PRGDB00066105 (At.24853)

From PRG Wiki
Jump to: navigation, search
At.24853
Gene Type Putative_R-Genes,_predicted_from_NCBI_UniGene
GenBank 23296568 (AY142550)
Gene Class Unknown
Domain Type
Gene Species Arabidopsis thaliana

Comment?

Arabidopsis thaliana clone RAFL08-11-L01 (R11180) mRNA sequence

DNA Sequence

TGAAACCAAACTTTCGTCTTCTTCCCGGCTTTACTCTCTTTCTCTCTCCACCGTCGGCTCAGATCTAGACGGAAATGTGCCGGTGAAATCGAATCATGAAAAGATCTCACATTTCGTCTCCTCGTTCTTATTCACGACCAGCGATTTCAATCTTCGGTGTCTTCCTCTTGTTTCTTCTGGTTTTAACACTAAGCTCTCGAAAACCATCAGATTCATCCTCCGGTTTAGCTCCAAATCGAAACTTAGCCACAAAATCGACGATTCCGAGGTTTGCGTATTTGGTAACGGGAACGAAAGGAGATGGGAAACGAGTGAAGCGGCTGCTTAAAGCAATACATCATCCGAGAAATTACTATCTGCTTCATTTGGATCTCGAAGCTTCAGATGAAGAGAGAATGGAGCTGGCGAAGTATGTGAGATCGGAGAAGAAGAAGTTTGAGAATGTTATGGTAATGGGTTTAGCTGATTTGGTTACGGAGAAAGGTCCAACGATGTTAGCTAGTACGCTTCATGGTGTTGCCATTTTGTTGAAGAAAGCTAAGGATTGGGATTGGTTTATTAATCTTAGTGCTTCTGATTATCCTTTAATGCCTCAAGATGATATTTTGCATATATTCTCATACTTGCCACGCTACCTGAACTTTATCGAGCACACAAGCAACATCGGTTGGAAAGAGTGAGGGAGCTAATATTATGAACCAAAGAGCAAGGCCTATCATTATTGATCCTGGTTTTTACCATTTGAAGAAATCTGGTGTCTTTTGGGCTAAAGAACGGAGATCTTTGCCTGCTTCATTCAAACTTTTCATGGGTTCAACCAGCGTTGCTTTAACAAGACCGTTCCTCGAGTTTTGCATTTGGGGATGGGATAATCTCCCAAGAACGCTATTGATGTACTATACCAACTTCCTCTTGTCATCTGAAGGCTACTTTCAGACAGTTGTGTGCAACAATAAAGATTATCAGAACACAACGGTTAACCACGACCTGCATTACACAAAATGGGATCCaaaagaaaagaggaaaaaaTGGACTATATGTATGGACCAGGGAGACACCATCTGTTTGTACCAGGACCAGTGAACATACCGGAACCGGTAATCCGGGCGATGAACCGGAACAACGAGGATTACCGGTCACCAGCCATTCCGGCGCTTACGAAAACATTGTTGGAGGATGTTAAGAAGATATTCAAGACCACATCAGGGACACCTTTTCTGTTTCCCACGACCGGGGCTGGTGCTTGGGAGAGTGCCTTGACCAACACGTTATCTCCTGGAGACAGGATTGTTTCGTTTCTGATTGGACAATTTAGCTTGCTCTGGATTGACCAGCAGAAGAGGCTTAATTTCAATGTTGATGTGGTTGAGAGTGATTGGGGACAAGGTGCTAATCTCCAAGTCTTGGCCTCAAAGCTCTCACAAGACGAGAATCATACCATCAAAGCCATTTGCATTGTCCACAACGAGACCGCGACCGGAGTTACCAATGACATCTCTGCTGTCCGCACACTCCTCGATCACTACAAGCATCCGGCTTTGCTGCTAGTGGACGGTGTTTCGTCCATCTGCGCGCTTGATTTCCGAATGGATGAGTGGGGAGTGGACGTGGCCTTGACTGGGTCTCAGAAAGCCTTATCTCTTCCAACAGGACTTGGTATTGTCTGCGCCAGTCCTAAAGCTTTGGAAGCTGCCAAAACTTCTAAATCTCTCAAAGTATTCTTTGACTGGAATGACTACCTTAAGTTTTACAAGCTAGGAACCTATTGGCCATACACACCTTCCATTCAACTTCTCTACGGTCTTAGAGCTGCTCTTGATCTTATCTTTGAGGAAGGACTTGAGAACATCATCGCCCGCCATGCTCGTTTGGGAAAGGCCACCAGGCTTGCGGTGGAAGCATGGGGGCTGAAAAACTGCACACAGAAGGAGGAATGGATAAGTAACACAGTGACAGCAGTTATGGTGCCTCCGCATATAGACGGTTCGGAGATTGTGAGAAGGGCATGGCAGAGGTACAACTTAAGTCTTGGTCTTGGTCTCAACAAAGTGGCTGGAAAGGTTTTCAGAATTGGACACCTAGGAAATGTGAATGAGTTGCAACTTCTCGGGTGTCTTGCGGGAGTGGAGATGATACTGAAGGATGTTGGATACCCAGTTGTAATGGGAAGTGGAGTTGCAGCTGCCTCTACTTATCTTCAGCACCACATTCCTCTCATTCCCTCTAGAATCTAATCCATGTGGtccttctctttctttctcttcctctcaatgtaaacaaactctcatgttttctctaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagaaaaaaaaaaaaaaaa


Protein sequences

Name Description Sequence
At.24853 translated coding region predicted by ESTScan from UniGene At.24853

XETKLSSSSRLYSLSLSTVGSDLDGNVPVKSNHEKISHFVSSFLFTTSDFNLRCLPLVSSGFNTKLSKTIRFILRFSSKSKLSHKIDDSEVCVFGNGKKGDGKRVKRLLKAIHHPRNYYLLHLDLEASDEERMELAKYVRSEKKKFENVMVMGLADLVTEKGPTMLASTLHGVAILLKKAKDWDWFINLSASDYPLMPQDDILHIFSYLPRYLNFIEQQATSVGKSEGANIMNQRARPIIIDPGFYHLKKSGVFWAKERRSLPASFKLFMGSTSVALTRPFLEFCIWGWDNLPRTLLMYYTNFLLSSEGYFQTVVCNNKDYQNTTVNHDLHYTKWDPKEKRXKMDYMYGPGRHHLFVPGPVNIPEPVIRAMNRNNEDYRSPAIPALTKTLLEDVKKIFKTTSGTPFLFPTTGAGAWESALTNTLSPGDRIVSFLIGQFSLLWIDQQKRLNFNVDVVESDWGQGANLQVLASKLSQDENHTIKAICIVHNETATGVTNDISAVRTLLDHYKHPALLLVDGVSSICALDFRMDEWGVDVALTGSQKALSLPTGLGIVCASPKALEAAKTSKSLKVFFDWNDYLKFYKLGTYWPYTPSIQLLYGLRAALDLIFEEGLENIIARHARLGKATRLAVEAWGLKNCTQKEEWISNTVTAVMVPPHIDGSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGNVNELQLLGCLAGVEMILKDVGYPVVMGSGVAAASTYLQHHIPLIPSRI

Domains

Domain Start-End Description Sequence

Seg: seg
5-17 seg

LSSSSRLYSLSLS

HMMPfam: PF02485
IPR003406
99-344 Branch
Glycosyl transferase, family 14

KGDGKRVKRLLKAIHHPRNYYLLHLDLEASDEERMELAKYVRSEKKKFENVMVMGLADLVTEKGPTMLASTLHGVAILLKKAKDWDWFINLSASDYPLMPQDDILHIFSYLPRYLNFIEQQATSVGKSEGANIMNQRARPIIIDPGFYHLKKSGVFWAKERRSLPASFKLFMGSTSVALTRPFLEFCIWGWDNLPRTLLMYYTNFLLSSEGYFQTVVCNNKDYQNTTVNHDLHYTKWDPKEKRXKM

HMMPanther: PTHR21152:SF7
342-744 SUBFAMILY NOT NAMED,SUBFAMILY NOT NAMED

XKMDYMYGPGRHHLFVPGPVNIPEPVIRAMNRNNEDYRSPAIPALTKTLLEDVKKIFKTTSGTPFLFPTTGAGAWESALTNTLSPGDRIVSFLIGQFSLLWIDQQKRLNFNVDVVESDWGQGANLQVLASKLSQDENHTIKAICIVHNETATGVTNDISAVRTLLDHYKHPALLLVDGVSSICALDFRMDEWGVDVALTGSQKALSLPTGLGIVCASPKALEAAKTSKSLKVFFDWNDYLKFYKLGTYWPYTPSIQLLYGLRAALDLIFEEGLENIIARHARLGKATRLAVEAWGLKNCTQKEEWISNTVTAVMVPPHIDGSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGNVNELQLLGCLAGVEMILKDVGYPVVMGSGVAAASTYLQHHIPLIPSRI

HMMPanther: PTHR21152
342-744 FAMILY NOT NAMED,AMINOTRANSFERASE CLASS V

XKMDYMYGPGRHHLFVPGPVNIPEPVIRAMNRNNEDYRSPAIPALTKTLLEDVKKIFKTTSGTPFLFPTTGAGAWESALTNTLSPGDRIVSFLIGQFSLLWIDQQKRLNFNVDVVESDWGQGANLQVLASKLSQDENHTIKAICIVHNETATGVTNDISAVRTLLDHYKHPALLLVDGVSSICALDFRMDEWGVDVALTGSQKALSLPTGLGIVCASPKALEAAKTSKSLKVFFDWNDYLKFYKLGTYWPYTPSIQLLYGLRAALDLIFEEGLENIIARHARLGKATRLAVEAWGLKNCTQKEEWISNTVTAVMVPPHIDGSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGNVNELQLLGCLAGVEMILKDVGYPVVMGSGVAAASTYLQHHIPLIPSRI

superfamily: SSF53383
IPR015424
350-720 PLP-dependent transferases
Pyridoxal phosphate-dependent transferase, major d

PGRHHLFVPGPVNIPEPVIRAMNRNNEDYRSPAIPALTKTLLEDVKKIFKTTSGTPFLFPTTGAGAWESALTNTLSPGDRIVSFLIGQFSLLWIDQQKRLNFNVDVVESDWGQGANLQVLASKLSQDENHTIKAICIVHNETATGVTNDISAVRTLLDHYKHPALLLVDGVSSICALDFRMDEWGVDVALTGSQKALSLPTGLGIVCASPKALEAAKTSKSLKVFFDWNDYLKFYKLGTYWPYTPSIQLLYGLRAALDLIFEEGLENIIARHARLGKATRLAVEAWGLKNCTQKEEWISNTVTAVMVPPHIDGSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGNVNELQLLGCLAGVEMILKDVGYPV

HMMPfam: PF00266
IPR000192
355-667 Aminotran_5
Aminotransferase, class V/Cysteine desulfurase

LFVPGPVNIPEPVIRAMNRNNEDYRSPAIPALTKTLLEDVKKIFKTTSGTPFLFPTTGAGAWESALTNTLSPGDRIVSFLIGQFSLLWIDQQKRLNFNVDVVESDWGQGANLQVLASKLSQDENHTIKAICIVHNETATGVTNDISAVRTLLDHYKHPALLLVDGVSSICALDFRMDEWGVDVALTGSQKALSLPTGLGIVCASPKALEAAKTSKSLKVFFDWNDYLKFYKLGTYWPYTPSIQLLYGLRAALDLIFEEGLENIIARHARLGKATRLAVEAWGLKNCTQKEEWISNTVTAVMVPPHIDGSEIVR

Gene3D: G3DSA:3.40.640.10
IPR015421
364-600 no description
Pyridoxal phosphate-dependent transferase, major r

PEPVIRAMNRNNEDYRSPAIPALTKTLLEDVKKIFKTTSGTPFLFPTTGAGAWESALTNTLSPGDRIVSFLIGQFSLLWIDQQKRLNFNVDVVESDWGQGANLQVLASKLSQDENHTIKAICIVHNETATGVTNDISAVRTLLDHYKHPALLLVDGVSSICALDFRMDEWGVDVALTGSQKALSLPTGLGIVCASPKALEAAKTSKSLKVFFDWNDYLKFYKLGTYWPYTPSIQLLY

PatternScan: PS00595
IPR020578
535-555 AA_TRANSFER_CLASS_5
Aminotransferase class-V pyridoxal-phosphate bindi

VDVALTGSQKALSLPTGLGIV

Gene3D: G3DSA:3.90.1150.10
IPR015422
601-726 no description
Pyridoxal phosphate-dependent transferase, major r

GLRAALDLIFEEGLENIIARHARLGKATRLAVEAWGLKNCTQKEEWISNTVTAVMVPPHIDGSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGNVNELQLLGCLAGVEMILKDVGYPVVMGSGV






List of Contributions

There has not been any contribution yet.


Analyses

Blast

Blast matches against Reference R-Genes. Show


Personal tools
Namespaces

Variants
Actions
PRGDB
META-SPECIES
Wiki
Toolbox