PRGDB00066251 (At.30045)
| At.30045 | |
|---|---|
| Gene Type | Putative_R-Genes,_predicted_from_NCBI_UniGene |
| GenBank | 79529692 (NM_123858) |
| Gene Class | TNL |
| Domain Type | NBS, TIR, LRR |
| Gene Species | Arabidopsis thaliana |
DNA Sequence
CTTCTTGTTTTTCCTCAGCAAATAGTTTCCTCAAAAACCATTACCTTCCATGGGCGCCTCCTTCTCCCTCTTTACCGACGTTGGACCGATCCCGCCTCAGTATCAAGTGTTCATCAACTTCCGAGGCGAAAAACTTCGTGATGGGTTCCTAGGGTTTCTTGTGGATGCTCTTTTAAAAGAGAATGTCAACGTTTTTATAGATGATCATGAGCTTAGAGGCAGAGATCTTGATCATCTCTTCAGTAGGATCGAGGAATCGAGAGTCGCATTGACAATCTTCTCCAAGAACTTCACCAACTCAAGATGGTGCTTAGATGAGCTTGCTAAGATCAAAGAATGTGTGGATCAAGAAAGTCTTACAGTGATTCCTATCTTCTTTAAGATGAAAACAGACGATGTGAAGAAACTGAAGGGGAATTTTGGAGACAACTTCCGGGACCTGAAGTTAACGCATCGCGGCGAGCCTGAAACTTATCGGAGATGGAAAGATGCTATACTGTATGTTTCTAAGAAAACTGGCTTGTCTTCGTCACGATACAGTCGCCAGAATGATTTGGTCAACACAATCGTCGAGGAGGTTAAGAAAGTTCTAAACGATATCGCCGAGATCGAACGACAAATTGCTGAAGAGAAGCGCAACCATTTGGCGGCAAGAACAGATGAATTGATTAGACTTGTTGTCCGGTTCCTAAGTCTGTTTCTTCtttttacaatagtttttggtccttatgttttaggccttctcacttttttctcttttcttGTGGGTCGTTTGATAATCAATCGAGCTGTGGAAAGTGAGTGGTGAATGGTAACGTTTGCGTTTCTATGAGAATACGTAAACGCAAAGAATCTGAGACTGA
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| At.30045 | translated coding region predicted by ESTScan from UniGene At.30045 | XFLFFLSKXFPQKPLPSMGASFSLFTDVGPIPPQYQVFINFRGEKLRDGFLGFLVDALLKENVNVFIDDHELRGRDLDHLFSRIEESRVALTIFSKNFTNSRWCLDELAKIKECVDQESLTVIPIFFKMKTDDVKKLKGNFGDNFRDLKLTHRGEPETYRRWKDAILYVSKKTGLSSSRYSRQNDLVNTIVEEVKKVLNDIAEIERQIAEEKRNHLAEEQMN |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| superfamily: SSF52200 IPR000157
|
23-175 | Toll/Interleukin receptor TIR domain Toll-Interleukin receptor
|
SLFTDVGPIPPQYQVFINFRGEKLRDGFLGFLVDALLKENVNVFIDDHELRGRDLDHLFSRIEESRVALTIFSKNFTNSRWCLDELAKIKECVDQESLTVIPIFFKMKTDDVKKLKGNFGDNFRDLKLTHRGEPETYRRWKDAILYVSKKTGL |
| ProfileScan: PS50104 IPR000157
|
33-172 | TIR Toll-Interleukin receptor
|
PQYQVFINFRGEKLRDGFLGFLVDALLKENVNVFIDDHELRGRDLDHLFSRIEESRVALTIFSKNFTNSRWCLDELAKIKECVDQESLTVIPIFFKMKTDDVKKLKGNFGDNFRDLKLTHRGEPETYRRWKDAILYVSKK |
| Gene3D: G3DSA:3.40.50.10140 | 34-158 | no description | QYQVFINFRGEKLRDGFLGFLVDALLKENVNVFIDDHELRGRDLDHLFSRIEESRVALTIFSKNFTNSRWCLDELAKIKECVDQESLTVIPIFFKMKTDDVKKLKGNFGDNFRDLKLTHRGEPET |
| HMMSmart: SM00255 IPR000157
|
34-172 | Toll Toll/interleukin-1 receptor homology (TIR) domain
|
QYQVFINFRGEKLRDGFLGFLVDALLKENVNVFIDDHELRGRDLDHLFSRIEESRVALTIFSKNFTNSRWCLDELAKIKECVDQESLTVIPIFFKMKTDDVKKLKGNFGDNFRDLKLTHRGEPETYRRWKDAILYVSKK |
| HMMPfam: PF01582 IPR000157
|
37-165 | TIR Toll-Interleukin receptor
|
VFINFRGEKLRDGFLGFLVDALLKENVNVFIDDHELRGRDLDHLFSRIEESRVALTIFSKNFTNSRWCLDELAKIKECVDQESLTVIPIFFKMKTDDVKKLKGNFGDNFRDLKLTHRGEPETYRRWKDA |
| HMMPanther: PTHR23155:SF66 | 44-193 | DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE,DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) | EKLRDGFLGFLVDALLKENVNVFIDDHELRGRDLDHLFSRIEESRVALTIFSKNFTNSRWCLDELAKIKECVDQESLTVIPIFFKMKTDDVKKLKGNFGDNFRDLKLTHRGEPETYRRWKDAILYVSKKTGLSSSRYSRQNDLVNTIVEE |
| HMMPanther: PTHR23155 | 44-193 | FAMILY NOT NAMED,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN | EKLRDGFLGFLVDALLKENVNVFIDDHELRGRDLDHLFSRIEESRVALTIFSKNFTNSRWCLDELAKIKECVDQESLTVIPIFFKMKTDDVKKLKGNFGDNFRDLKLTHRGEPETYRRWKDAILYVSKKTGLSSSRYSRQNDLVNTIVEE |
| Coil: coil | 187-222 | coiled-coil | VNTIVEEVKKVLNDIAEIERQIAEEKRNHLAEEQMN |
List of Contributions
There has not been any contribution yet.
