PRGDB00066618 (At.49590)
| At.49590 | |
|---|---|
| Gene Type | Putative_R-Genes,_predicted_from_NCBI_UniGene |
| GenBank | 79394814 (NM_111439) |
| Gene Class | RLP |
| Domain Type | Ser-Thr Kinase, LRR |
| Gene Species | Arabidopsis thaliana |
DNA Sequence
ATGAGTCTCATTCCTATTActttttattttctcttcttgttcttttctaattttcGAGGTGTTTTTGCTGTTCCTAATATACACTTATGTCATTTCGAACAAAGAGATGCACTTCTCGAGTTCAAGAACGAGTTTAAGATTAAGAAGCCTTGTTTTGGTTGTCCAAGTCCTCTGAAGACAAAGTCATGGGAGAATGGCAGCGACTGTTGTCATTGGGATGGTATTACTTGCGATGCTAAGACCGGGGAAGTAATCGAGATAGACCTTATGTGCAGCTGCCTCCATGGCTGGTTTCATTCCAACAGTAATCTTTCTATGCTTCAAAATTTCCATTTTCTAACCACTCTAGACCTTTCATATAATCATTTGAGTGGTCAAATCTCATCTTCTATTGGAAACCTTTCTCATCTCACCACTCTCGACCTTTCTGGAAATAACTTCAGTGGTTGGATTCCTTCTTCCCTTGGAAACCTTTTTCACCTCACCTCTCTCCACCTCTATGATAACAATTTTGGTGGTGAAATCCCATCTTCACTTGGAAATCTGTCGTATCTCACCTTTCTCGACCTATCTACTAACAATTTTGTTGGTGAAATCCCTTCTTCTTTTGGCAGTTTGAACCAATTGTCTATTTTACGTCTTGATAATAATAAGCTTAGTGGTAACCTCCCACTTGAAGTAATCAATCTTACAAAGTTGTCAGAGATATCACTCTCTCACAATCAGTTCACAGGCACGCTTCCTCCTAACATCACTTCACTCTCCATCTTGGAGTCCTTTTCGGCAAGTGGAAACAATTTCGTTGGAACTATCCCTTCCTCTCTCTTCACCATTCCTTCTATAACTCTTATTTTTTTGGACAATAACCAACTCAGCGGCACTCTTGAGTTTGGGAATATATCTTCACCGTCTAATTTACTAGTGTTACAACTTGGCGGTAACAACTTGAGAGGTCCAATCCCTACATCTATTTCCAGATTAGTCAACCTTAGGACACTTGACCTTTCCCATTTCAACATCCAAGGCCAAGTTGACTTTAATATCTTCTCGCATCTCAAGTTGCTAGGAAACCTTTACCTATCCCATTCCAACACCACCACTACAATTGACTTGAATGCAGTCTTATCATGTTTCAAGATGCTCATTTCATTGGATCTCTCAGGCAACCATGTTTTAGTCACAAACAAAAGTTCAGTTTCTGACCCTCCTTTGGGATTGATAGGCTCTTTGAACTTATCAGGATGCGGTATCACCGAGTTTCCAGATATCCTAAGAACGCAACGCCAAATGAGGACGCTAGACATTTCCAACAACAAAATCAAAGGCCAAGTGCCTAGCTGGTTACTATTACAGTTGGAGTACATGCATATCTCCAACAACAATTTCATCGGTTTCGAAAGATCAACGAAACTTGAAAAAACCGTAGTCCCAAAACCATCTATGAAGCACTTTTTTGGCTCCAATAACAATTTCAGTGGAAAGATTCCATCTTTCATATGCTCGTTGCGCTCTCTAATCATTCTCGATTTATCTAACAACAACTTCAGTGGTGCAATCCCTCCTTGTGTGGGAAAATTCAAGAGTACTCTTTCAGATCTTAACCTACGTCGGAATCGTCTTAGTGGAAGTCTTCCAAAGACTATAATAAAAAGTTTAAGGTCTCTTGATGTGAGTCATAACGAACTGGAGGGAAAGCTTCCAAGATCTTTGATCCACTTCTCTACTCTTGAAGTTTTGAATGTAGAAAGCAACAGAATCAACGACACGTTTCCGTTCTGGTTGAGTTCTCTAAAAAAGCTGCAAGTTCTTGTCTTACGCTCCAACGCATTTCACGGACGGATACACAAGACTCGGTTTCCTAAGTTGCGAATCATCGACATATCCCGTAATCACTTCAATGGGACATTGCCATCAGATTGCTTTGTGGAGTGGACTGGGATGCACTCACTTGAAAAAAATGAAGATCGGTTTAACGAAAAGTACATGGGATCAGGCTATTACCATGATTCAATGGTTCTGATGAATAAAGGCTTAGAGATGGAGCTGGTACGTATCCTAAAAATCTATACAGCTCTCGACTTCTCTGGAAACAAATTTGAAGGAGAGATTCCAAGATCCATCGGTCTATTGAAAGAACTTCATATCCTCAACTTGTCAAGCAATGGTTTCACCGGCCACATCCCATCATCTATGGGGAACCTGAGAGAGCTCGAGTCACTGGATGTTTCCCGAAACAAGCTTTCAGGAGAAATTCCACAAGAACTAGGGAACCTCTCGTACCTTGCGTACATGAACTTTTCTCATAACCAGCTTGTCGGTCAAGTACCAGGAGGCACCCAGTTTCGAACGCAATCCGCTTCGTCTTTTGAAGAAAACCTTGGACTTTGTGGTCGTCCTCTCGAAGAATGTAGAGTTGTCCATGAGCCGACGCCTTCAGGGGAATCAGAAACATTGGAATCAGAACAAGTCTTGAGTTGGATTGCAGCTGCCATAGGGTTCACACCTGGTATCGTGCTTGGATTGACCATTGGGCACATCGTGCTTTCCTCCAAACCGCGTTGGTTCTTCAAGGTGTTGTACATCAACAACAGTCGTAGACGCAGACGAACTCGTTCTGAGAAATCCTAAATCACGGAATTGAAGACGTTCGTTCGAGAAGAAGAAGATGGAGGAATAAAGCAGGAGGATCGTTATGTGAATTCGAAATTGGGCTGATAAAATGGGCTTGCTTACATAATTTAGGCCCATTAATGAAAGACGTCGGCGAAGAAAGCAACGTTGTACGGAGAAAGTAATAATTACAAGAAGAAGACGAAGACATTCATGGACATTAATCATGGAAGGTAGCGACTAGCGAGCGCATGCTTAGTGGAGAGATTCCTGTAAATTTCTATCttttttttgtatttttGTATTAGATGTTGACATATTGGAATTGATATGTCGGTTACTGTAATACCAAATTCTCAACATGGTTTAACCACTACATATAGAAATTGTTCAAAACCGGTTGTGTAATGAAAATTCACGTAATTTTTGCTAT
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| At.49590 | translated coding region predicted by ESTScan from UniGene At.49590 | MSLIPITFYFLFLFFSNFRGVFAVPNIHLCHFEQRDALLEFKNEFKIKKPCFGCPSPLKTKSWENGSDCCHWDGITCDAKTGEVIEIDLMCSCLHGWFHSNSNLSMLQNFHFLTTLDLSYNHLSGQISSSIGNLSHLTTLDLSGNNFSGWIPSSLGNLFHLTSLHLYDNNFGGEIPSSLGNLSYLTFLDLSTNNFVGEIPSSFGSLNQLSILRLDNNKLSGNLPLEVINLTKLSEISLSHNQFTGTLPPNITSLSILESFSASGNNFVGTIPSSLFTIPSITLIFLDNNQLSGTLEFGNISSPSNLLVLQLGGNNLRGPIPTSISRLVNLRTLDLSHFNIQGQVDFNIFSHLKLLGNLYLSHSNTTTTIDLNAVLSCFKMLISLDLSGNHVLVTNKSSVSDPPLGLIGSLNLSGCGITEFPDILRTQRQMRTLDISNNKIKGQVPSWLLLQLEYMHISNNNFIGFERSTKLEKTVVPKPSMKHFFGSNNNFSGKIPSFICSLRSLIILDLSNNNFSGAIPPCVGKFKSTLSDLNLRRNRLSGSLPKTIIKSLRSLDVSHNELEGKLPRSLIHFSTLEVLNVESNRINDTFPFWLSSLKKLQVLVLRSNAFHGRIHKTRFPKLRIIDISRNHFNGTLPSDCFVEWTGMHSLEKNEDRFNEKYMGSGYYHDSMVLMNKGLEMELVRILKIYTALDFSGNKFEGEIPRSIGLLKELHILNLSSNGFTGHIPSSMGNLRELESLDVSRNKLSGEIPQELGNLSYLAYMNFSHNQLVGQVPGGTQFRTQSASSFEENLGLCGRPLEECRVVHEPTPSGESETLESEQVLSWIAAAIGFTPGIVLGLTIGHIVLSSKPRWFFKVLYINNSRRRRRTRSEKS |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| HMMPanther: PTHR24420 | 2-848 | PTHR24420,FAMILY NOT NAMED | SLIPITFYFLFLFFSNFRGVFAVPNIHLCHFEQRDALLEFKNEFKIKKPCFGCPSPLKTKSWENGSDCCHWDGITCDAKTGEVIEIDLMCSCLHGWFHSNSNLSMLQNFHFLTTLDLSYNHLSGQISSSIGNLSHLTTLDLSGNNFSGWIPSSLGNLFHLTSLHLYDNNFGGEIPSSLGNLSYLTFLDLSTNNFVGEIPSSFGSLNQLSILRLDNNKLSGNLPLEVINLTKLSEISLSHNQFTGTLPPNITSLSILESFSASGNNFVGTIPSSLFTIPSITLIFLDNNQLSGTLEFGNISSPSNLLVLQLGGNNLRGPIPTSISRLVNLRTLDLSHFNIQGQVDFNIFSHLKLLGNLYLSHSNTTTTIDLNAVLSCFKMLISLDLSGNHVLVTNKSSVSDPPLGLIGSLNLSGCGITEFPDILRTQRQMRTLDISNNKIKGQVPSWLLLQLEYMHISNNNFIGFERSTKLEKTVVPKPSMKHFFGSNNNFSGKIPSFICSLRSLIILDLSNNNFSGAIPPCVGKFKSTLSDLNLRRNRLSGSLPKTIIKSLRSLDVSHNELEGKLPRSLIHFSTLEVLNVESNRINDTFPFWLSSLKKLQVLVLRSNAFHGRIHKTRFPKLRIIDISRNHFNGTLPSDCFVEWTGMHSLEKNEDRFNEKYMGSGYYHDSMVLMNKGLEMELVRILKIYTALDFSGNKFEGEIPRSIGLLKELHILNLSSNGFTGHIPSSMGNLRELESLDVSRNKLSGEIPQELGNLSYLAYMNFSHNQLVGQVPGGTQFRTQSASSFEENLGLCGRPLEECRVVHEPTPSGESETLESEQVLSWIAAAIGFTPGIVLGLTIGHIVL |
| HMMPanther: PTHR24420:SF910 | 2-848 | PTHR24420:SF910 | SLIPITFYFLFLFFSNFRGVFAVPNIHLCHFEQRDALLEFKNEFKIKKPCFGCPSPLKTKSWENGSDCCHWDGITCDAKTGEVIEIDLMCSCLHGWFHSNSNLSMLQNFHFLTTLDLSYNHLSGQISSSIGNLSHLTTLDLSGNNFSGWIPSSLGNLFHLTSLHLYDNNFGGEIPSSLGNLSYLTFLDLSTNNFVGEIPSSFGSLNQLSILRLDNNKLSGNLPLEVINLTKLSEISLSHNQFTGTLPPNITSLSILESFSASGNNFVGTIPSSLFTIPSITLIFLDNNQLSGTLEFGNISSPSNLLVLQLGGNNLRGPIPTSISRLVNLRTLDLSHFNIQGQVDFNIFSHLKLLGNLYLSHSNTTTTIDLNAVLSCFKMLISLDLSGNHVLVTNKSSVSDPPLGLIGSLNLSGCGITEFPDILRTQRQMRTLDISNNKIKGQVPSWLLLQLEYMHISNNNFIGFERSTKLEKTVVPKPSMKHFFGSNNNFSGKIPSFICSLRSLIILDLSNNNFSGAIPPCVGKFKSTLSDLNLRRNRLSGSLPKTIIKSLRSLDVSHNELEGKLPRSLIHFSTLEVLNVESNRINDTFPFWLSSLKKLQVLVLRSNAFHGRIHKTRFPKLRIIDISRNHFNGTLPSDCFVEWTGMHSLEKNEDRFNEKYMGSGYYHDSMVLMNKGLEMELVRILKIYTALDFSGNKFEGEIPRSIGLLKELHILNLSSNGFTGHIPSSMGNLRELESLDVSRNKLSGEIPQELGNLSYLAYMNFSHNQLVGQVPGGTQFRTQSASSFEENLGLCGRPLEECRVVHEPTPSGESETLESEQVLSWIAAAIGFTPGIVLGLTIGHIVL |
| superfamily: SSF52058 | 28-342 | SSF52058,LRR | HLCHFEQRDALLEFKNEFKIKKPCFGCPSPLKTKSWENGSDCCHWDGITCDAKTGEVIEIDLMCSCLHGWFHSNSNLSMLQNFHFLTTLDLSYNHLSGQISSSIGNLSHLTTLDLSGNNFSGWIPSSLGNLFHLTSLHLYDNNFGGEIPSSLGNLSYLTFLDLSTNNFVGEIPSSFGSLNQLSILRLDNNKLSGNLPLEVINLTKLSEISLSHNQFTGTLPPNITSLSILESFSASGNNFVGTIPSSLFTIPSITLIFLDNNQLSGTLEFGNISSPSNLLVLQLGGNNLRGPIPTSISRLVNLRTLDLSHFNIQG |
| HMMPfam: PF08263 IPR013210
|
33-78 | LRRNT_2 Leucine-rich repeat-containing N-terminal domain,
|
EQRDALLEFKNEFKIKKPCFGCPSPLKTKSWENGSDCCHWDGITCD |
| Gene3D: G3DSA:3.80.10.10 | 33-283 | G3DSA:3.80.10.10 | EQRDALLEFKNEFKIKKPCFGCPSPLKTKSWENGSDCCHWDGITCDAKTGEVIEIDLMCSCLHGWFHSNSNLSMLQNFHFLTTLDLSYNHLSGQISSSIGNLSHLTTLDLSGNNFSGWIPSSLGNLFHLTSLHLYDNNFGGEIPSSLGNLSYLTFLDLSTNNFVGEIPSSFGSLNQLSILRLDNNKLSGNLPLEVINLTKLSEISLSHNQFTGTLPPNITSLSILESFSASGNNFVGTIPSSLFTIPSITL |
| FPrintScan: PR00019 | 113-126 | LEURICHRPT,Leucine-rich repeat signature | LTTLDLSYNHLSGQ |
| HMMPfam: PF12799 | 113-150 | LRR_4,Leucine Rich repeats (2 copies) | LTTLDLSYNHLSGQISSSIGNLSHLTTLDLSGNNFSGW |
| HMMPfam: PF13516 | 160-181 | LRR_6,Leucine Rich repeat | HLTSLHLYDNNFGGEIPSSLGN |
| HMMPfam: PF00560 IPR001611
|
185-206 | LRR_1 Leucine-rich repeat
|
LTFLDLSTNNFVGEIPSSFGSL |
| HMMPfam: PF00560 IPR001611
|
232-254 | LRR_1 Leucine-rich repeat
|
KLSEISLSHNQFTGTLPPNITSL |
| Gene3D: G3DSA:3.80.10.10 | 284-392 | G3DSA:3.80.10.10 | IFLDNNQLSGTLEFGNISSPSNLLVLQLGGNNLRGPIPTSISRLVNLRTLDLSHFNIQGQVDFNIFSHLKLLGNLYLSHSNTTTTIDLNAVLSCFKMLISLDLSGNHVL |
| superfamily: SSF52047 | 409-772 | SSF52047,LRR | SLNLSGCGITEFPDILRTQRQMRTLDISNNKIKGQVPSWLLLQLEYMHISNNNFIGFERSTKLEKTVVPKPSMKHFFGSNNNFSGKIPSFICSLRSLIILDLSNNNFSGAIPPCVGKFKSTLSDLNLRRNRLSGSLPKTIIKSLRSLDVSHNELEGKLPRSLIHFSTLEVLNVESNRINDTFPFWLSSLKKLQVLVLRSNAFHGRIHKTRFPKLRIIDISRNHFNGTLPSDCFVEWTGMHSLEKNEDRFNEKYMGSGYYHDSMVLMNKGLEMELVRILKIYTALDFSGNKFEGEIPRSIGLLKELHILNLSSNGFTGHIPSSMGNLRELESLDVSRNKLSGEIPQELGNLSYLAYMNFSHNQLV |
| Gene3D: G3DSA:3.80.10.10 | 410-538 | G3DSA:3.80.10.10 | LNLSGCGITEFPDILRTQRQMRTLDISNNKIKGQVPSWLLLQLEYMHISNNNFIGFERSTKLEKTVVPKPSMKHFFGSNNNFSGKIPSFICSLRSLIILDLSNNNFSGAIPPCVGKFKSTLSDLNLRRN |
| HMMPfam: PF00560 IPR001611
|
504-521 | LRR_1 Leucine-rich repeat
|
SLIILDLSNNNFSGAIPP |
| Gene3D: G3DSA:3.80.10.10 | 539-652 | G3DSA:3.80.10.10 | RLSGSLPKTIIKSLRSLDVSHNELEGKLPRSLIHFSTLEVLNVESNRINDTFPFWLSSLKKLQVLVLRSNAFHGRIHKTRFPKLRIIDISRNHFNGTLPSDCFVEWTGMHSLEK |
| HMMPfam: PF13855 | 551-609 | LRR_8,Leucine rich repeat | SLRSLDVSHNELEGKLPRSLIHFSTLEVLNVESNRINDTFPFWLSSLKKLQVLVLRSNA |
| Gene3D: G3DSA:3.80.10.10 | 692-802 | G3DSA:3.80.10.10 | LDFSGNKFEGEIPRSIGLLKELHILNLSSNGFTGHIPSSMGNLRELESLDVSRNKLSGEIPQELGNLSYLAYMNFSHNQLVGQVPGGTQFRTQSASSFEENLGLCGRPLEE |
| HMMPfam: PF00560 IPR001611
|
713-734 | LRR_1 Leucine-rich repeat
|
LHILNLSSNGFTGHIPSSMGNL |
| FPrintScan: PR00019 | 734-747 | LEURICHRPT,Leucine-rich repeat signature | LRELESLDVSRNKL |
| HMMPfam: PF00560 IPR001611
|
737-758 | LRR_1 Leucine-rich repeat
|
LESLDVSRNKLSGEIPQELGNL |
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