PRGDB00066171 (At.27919)
| At.27919 | |
|---|---|
| Gene Type | Putative_R-Genes,_predicted_from_NCBI_UniGene |
| GenBank | 145339962 (NM_116577) |
| Gene Class | RLP |
| Domain Type | Ser-Thr Kinase, LRR |
| Gene Species | Arabidopsis thaliana |
DNA Sequence
TAATGAAGAACTTAAACTCTGTCTTAAACCCAAATAATTTCTGAATTTCTCCAGTTCTTTCTTCTTAATTTGCAGGTTTTGGTCCCACCGCTTAAATTAGGAAAAAGTTTCCTTTTTCGTTCTGGGTTTTCTTCTCTGATTATTATGATTCATTCCTCGAGTGTCGAGCTTTATTCTCAAGTGTCAAATTATTGAGGGTAAAATTTACTTCAACGACGAAAGTTCATTGAACCTTAGCTCTTACGTTGCGTCTTAAATCTCATTCTCACCCACaaaaaaagaaaagtttgcattttttttATCTCTCAGGATTGGGTTTTTGGGAATTTAAAGGAAAAGACTTTACCCTTTTATTCGTTTTAATTTCACCAACCCATTAAAGCTCGTTGATGACGATTCCTCTGCTTTTCCAATTCGTGGACATCGTTTTGTTCGATTGATGTTTCGTTTTACTCTACTCTGACTTGGAACAATGGCTGCTAAGAGATCTAtctactgtcttcttcttcttcctctgctcttgtctttactgatctggattccttcgatctccttAGCTGCTACTAACCCTGATGATGTTGCTGCAATTAACGGATTATTCGCTGCACTTGGAGCACCTGTTCTTCCTGGTTGGATTGCTTCTGGTGGAGACCCATGTGGTGAAGCTTGGCAAGGCATTATCTGCAATGTTTCAGATATTATAAGCATAACTGTAAATGCTGCAAATTTGCAAGGAGAGCTTGGTGACAACTTAGCTAAGTTCACTTCTATCAGGGGAATAGATTTCAGCAACAATCGCATTGGAGGAAGCATACCTTCTACTTTGCCGGTTACATTGCAGCATTTTTTTCTTTCAGCTAATCAGTTCACCGGAAGCATCCCGGAATCTCTAGGAACATTGAGTTTTCTGAATGACATGTCTTTGAACGATAACCTTCTCTCTGGAGAGCTACCCGACGTGTTTCAAAACCTTGTCGGGCTGATTAATCTTGATATATCATCTAACAATATAAGCGGCACATTGCCTCCTTCTATGGAGAATTTATTAACTCTTACAACATTACGTGTTCAGAACAATCAGCTCTCAGGAACTCTGGACGTTCTTCAAGGCCTTCCTCTTCAAGACTTAAACATAGAGAATAACCTCTTCTCTGGACCCATACCGGACAAATTACTAAGCATTCCGAAATTCCTACATGAAGGAAACCCGTTCAATGCCACAATGATCAATTCCACCTCGACTGCACCATCATTGTCTCCGTCTCTATCTCCAACAAAACCAGCTCCAACGCGACCATTTTCTGGAGTTCCACCTCCTCCAAATGAGAGGAATCGAGGGAAAGTTGCTGATGGACCTTCTGATTCAGAAGGATCGAGCTCTGAGAATTCAAAGGGAAAGAACTCTTCACATACTAAAAAGATAATCCTTATTGCATTCGCTGGCGTCCTCGTCTTCATAATTCTGGTTTTGGCAATACTCTTGCTGTTGCCAAAATGTGCAAGACGTAGAGAACATGCTAACAGAGTTTTCAAACCGCATCAAGTTGGTGCTGATAGAGGAAGCAGAGAGAATGCTCTGGAAAACGGGACTCCGGTACTGCCACCACCTGGTCGATCTGAAAAAGTTCAAAGAGAACCCTTCAAGAAAGCTGGAGAGGAACCAAAGGTCTTACATGACCTTGAGAGGCTGCGGAGACCTGCACCTATATCAAGACAGGAAAGTCAAGATATTGACTTTTCAATGTTGATgcctcctcctccaccacctccaccaccaccaccacctcctcctTTGGATGAGAAGGTCACGGTTATGCCAATCATATCACCCGAAAGACCCGTTAAGAAAACTTCCCCTAAACGCTTACCCTTAACTTCTGTGAAGCACTATTCTATTGCTTCTCTTCAACAATACACGGAAAGCTTCGCTCAGGAAAATCTCATTGGCTCAGGCATGCTCGGTAGTGTTTATAGGGCCCGGCTTCCCAATGGAAAGTTGTTTGCTGTCAAGAAGTTGGACAAGAGGGCTTCTGAACAACAACAGGATCACGAATTTATCGAACTAGTGAACAATATAGATATGATTCGCCACTCCAATATCGTTGAACTTGTGGGTTACTGTGCTGAGCACGATCAAAGACTATTGGTCTACGAATATTGCAGTAACGGTACGTTACAAGACGGGTTGCATTCAGACGATGAATTCAAGAAGAAACTTTCGTGGAATACCCGTGTCAGTATGGCACTTGGAGCTGCTAGAGCCCTTGAGTACTTGCATGAGGTGTGTGAACCACCTATCATACACAGAAACTTCAAATCAGCCAATGTTCTACTCGACGATGACCTGAGTGTTCTTGTCTCAGATTGTGGTTTGGCCCCACTAATATCATCAGGCTCTGTGAGTCAGTTATCAGGGCAATTGCTAGCCGCTTACGGATATGGAGCTCCAGAGTTCGACTCTGGAATCTATACATGGCAGAGTGATGTATATAGTTTTGGTGTTGTTATGTTAGAACTATTGACGGGTAGAATGTCCTACGATAGGGACCGGAGTAGAGGAGAGCAGTTCTTGGTGAGGTGGGCAATCCCACAGCTTCATGATATCGATGCATTGGGCAAAATGGTTGATCCATCTCTTAATGGACAATACCCTGCAAAGTCATTGTCACACTTTGCTGATATAATATCCCGGTGTGTTCAGTCTGAACCAGAATTTAGACCACTGATGTCAGAAGTTGTTCAAGATCTACTAGATATGATCAGAAGAGAGCGTCATGGTTCGGGTGATTCTACCGCGGACTAGTGAATTGTAAAGAAGCATTTTTTTATCGGATCATCTCTGTGAATTCGTGGAAACAAGAGATGTTCAGTTCTCAGAaacaacaacaacaacatagggaactaaaccagacacataaaaaaaaaaaaaaaaGCCAAAGCCTCAGAAGGAGGCTTAAGGAGGCTTAAGCTGATTCTACAGCCTTGTGAAGTGGCTCAGGGGAAAGGATCAATGTGCTTGCTTCCAATGGGCGATGATTCGATTGGTGCAGAGTTTCTTTTTGTGAATCTTGAATCATCTGTGTTAGTAATATGTATTGGTTGAAGACCTCTACTGTAAAATGGTGTGTTACTCGATTCTTTGAACTTGTTTTATTAAAACTTTAAAAGCTCATAGAACTTGCTCTGTGTTGTATTCTTTTAGTATGTGTGTGACTAAGTGTATTTGTGCCTGTAACATATTTATTTGTCT
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| At.27919 | translated coding region predicted by ESTScan from UniGene At.27919 | MAAKRSIYCLLLLPLLLSLLIWIPSISLAATNPDDVAAINGLFAALGAPVLPGWIASGGDPCGEAWQGIICNVSDIISITVNAANLQGELGDNLAKFTSIRGIDFSNNRIGGSIPSTLPVTLQHFFLSANQFTGSIPESLGTLSFLNDMSLNDNLLSGELPDVFQNLVGLINLDISSNNISGTLPPSMENLLTLTTLRVQNNQLSGTLDVLQGLPLQDLNIENNLFSGPIPDKLLSIPKFLHEGNPFNATMINSTSTAPSLSPSLSPTKPAPTRPFSGVPPPPNERNRGKVADGPSDSEGSSSENSKGKNSSHTKKIILIAFAGVLVFIILVLAILLLLPKCARRREHANRVFKPHQVGADRGSRENALENGTPVLPPPGRSEKVQREPFKKAGEEPKVLHDLERLRRPAPISRQESQDIDFSMLMPPPPPPPPPPPPPPLDEKVTVMPIISPERPVKKTSPKRLPLTSVKHYSIASLQQYTESFAQENLIGSGMLGSVYRARLPNGKLFAVKKLDKRASEQQQDHEFIELVNNIDMIRHSNIVELVGYCAEHDQRLLVYEYCSNGTLQDGLHSDDEFKKKLSWNTRVSMALGAARALEYLHEVCEPPIIHRNFKSANVLLDDDLSVLVSDCGLAPLISSGSVSQLSGQLLAAYGYGAPEFDSGIYTWQSDVYSFGVVMLELLTGRMSYDRDRSRGEQFLVRWAIPQLHDIDALGKMVDPSLNGQYPAKSLSHFADIISRCVQSEPEFRPLMSEVVQDLLDMIRRERHGSGDSTAD |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| HMMPanther: PTHR24420:SF890 | 1-767 | SRF3 (STRUBBELIG-RECEPTOR FAMILY 3); ATP BINDING / KINASE/ PROTEIN SERINE/THREO | MAAKRSIYCLLLLPLLLSLLIWIPSISLAATNPDDVAAINGLFAALGAPVLPGWIASGGDPCGEAWQGIICNVSDIISITVNAANLQGELGDNLAKFTSIRGIDFSNNRIGGSIPSTLPVTLQHFFLSANQFTGSIPESLGTLSFLNDMSLNDNLLSGELPDVFQNLVGLINLDISSNNISGTLPPSMENLLTLTTLRVQNNQLSGTLDVLQGLPLQDLNIENNLFSGPIPDKLLSIPKFLHEGNPFNATMINSTSTAPSLSPSLSPTKPAPTRPFSGVPPPPNERNRGKVADGPSDSEGSSSENSKGKNSSHTKKIILIAFAGVLVFIILVLAILLLLPKCARRREHANRVFKPHQVGADRGSRENALENGTPVLPPPGRSEKVQREPFKKAGEEPKVLHDLERLRRPAPISRQESQDIDFSMLMPPPPPPPPPPPPPPLDEKVTVMPIISPERPVKKTSPKRLPLTSVKHYSIASLQQYTESFAQENLIGSGMLGSVYRARLPNGKLFAVKKLDKRASEQQQDHEFIELVNNIDMIRHSNIVELVGYCAEHDQRLLVYEYCSNGTLQDGLHSDDEFKKKLSWNTRVSMALGAARALEYLHEVCEPPIIHRNFKSANVLLDDDLSVLVSDCGLAPLISSGSVSQLSGQLLAAYGYGAPEFDSGIYTWQSDVYSFGVVMLELLTGRMSYDRDRSRGEQFLVRWAIPQLHDIDALGKMVDPSLNGQYPAKSLSHFADIISRCVQSEPEFRPLMSEVVQDLLDMIRRER |
| HMMPanther: PTHR24420 | 1-767 | FAMILY NOT NAMED,FAMILY NOT NAMED | MAAKRSIYCLLLLPLLLSLLIWIPSISLAATNPDDVAAINGLFAALGAPVLPGWIASGGDPCGEAWQGIICNVSDIISITVNAANLQGELGDNLAKFTSIRGIDFSNNRIGGSIPSTLPVTLQHFFLSANQFTGSIPESLGTLSFLNDMSLNDNLLSGELPDVFQNLVGLINLDISSNNISGTLPPSMENLLTLTTLRVQNNQLSGTLDVLQGLPLQDLNIENNLFSGPIPDKLLSIPKFLHEGNPFNATMINSTSTAPSLSPSLSPTKPAPTRPFSGVPPPPNERNRGKVADGPSDSEGSSSENSKGKNSSHTKKIILIAFAGVLVFIILVLAILLLLPKCARRREHANRVFKPHQVGADRGSRENALENGTPVLPPPGRSEKVQREPFKKAGEEPKVLHDLERLRRPAPISRQESQDIDFSMLMPPPPPPPPPPPPPPLDEKVTVMPIISPERPVKKTSPKRLPLTSVKHYSIASLQQYTESFAQENLIGSGMLGSVYRARLPNGKLFAVKKLDKRASEQQQDHEFIELVNNIDMIRHSNIVELVGYCAEHDQRLLVYEYCSNGTLQDGLHSDDEFKKKLSWNTRVSMALGAARALEYLHEVCEPPIIHRNFKSANVLLDDDLSVLVSDCGLAPLISSGSVSQLSGQLLAAYGYGAPEFDSGIYTWQSDVYSFGVVMLELLTGRMSYDRDRSRGEQFLVRWAIPQLHDIDALGKMVDPSLNGQYPAKSLSHFADIISRCVQSEPEFRPLMSEVVQDLLDMIRRER |
| Seg: seg | 10-28 | seg | LLLLPLLLSLLIWIPSISL |
| superfamily: SSF52058 | 29-234 | L domain-like,LRR | AATNPDDVAAINGLFAALGAPVLPGWIASGGDPCGEAWQGIICNVSDIISITVNAANLQGELGDNLAKFTSIRGIDFSNNRIGGSIPSTLPVTLQHFFLSANQFTGSIPESLGTLSFLNDMSLNDNLLSGELPDVFQNLVGLINLDISSNNISGTLPPSMENLLTLTTLRVQNNQLSGTLDVLQGLPLQDLNIENNLFSGPIPDKL |
| HMMPfam: PF08263 IPR013210
|
33-72 | LRRNT_2 Leucine-rich repeat-containing N-terminal, type 2
|
PDDVAAINGLFAALGAPVLPGWIASGGDPCGEAWQGIICN |
| Gene3D: G3DSA:3.80.10.10 | 58-248 | no description | GGDPCGEAWQGIICNVSDIISITVNAANLQGELGDNLAKFTSIRGIDFSNNRIGGSIPSTLPVTLQHFFLSANQFTGSIPESLGTLSFLNDMSLNDNLLSGELPDVFQNLVGLINLDISSNNISGTLPPSMENLLTLTTLRVQNNQLSGTLDVLQGLPLQDLNIENNLFSGPIPDKLLSIPKFLHEGNPFN |
| Seg: seg | 143-157 | seg | LSFLNDMSLNDNLLS |
| HMMPfam: PF00560 IPR001611
|
170-191 | LRR_1 Leucine-rich repeat
|
LINLDISSNNISGTLPPSMENL |
| Seg: seg | 254-273 | seg | STSTAPSLSPSLSPTKPAPT |
| Seg: seg | 298-312 | seg | SEGSSSENSKGKNSS |
| Seg: seg | 325-339 | seg | VLVFIILVLAILLLL |
| Seg: seg | 427-440 | seg | PPPPPPPPPPPPPP |
| superfamily: SSF56112 IPR011009
|
455-759 | Protein kinase-like (PK-like) Protein kinase-like domain
|
RPVKKTSPKRLPLTSVKHYSIASLQQYTESFAQENLIGSGMLGSVYRARLPNGKLFAVKKLDKRASEQQQDHEFIELVNNIDMIRHSNIVELVGYCAEHDQRLLVYEYCSNGTLQDGLHSDDEFKKKLSWNTRVSMALGAARALEYLHEVCEPPIIHRNFKSANVLLDDDLSVLVSDCGLAPLISSGSVSQLSGQLLAAYGYGAPEFDSGIYTWQSDVYSFGVVMLELLTGRMSYDRDRSRGEQFLVRWAIPQLHDIDALGKMVDPSLNGQYPAKSLSHFADIISRCVQSEPEFRPLMSEVVQDL |
| Gene3D: G3DSA:3.30.200.20 | 469-549 | no description | SVKHYSIASLQQYTESFAQENLIGSGMLGSVYRARLPNGKLFAVKKLDKRASEQQQDHEFIELVNNIDMIRHSNIVELVGY |
| ProfileScan: PS50011 IPR000719
|
485-763 | PROTEIN_KINASE_DOM Protein kinase, catalytic domain
|
FAQENLIGSGMLGSVYRARLPNGKLFAVKKLDKRASEQQQDHEFIELVNNIDMIRHSNIVELVGYCAEHDQRLLVYEYCSNGTLQDGLHSDDEFKKKLSWNTRVSMALGAARALEYLHEVCEPPIIHRNFKSANVLLDDDLSVLVSDCGLAPLISSGSVSQLSGQLLAAYGYGAPEFDSGIYTWQSDVYSFGVVMLELLTGRMSYDRDRSRGEQFLVRWAIPQLHDIDALGKMVDPSLNGQYPAKSLSHFADIISRCVQSEPEFRPLMSEVVQDLLDMI |
| HMMSmart: SM00220 IPR002290
|
485-763 | Serine/Threonine protein kinases, catalytic Serine/threonine- / dual-specificity protein kinas
|
FAQENLIGSGMLGSVYRARLPNGKLFAVKKLDKRASEQQQDHEFIELVNNIDMIRHSNIVELVGYCAEHDQRLLVYEYCSNGTLQDGLHSDDEFKKKLSWNTRVSMALGAARALEYLHEVCEPPIIHRNFKSANVLLDDDLSVLVSDCGLAPLISSGSVSQLSGQLLAAYGYGAPEFDSGIYTWQSDVYSFGVVMLELLTGRMSYDRDRSRGEQFLVRWAIPQLHDIDALGKMVDPSLNGQYPAKSLSHFADIISRCVQSEPEFRPLMSEVVQDLLDMI |
| HMMSmart: SM00219 IPR020635
|
485-759 | Tyrosine kinase, catalytic domain Tyrosine-protein kinase, catalytic domain
|
FAQENLIGSGMLGSVYRARLPNGKLFAVKKLDKRASEQQQDHEFIELVNNIDMIRHSNIVELVGYCAEHDQRLLVYEYCSNGTLQDGLHSDDEFKKKLSWNTRVSMALGAARALEYLHEVCEPPIIHRNFKSANVLLDDDLSVLVSDCGLAPLISSGSVSQLSGQLLAAYGYGAPEFDSGIYTWQSDVYSFGVVMLELLTGRMSYDRDRSRGEQFLVRWAIPQLHDIDALGKMVDPSLNGQYPAKSLSHFADIISRCVQSEPEFRPLMSEVVQDL |
| HMMPfam: PF07714 IPR001245
|
488-759 | Pkinase_Tyr Serine-threonine/tyrosine-protein kinase
|
ENLIGSGMLGSVYRARLPNGKLFAVKKLDKRASEQQQDHEFIELVNNIDMIRHSNIVELVGYCAEHDQRLLVYEYCSNGTLQDGLHSDDEFKKKLSWNTRVSMALGAARALEYLHEVCEPPIIHRNFKSANVLLDDDLSVLVSDCGLAPLISSGSVSQLSGQLLAAYGYGAPEFDSGIYTWQSDVYSFGVVMLELLTGRMSYDRDRSRGEQFLVRWAIPQLHDIDALGKMVDPSLNGQYPAKSLSHFADIISRCVQSEPEFRPLMSEVVQDL |
| Gene3D: G3DSA:1.10.510.10 | 550-759 | no description | CAEHDQRLLVYEYCSNGTLQDGLHSDDEFKKKLSWNTRVSMALGAARALEYLHEVCEPPIIHRNFKSANVLLDDDLSVLVSDCGLAPLISSGSVSQLSGQLLAAYGYGAPEFDSGIYTWQSDVYSFGVVMLELLTGRMSYDRDRSRGEQFLVRWAIPQLHDIDALGKMVDPSLNGQYPAKSLSHFADIISRCVQSEPEFRPLMSEVVQDL |
| Seg: seg | 619-631 | seg | VLLDDDLSVLVSD |
| Seg: seg | 637-651 | seg | LISSGSVSQLSGQLL |
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