TGAAACCAAACTTTCGTCTTCTTCCCGGCTTTACTCTCTTTCTCTCTCCACCGTCGGCTCAGATCTAGACGGAAATGTGCCGGTGAAATCGAATCATGAAAAGATCTCACATTTCGTCTCCTCGTTCTTATTCACGACCAGCGATTTCAATCTTCGGTGTCTTCCTCTTGTTTCTTCTGGTTTTAACACTAAGCTCTCGAAAACCATCAGATTCATCCTCCGGTTTAGCTCCAAATCGAAACTTAGCCACAAAATCGACGATTCCGAGGTTTGCGTATTTGGTAACGGGAACGAAAGGAGATGGGAAACGAGTGAAGCGGCTGCTTAAAGCAATACATCATCCGAGAAATTACTATCTGCTTCATTTGGATCTCGAAGCTTCAGATGAAGAGAGAATGGAGCTGGCGAAGTATGTGAGATCGGAGAAGAAGAAGTTTGAGAATGTTATGGTAATGGGTTTAGCTGATTTGGTTACGGAGAAAGGTCCAACGATGTTAGCTAGTACGCTTCATGGTGTTGCCATTTTGTTGAAGAAAGCTAAGGATTGGGATTGGTTTATTAATCTTAGTGCTTCTGATTATCCTTTAATGCCTCAAGATGATATTTTGCATATATTCTCATACTTGCCACGCTACCTGAACTTTATCGAGCACACAAGCAACATCGGTTGGAAAGAGTGAGGGAGCTAATATTATGAACCAAAGAGCAAGGCCTATCATTATTGATCCTGGTTTTTACCATTTGAAGAAATCTGGTGTCTTTTGGGCTAAAGAACGGAGATCTTTGCCTGCTTCATTCAAACTTTTCATGGGTTCAACCAGCGTTGCTTTAACAAGACCGTTCCTCGAGTTTTGCATTTGGGGATGGGATAATCTCCCAAGAACGCTATTGATGTACTATACCAACTTCCTCTTGTCATCTGAAGGCTACTTTCAGACAGTTGTGTGCAACAATAAAGATTATCAGAACACAACGGTTAACCACGACCTGCATTACACAAAATGGGATCCaaaagaaaagaggaaaaaaTGGACTATATGTATGGACCAGGGAGACACCATCTGTTTGTACCAGGACCAGTGAACATACCGGAACCGGTAATCCGGGCGATGAACCGGAACAACGAGGATTACCGGTCACCAGCCATTCCGGCGCTTACGAAAACATTGTTGGAGGATGTTAAGAAGATATTCAAGACCACATCAGGGACACCTTTTCTGTTTCCCACGACCGGGGCTGGTGCTTGGGAGAGTGCCTTGACCAACACGTTATCTCCTGGAGACAGGATTGTTTCGTTTCTGATTGGACAATTTAGCTTGCTCTGGATTGACCAGCAGAAGAGGCTTAATTTCAATGTTGATGTGGTTGAGAGTGATTGGGGACAAGGTGCTAATCTCCAAGTCTTGGCCTCAAAGCTCTCACAAGACGAGAATCATACCATCAAAGCCATTTGCATTGTCCACAACGAGACCGCGACCGGAGTTACCAATGACATCTCTGCTGTCCGCACACTCCTCGATCACTACAAGCATCCGGCTTTGCTGCTAGTGGACGGTGTTTCGTCCATCTGCGCGCTTGATTTCCGAATGGATGAGTGGGGAGTGGACGTGGCCTTGACTGGGTCTCAGAAAGCCTTATCTCTTCCAACAGGACTTGGTATTGTCTGCGCCAGTCCTAAAGCTTTGGAAGCTGCCAAAACTTCTAAATCTCTCAAAGTATTCTTTGACTGGAATGACTACCTTAAGTTTTACAAGCTAGGAACCTATTGGCCATACACACCTTCCATTCAACTTCTCTACGGTCTTAGAGCTGCTCTTGATCTTATCTTTGAGGAAGGACTTGAGAACATCATCGCCCGCCATGCTCGTTTGGGAAAGGCCACCAGGCTTGCGGTGGAAGCATGGGGGCTGAAAAACTGCACACAGAAGGAGGAATGGATAAGTAACACAGTGACAGCAGTTATGGTGCCTCCGCATATAGACGGTTCGGAGATTGTGAGAAGGGCATGGCAGAGGTACAACTTAAGTCTTGGTCTTGGTCTCAACAAAGTGGCTGGAAAGGTTTTCAGAATTGGACACCTAGGAAATGTGAATGAGTTGCAACTTCTCGGGTGTCTTGCGGGAGTGGAGATGATACTGAAGGATGTTGGATACCCAGTTGTAATGGGAAGTGGAGTTGCAGCTGCCTCTACTTATCTTCAGCACCACATTCCTCTCATTCCCTCTAGAATCTAATCCATGTGGtccttctctttctttctcttcctctcaatgtaaacaaactctcatgttttctctaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagaaaaaaaaaaaaaaaa

Protein sequences

Name	Description	Sequence
At.24853	translated coding region predicted by ESTScan from UniGene At.24853	XETKLSSSSRLYSLSLSTVGSDLDGNVPVKSNHEKISHFVSSFLFTTSDFNLRCLPLVSSGFNTKLSKTIRFILRFSSKSKLSHKIDDSEVCVFGNGKKGDGKRVKRLLKAIHHPRNYYLLHLDLEASDEERMELAKYVRSEKKKFENVMVMGLADLVTEKGPTMLASTLHGVAILLKKAKDWDWFINLSASDYPLMPQDDILHIFSYLPRYLNFIEQQATSVGKSEGANIMNQRARPIIIDPGFYHLKKSGVFWAKERRSLPASFKLFMGSTSVALTRPFLEFCIWGWDNLPRTLLMYYTNFLLSSEGYFQTVVCNNKDYQNTTVNHDLHYTKWDPKEKRXKMDYMYGPGRHHLFVPGPVNIPEPVIRAMNRNNEDYRSPAIPALTKTLLEDVKKIFKTTSGTPFLFPTTGAGAWESALTNTLSPGDRIVSFLIGQFSLLWIDQQKRLNFNVDVVESDWGQGANLQVLASKLSQDENHTIKAICIVHNETATGVTNDISAVRTLLDHYKHPALLLVDGVSSICALDFRMDEWGVDVALTGSQKALSLPTGLGIVCASPKALEAAKTSKSLKVFFDWNDYLKFYKLGTYWPYTPSIQLLYGLRAALDLIFEEGLENIIARHARLGKATRLAVEAWGLKNCTQKEEWISNTVTAVMVPPHIDGSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGNVNELQLLGCLAGVEMILKDVGYPVVMGSGVAAASTYLQHHIPLIPSRI

Domains

Domain	Start-End	Description	Sequence
Seg: seg	5-17	seg	LSSSSRLYSLSLS
HMMPfam: PF02485 IPR003406	99-344	Branch Glycosyl transferase, family 14	KGDGKRVKRLLKAIHHPRNYYLLHLDLEASDEERMELAKYVRSEKKKFENVMVMGLADLVTEKGPTMLASTLHGVAILLKKAKDWDWFINLSASDYPLMPQDDILHIFSYLPRYLNFIEQQATSVGKSEGANIMNQRARPIIIDPGFYHLKKSGVFWAKERRSLPASFKLFMGSTSVALTRPFLEFCIWGWDNLPRTLLMYYTNFLLSSEGYFQTVVCNNKDYQNTTVNHDLHYTKWDPKEKRXKM
HMMPanther: PTHR21152:SF7	342-744	SUBFAMILY NOT NAMED,SUBFAMILY NOT NAMED	XKMDYMYGPGRHHLFVPGPVNIPEPVIRAMNRNNEDYRSPAIPALTKTLLEDVKKIFKTTSGTPFLFPTTGAGAWESALTNTLSPGDRIVSFLIGQFSLLWIDQQKRLNFNVDVVESDWGQGANLQVLASKLSQDENHTIKAICIVHNETATGVTNDISAVRTLLDHYKHPALLLVDGVSSICALDFRMDEWGVDVALTGSQKALSLPTGLGIVCASPKALEAAKTSKSLKVFFDWNDYLKFYKLGTYWPYTPSIQLLYGLRAALDLIFEEGLENIIARHARLGKATRLAVEAWGLKNCTQKEEWISNTVTAVMVPPHIDGSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGNVNELQLLGCLAGVEMILKDVGYPVVMGSGVAAASTYLQHHIPLIPSRI
HMMPanther: PTHR21152	342-744	FAMILY NOT NAMED,AMINOTRANSFERASE CLASS V	XKMDYMYGPGRHHLFVPGPVNIPEPVIRAMNRNNEDYRSPAIPALTKTLLEDVKKIFKTTSGTPFLFPTTGAGAWESALTNTLSPGDRIVSFLIGQFSLLWIDQQKRLNFNVDVVESDWGQGANLQVLASKLSQDENHTIKAICIVHNETATGVTNDISAVRTLLDHYKHPALLLVDGVSSICALDFRMDEWGVDVALTGSQKALSLPTGLGIVCASPKALEAAKTSKSLKVFFDWNDYLKFYKLGTYWPYTPSIQLLYGLRAALDLIFEEGLENIIARHARLGKATRLAVEAWGLKNCTQKEEWISNTVTAVMVPPHIDGSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGNVNELQLLGCLAGVEMILKDVGYPVVMGSGVAAASTYLQHHIPLIPSRI
superfamily: SSF53383 IPR015424	350-720	PLP-dependent transferases Pyridoxal phosphate-dependent transferase, major d	PGRHHLFVPGPVNIPEPVIRAMNRNNEDYRSPAIPALTKTLLEDVKKIFKTTSGTPFLFPTTGAGAWESALTNTLSPGDRIVSFLIGQFSLLWIDQQKRLNFNVDVVESDWGQGANLQVLASKLSQDENHTIKAICIVHNETATGVTNDISAVRTLLDHYKHPALLLVDGVSSICALDFRMDEWGVDVALTGSQKALSLPTGLGIVCASPKALEAAKTSKSLKVFFDWNDYLKFYKLGTYWPYTPSIQLLYGLRAALDLIFEEGLENIIARHARLGKATRLAVEAWGLKNCTQKEEWISNTVTAVMVPPHIDGSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGNVNELQLLGCLAGVEMILKDVGYPV
HMMPfam: PF00266 IPR000192	355-667	Aminotran_5 Aminotransferase, class V/Cysteine desulfurase	LFVPGPVNIPEPVIRAMNRNNEDYRSPAIPALTKTLLEDVKKIFKTTSGTPFLFPTTGAGAWESALTNTLSPGDRIVSFLIGQFSLLWIDQQKRLNFNVDVVESDWGQGANLQVLASKLSQDENHTIKAICIVHNETATGVTNDISAVRTLLDHYKHPALLLVDGVSSICALDFRMDEWGVDVALTGSQKALSLPTGLGIVCASPKALEAAKTSKSLKVFFDWNDYLKFYKLGTYWPYTPSIQLLYGLRAALDLIFEEGLENIIARHARLGKATRLAVEAWGLKNCTQKEEWISNTVTAVMVPPHIDGSEIVR
Gene3D: G3DSA:3.40.640.10 IPR015421	364-600	no description Pyridoxal phosphate-dependent transferase, major r	PEPVIRAMNRNNEDYRSPAIPALTKTLLEDVKKIFKTTSGTPFLFPTTGAGAWESALTNTLSPGDRIVSFLIGQFSLLWIDQQKRLNFNVDVVESDWGQGANLQVLASKLSQDENHTIKAICIVHNETATGVTNDISAVRTLLDHYKHPALLLVDGVSSICALDFRMDEWGVDVALTGSQKALSLPTGLGIVCASPKALEAAKTSKSLKVFFDWNDYLKFYKLGTYWPYTPSIQLLY
PatternScan: PS00595 IPR020578	535-555	AA_TRANSFER_CLASS_5 Aminotransferase class-V pyridoxal-phosphate bindi	VDVALTGSQKALSLPTGLGIV
Gene3D: G3DSA:3.90.1150.10 IPR015422	601-726	no description Pyridoxal phosphate-dependent transferase, major r	GLRAALDLIFEEGLENIIARHARLGKATRLAVEAWGLKNCTQKEEWISNTVTAVMVPPHIDGSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGNVNELQLLGCLAGVEMILKDVGYPVVMGSGV

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Analyses

Blast

Blast matches against Reference R-Genes. Show