PRGDB00066107 (At.25012)
| At.25012 | |
|---|---|
| Gene Type | Putative_R-Genes,_predicted_from_NCBI_UniGene |
| GenBank | 222424033 (AK317302) |
| Gene Class | Unknown |
| Domain Type | |
| Gene Species | Arabidopsis thaliana |
DNA Sequence
ATAAAAGCCCCTAATTTTTTCTCCGCCCAAGAGACAAAAATCCTTCGCAATCGAGCAACGGAAGCTCCTGCATCCACCGTCCAAATCTCTTCTAACGTCGCCGGAGATCGGTAAACCGGTTCTTCATCCCGTATTCATCTCTTATTGAGATCGTTGGGGAAGTAGAGAATGGCGACGTTTGAGCTGTACAGGAGATCGACGATCGGGATGTGTCTGACGGAGACTTTGGACGAGATGGTTCAGAGCGGTACGCTGAGCCCTGAGCTAGCTATCCAAGTCCTTGTTCAATTTGACAAGTCCATGACTGAAGCTCTGGAGAGCCAAGTGAAGACCAAGGTGTCCATCAAGGGACACCTGCACACTTACAGGTTCTGTGACAATGTCTGGACCTTCATATTACAGGACGCAATGTTCAAGAGTGACGATCGTCAAGAGAATGTGAGCCGGGTGAAGATAGTGGCATGTGATTCCAAGCTGCTCACACAGTGAGATGCAAATTGTCTGCAGGGAATTTACTTTCCTTTGTACTAGATTTTGAGTTTTTTCACTTTGTAAACTCAGCACTTGCTATATATGTTGAGCACTTGCTATATGTTGAGCTCCATCTGCAGCCATCAATTTAGCCTATATGTAAATTCTCGGCCCAAGGACATAAGGATACATTCTGTTGCTATGAGAAAGTTCTTGAGCTTCaaaaaaaaaaaaaaaaaaa
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| At.25012 | translated coding region predicted by ESTScan from UniGene At.25012 | MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQVKTKVSIKGHLHTYRFCDNVWTFILQDAMFKSDDRQENVSRVKIVACDSKLLTQ |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| HMMPIR: PIRSF009415 IPR003194
|
1-106 | Transcription initiation factor IIA, gamma subunit Transcription initiation factor IIA, gamma subunit
|
MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQVKTKVSIKGHLHTYRFCDNVWTFILQDAMFKSDDRQENVSRVKIVACDSKLLTQ |
| HMMPanther: PTHR10966 IPR003194
|
1-103 | TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 2 Transcription initiation factor IIA, gamma subunit
|
MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQVKTKVSIKGHLHTYRFCDNVWTFILQDAMFKSDDRQENVSRVKIVACDSKL |
| BlastProDom: PD009224 IPR015872
|
1-50 | T2AG_ARATH_Q39236; Transcription initiation factor IIA, gamma subunit
|
MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALE |
| Gene3D: G3DSA:1.10.287.190 IPR015872
|
2-54 | no description Transcription initiation factor IIA, gamma subunit
|
ATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQVK |
| HMMPfam: PF02268 IPR015872
|
3-50 | TFIIA_gamma_N Transcription initiation factor IIA, gamma subunit
|
TFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALE |
| superfamily: SSF47396 IPR009083
|
4-54 | Transcription factor IIA (TFIIA), alpha-helical domain Transcription factor IIA, helical
|
FELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQVK |
| superfamily: SSF50784 IPR009088
|
52-102 | Transcription factor IIA (TFIIA), beta-barrel domain Transcription factor IIA, beta-barrel
|
QVKTKVSIKGHLHTYRFCDNVWTFILQDAMFKSDDRQENVSRVKIVACDSK |
| HMMPfam: PF02751 IPR015871
|
52-101 | TFIIA_gamma_C Transcription initiation factor IIA, gamma subunit
|
QVKTKVSIKGHLHTYRFCDNVWTFILQDAMFKSDDRQENVSRVKIVACDS |
| Gene3D: G3DSA:2.30.18.10 IPR009088
|
55-105 | no description Transcription factor IIA, beta-barrel
|
TKVSIKGHLHTYRFCDNVWTFILQDAMFKSDDRQENVSRVKIVACDSKLLT |
List of Contributions
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