PRGDB00066202 (At.28604)

At.28604
Gene Type	Putative_R-Genes,_predicted_from_NCBI_UniGene
GenBank	79317903 (NM_001035960)
Gene Class	Unknown
Domain Type
Gene Species	Arabidopsis thaliana
	Comment?

Arabidopsis thaliana LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3) (LAG13) mRNA, complete cds

DNA Sequence

ACATTGAATCATCTGATTTGCAGAAAAAGGAGATCTCTTTATGTAAAAGTCTCTGAGAATTTTGGTTTAAAGAGAGGATTTTACGGAGATGGGTTTGTTGGAATCGGTGAAATCAATCAACTGGGAACATGAATCATCTCCGGTTTATCAGGATTTTCGAgttcttcctctcttcgctgtgttcttcccttcgattcgatttctcctcgatagattcgtcttcGAGAAATTGGCAAAATATTTGATCTATGGAAAACATAGACAGGATATGGGAGATGACACAACCGAGAGAAAGAAGAAGATCAGGAAATTCAAAGAATCGGCCTGGAAGTGTGTTTACTATCTATCAGCTGAGATTCTTGCTTTATCTGTGACTTACAATGAGCCTTGGTTTATGAACACTAAATACTTTTGGGTAGGGCCTGGAGATCAGACTTGGCCTGATCAACAAACAAAGTTAAAGTTGAAGCTTTTGTATATGTTTGTGGCTGGTTTCTATACATACTCCATCTTTGCTCTGGTTTTCTGGGAAACGAGGCGTTCTGATTTTGGAGTTTCAATGGGTCATCATATTGCCACTCTTATTCTTATTGTTCTCTCATACGTATGTAGCTTCTCCCGTGTTGGTTCTGTTGTTCTGGCACTTCACGATGCTAGTGATGTGTTTCTTGAGGTTGGGAAAATGTCTAAATATAGTGGAGCTGAAAGAATCGCAAGCTTTTCGTTCATTCTTTTCGTTTTGTCTTGGATCATTCTCCGCCTCATTTACTATCCCTTTTGGATCCTATGGAGTACAAGCTATGAAGTAGTTTTGGAGCTTGATAAAGACAAGCATCCAATCGAAGGACCAATTTACTACTACATGTTTAACACTCTCCTATATTGCTTGCTTGTTCTTCACATTTATTGGTGGGTTTTGATGTATCGGATGCTTGTGAAACAAATACAAGATAGAGGCAAGCTTAGTGAAGATGTCAGATCAGATTCTGAAGGCGAAGATGAGCACGAAGACTGATTTGATCACAAAGGTAGATAGAAATGTAAAAGCACGTTGTTCTCTCTTTACATATTCGCAGATTCTTTTGTTCTCTGTCTCTGTGATTCTGATCGCTAATGGGTGTTTAAGAGTGGAGGAGACTGAGTCATCAATCTCTAACATTGGACCAACTCATGGAACATAACTGATTCAGGAGACATGAAACTGTAGTTGTATTGAATTGTAGTCTGAACAAATTCCAGATCTTCTTGTATTGTATTCATTTCTTGTTTTGGATCACTCACCATTCATGATATATATCAATGTTGATATAACTCATCAATCTCTAACATTGGACCAACTCATGGAACATAACTGATTCAGGAGACATGAAACTGTAGTTGTATTGAATTGTAGTCTGAACAAATTTTG

Protein sequences

Name	Description	Sequence
At.28604	translated coding region predicted by ESTScan from UniGene At.28604	MGLLESVKSINWEHESSPVYQDFRVLPLFAVFFPSIRFLLDRFVFEKLAKYLIYGKHRQDMGDDTTERKKKIRKFKESAWKCVYYLSAEILALSVTYNEPWFMNTKYFWVGPGDQTWPDQQTKLKLKLLYMFVAGFYTYSIFALVFWETRRSDFGVSMGHHIATLILIVLSYVCSFSRVGSVVLALHDASDVFLEVGKMSKYSGAERIASFSFILFVLSWIILRLIYYPFWILWSTSYEVVLELDKDKHPIEGPIYYYMFNTLLYCLLVLHIYWWVLMYRMLVKQIQDRGKLSEDVRSDSEGEDEHED

Domains

Domain	Start-End	Description	Sequence
HMMPIR: PIRSF005225 IPR016439	1-307	Longevity assurance proteins LAG1/LAC1 Longevity assurance, LAG1/LAC1	MGLLESVKSINWEHESSPVYQDFRVLPLFAVFFPSIRFLLDRFVFEKLAKYLIYGKHRQDMGDDTTERKKKIRKFKESAWKCVYYLSAEILALSVTYNEPWFMNTKYFWVGPGDQTWPDQQTKLKLKLLYMFVAGFYTYSIFALVFWETRRSDFGVSMGHHIATLILIVLSYVCSFSRVGSVVLALHDASDVFLEVGKMSKYSGAERIASFSFILFVLSWIILRLIYYPFWILWSTSYEVVLELDKDKHPIEGPIYYYMFNTLLYCLLVLHIYWWVLMYRMLVKQIQDRGKLSEDVRSDSEGEDEHE
HMMPanther: PTHR12560	12-308	FAMILY NOT NAMED,LONGEVITY ASSURANCE FACTOR 1 (LAG1)	WEHESSPVYQDFRVLPLFAVFFPSIRFLLDRFVFEKLAKYLIYGKHRQDMGDDTTERKKKIRKFKESAWKCVYYLSAEILALSVTYNEPWFMNTKYFWVGPGDQTWPDQQTKLKLKLLYMFVAGFYTYSIFALVFWETRRSDFGVSMGHHIATLILIVLSYVCSFSRVGSVVLALHDASDVFLEVGKMSKYSGAERIASFSFILFVLSWIILRLIYYPFWILWSTSYEVVLELDKDKHPIEGPIYYYMFNTLLYCLLVLHIYWWVLMYRMLVKQIQDRGKLSEDVRSDSEGEDEHED
ProfileScan: PS50922 IPR006634	73-287	TLC TRAM/LAG1/CLN8 homology domain	RKFKESAWKCVYYLSAEILALSVTYNEPWFMNTKYFWVGPGDQTWPDQQTKLKLKLLYMFVAGFYTYSIFALVFWETRRSDFGVSMGHHIATLILIVLSYVCSFSRVGSVVLALHDASDVFLEVGKMSKYSGAERIASFSFILFVLSWIILRLIYYPFWILWSTSYEVVLELDKDKHPIEGPIYYYMFNTLLYCLLVLHIYWWVLMYRMLVKQIQ
HMMSmart: SM00724 IPR006634	73-287	TRAM, LAG1 and CLN8 homology domains. TRAM/LAG1/CLN8 homology domain	RKFKESAWKCVYYLSAEILALSVTYNEPWFMNTKYFWVGPGDQTWPDQQTKLKLKLLYMFVAGFYTYSIFALVFWETRRSDFGVSMGHHIATLILIVLSYVCSFSRVGSVVLALHDASDVFLEVGKMSKYSGAERIASFSFILFVLSWIILRLIYYPFWILWSTSYEVVLELDKDKHPIEGPIYYYMFNTLLYCLLVLHIYWWVLMYRMLVKQIQ
HMMPfam: PF03798 IPR006634	74-280	TRAM_LAG1_CLN8 TRAM/LAG1/CLN8 homology domain	KFKESAWKCVYYLSAEILALSVTYNEPWFMNTKYFWVGPGDQTWPDQQTKLKLKLLYMFVAGFYTYSIFALVFWETRRSDFGVSMGHHIATLILIVLSYVCSFSRVGSVVLALHDASDVFLEVGKMSKYSGAERIASFSFILFVLSWIILRLIYYPFWILWSTSYEVVLELDKDKHPIEGPIYYYMFNTLLYCLLVLHIYWWVLMYR

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Analyses

Blast

Blast matches against Reference R-Genes. Show