PRGDB00066891 (At.55387)

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At.55387
Gene Type Putative_R-Genes,_predicted_from_NCBI_UniGene
GenBank 18422530 (NM_123893)
Gene Class TNL
Domain Type NBS, TIR, LRR, Others
Gene Species Arabidopsis thaliana

Comment?

Arabidopsis thaliana RPS4 (RESISTANT TO P. SYRINGAE 4); receptor (RPS4) mRNA, complete cds

DNA Sequence

ATGGAGACATCATCTATTTCCACTGTGGAAGACAAGCCACCGCAGCATCAGGTGTTCATCAATTTCCGTGGGGCAGATTTGCGCCGGAGATTCGTCAGCCATCTCGTAACGGCCTTGAAATTGAACAACATCAACGTCTTTATCGACGACTATGAAGACAGAGGTCAACCTCTAGATGTACTGCTGAAGAGGATAGAGGAGTCCAAAATCGTTTTGGCTATCTTCTCCGGCAACTACACCGAGTCAGTCTGGTGCGTGAGAGAGCTGGAGAAGATCAAAGATTGTACGGATGAAGGAACACTCGTTGCGATTCCAATCTTCTACAAGCTGGAGCCATCCACCGTTAGAGATTTGAAAGGAAAGTTCGGTGATAGATTTAGGAGTATGGCTAAGGGTGATGAGAGGAAAAAGAAATGGAAGGAAGCTTTTAACTTGATTCCTAACATTATGGGCATCATCATTGACAAGAAAAGTGTGGAGAGTGAGAAAGTCAATGAAATTGTGAAGGCGGTGAAGACAGCGTTGACCGGAATACCACCGGAGGGAAGTCACAACGCCGTCGTGGGTGCTTTAGGTAATAGCAACGCTGGAACTTCCTCAGGAGACAAAAAGCATGAGACTTTTGGAAACGAACAACGGTTAAAAGATTTGGAAGAGAAGTTGGATCGTGATAAATACAAGGGAACTCGTATCATTGGAGTTGTTGGGATGCCCGGAATTGGTAAAACCACACTCCTGAAAGAGCTATATAAGACGTGGCAGGGCAAGTTTTCGAGGCATGCGCTAATCGATCAAATCCGTGTAAAGTCCAAGCACTTGGAGTTGGATCGCTTGCCTCAAATGCTCTTAGGCGAGTTGTCCAAGTTAAACCATCCTCACGTAGACAATCTCAAAGATCCATACAGTCAACTGCATGAACGCAAAGTGCTTGTTGTACTTGATGATGTTAGTAAAAGGGAACAAATAGATGCTCTTCGTGAGATACTAGACTGGATTAAGGAGGGTAAGGAGGGAAGCAGGGTTGTCATTGCAACAAGCGACATGTCCTTAACAAATGGTTTGGTTGATGATACTTACATGGTTCAAAATTTGAACCACAGAGATAGCTTACAACTATTTCACTATCATGCCTTTATTGATGATCAAGCCAATCCTCAAAAGAAAGATTTCATGAAGCTGTCAGAAGGGTTTGTACATTACGCCAGAGGCCATCCACTAGCCCTCAAAGTATTGGGTGGAGAGCTTAATAAGAAAAGTATGGATCATTGGAATTCGAAAATGAAGAAACTTGCACAGAGCCCCAGCCCTAATATTGTCAGTGTCTTCCAAGTGAGTTATGATGAATTGACTACAGCGCAGAAAGATGCATTTCTCGACATAGCCTGTTTCAGATCACAGGACAAGGATTATGTAGAAAGTCTACTGGCTTCATCTGACCTTGGTTCGGCTGAAGCAATGAGTGCAGTCAAATCTCTCACGGATAAGTTCCTGATTAATACTTGTGATGGCCGAGTGGAGATGCATGATCTATTATATAAATTTTCAAGGGAAGTTGATCTGAAGGCATCTAATCAGGATGGTAGCAGACAACGGAGGCTGTGGCTCCATCAACACATAATCAAGGGAGGCATAATCAATGTATTGCAAAATAAAATGAAAGCTGCCAATGTTAGAGGTATTTTCCTAGACTTGTCTGAAGTGGAAGACGAAACGAGCTTAGACCGCGACCACTTCATAAATATGGGAAATCTCCGGTATCTCAAGTTCTACAATTCCCATTGTCCACAGGAATGTAAAACCAACAATAAAATCAACATCCCTGATAAACTTAAGCTACCATTGAAAGAAGTTCGATGCCTCCACTGGCTGAAATTCCCATTGGAGACACTTCCAAACGATTTCAACCCAATTAATCTTGTCGACCTTAAGCTGCCCTACAGTGAAATGGAACAACTTTGGGAGGGTGACAAGGACACACCATGCTTAAGGTGGGTCGATCTCAATCACTCAAGTAAGTTGTGCAGCTTGTCAGGGTTATCAAAAGCTGAAAAGCTTCAAAGGTTGAACCTTGAAGGTTGCACAACACTGAAAGCGTTTCCACATGATATGaaaaaaatgaaaaTGCTTGCTTTCTTGAATCTGAAGGGGTGTACAAGTCTCGAATCTCTTCCAGAGATGAATTTGATTTCTCTGAAAACACTTACTCTCAGCGGCTGCTCAACTTTTAAGGAATTTCCGTTGATTTCAGATAATATAGAAACTCTATACTTAGATGGCACAGCAATAAGTCAGCTTCCTATGAACATGGAGAAGCTTCAGAGACTTGTTGTATTGAATATGAAAGACTGCAAAATGCTAGAGGAAATTCCAGGCCGTGTTGGTGAGCTGAAAGCTCTTCAAGAACTGATACTCTCTGATTGTTTAAATCTCAAGATTTTCCCAGAAATCGACATTAGCTTTTTAAACATTTTACTTTTGGATGGGACAGCCATTGAAGTGATGCCACAATTACCCTCAGTGCAGTATTTGTGCTTAAGCAGAAATGCTAAGATCAGCTGCCTTCCTGTTGGAATCAGTCAGCTTTCTCAACTTAAATGGCTGGACCTGAAGTATTGTACGAGTCTTACATCAGTTCCAGAGTTTCCACCAAATCTTCAGTGCTTAGATGCACACGGCTGTAGTTCGCTGAAGACAGTTTCAAAGCCTTTGGCCCGTATCATGCCAACTGAACAGAATCATTCCACATTCATTTTCACCAACTGTGAGAACCTGGAACAAGCTGCAAAGGAGGAAATCACATCGTATGCTCAAAGGAAATGCCAGCTGTTATCATATGCTCGGAAACGCTACAATGGGGGTCTTGTTTCAGAATCTTTGTTCAGCACTTGCTTTCCTGGATGTGAAGTGCCTTCTTGGTTTTGTCATGAAACAGTTGGATCTGAGTTAGAAGTAAAACTCCTCCCACATTGGCATGACAAGAAGCTTGCCGGGATTGCTCTATGTGCTGTAGTCTCATGTCTTGACCCCCAAGATCAAGTCAGCCGCTTGTCAGTGACCTGCACCTTTAAAGTAAAAGATGAAGACAAGTCTTGGGTCGCATATACTTGTCCAGTAGGAAGTTGGACCAGACATGGAGGCGGGAAAGATAAGATTGAGCTAGACCATGTCTTCATTGGATACACCAGTTGCCCACATACTATAAAATGTCATGAAGAAGGTAACTCAGATGAATGCAATCCTACCGAAGCCTCTCTTAAATTTACTGTGACAGGAGGTACAAGTGAGAATGGAAAATACAAGGTGTTGAAGTGTGGTTTAAGTTTGGTGTATGCTAAGGATAAAGACAAAAATAGTGCTCTTGAAACAAAGTACGATATGCTTATTGGAAAGAGCTTTCAAGAAACTTCAGAAGGGGTTGATGGAAGGGTAAAGAAAACGAAAGGAAAGTACGTTATGCCTGTTGAAAAGAACTTTCAAGAAACTACAGAAGGGGTTGATGGAAGAGTAAATaaaaagaaaaaaaCAAGAATGGATAATGGACGGCCAAAGAAGAAGCAGAGATCAGGAAGAGATGATAATCAAACTAGGATGCAAGTGGAACTCCAAGAAGGAAATATAAATTCAGTGATCATGCACACGGTTAAGAATTTCTGA


Protein sequences

Name Description Sequence
At.55387 translated coding region predicted by ESTScan from UniGene At.55387

METSSISTVEDKPPQHQVFINFRGADLRRRFVSHLVTALKLNNINVFIDDYEDRGQPLDVLLKRIEESKIVLAIFSGNYTESVWCVRELEKIKDCTDEGTLVAIPIFYKLEPSTVRDLKGKFGDRFRSMAKGDERKKKWKEAFNLIPNIMGIIIDKKSVESEKVNEIVKAVKTALTGIPPEGSHNAVVGALGNSNAGTSSGDKKHETFGNEQRLKDLEEKLDRDKYKGTRIIGVVGMPGIGKTTLLKELYKTWQGKFSRHALIDQIRVKSKHLELDRLPQMLLGELSKLNHPHVDNLKDPYSQLHERKVLVVLDDVSKREQIDALREILDWIKEGKEGSRVVIATSDMSLTNGLVDDTYMVQNLNHRDSLQLFHYHAFIDDQANPQKKDFMKLSEGFVHYARGHPLALKVLGGELNKKSMDHWNSKMKKLAQSPSPNIVSVFQVSYDELTTAQKDAFLDIACFRSQDKDYVESLLASSDLGSAEAMSAVKSLTDKFLINTCDGRVEMHDLLYKFSREVDLKASNQDGSRQRRLWLHQHIIKGGIINVLQNKMKAANVRGIFLDLSEVEDETSLDRDHFINMGNLRYLKFYNSHCPQECKTNNKINIPDKLKLPLKEVRCLHWLKFPLETLPNDFNPINLVDLKLPYSEMEQLWEGDKDTPCLRWVDLNHSSKLCSLSGLSKAEKLQRLNLEGCTTLKAFPHDMKKMKMLAFLNLKGCTSLESLPEMNLISLKTLTLSGCSTFKEFPLISDNIETLYLDGTAISQLPMNMEKLQRLVVLNMKDCKMLEEIPGRVGELKALQELILSDCLNLKIFPEIDISFLNILLLDGTAIEVMPQLPSVQYLCLSRNAKISCLPVGISQLSQLKWLDLKYCTSLTSVPEFPPNLQCLDAHGCSSLKTVSKPLARIMPTEQNHSTFIFTNCENLEQAAKEEITSYAQRKCQLLSYARKRYNGGLVSESLFSTCFPGCEVPSWFCHETVGSELEVKLLPHWHDKKLAGIALCAVVSCLDPQDQVSRLSVTCTFKVKDEDKSWVAYTCPVGSWTRHGGGKDKIELDHVFIGYTSCPHTIKCHEEGNSDECNPTEASLKFTVTGGTSENGKYKVLKCGLSLVYAKDKDKNSALETKYDMLIGKSFQETSEGVDGRVKKTKGKYVMPVEKNFQETTEGVDGRVNKKKKTRMDNGRPKKKQRSGRDDNQTRMQVELQEGNINSVIMHTVKNF

Domains

Domain Start-End Description Sequence

superfamily: SSF52200
IPR000157
4-152 TIR
Toll-Interleukin receptor

SSISTVEDKPPQHQVFINFRGADLRRRFVSHLVTALKLNNINVFIDDYEDRGQPLDVLLKRIEESKIVLAIFSGNYTESVWCVRELEKIKDCTDEGTLVAIPIFYKLEPSTVRDLKGKFGDRFRSMAKGDERKKKWKEAFNLIPNIMGI

ProfileScan: PS50104
IPR000157
14-149 TIR
Toll-Interleukin receptor

PQHQVFINFRGADLRRRFVSHLVTALKLNNINVFIDDYEDRGQPLDVLLKRIEESKIVLAIFSGNYTESVWCVRELEKIKDCTDEGTLVAIPIFYKLEPSTVRDLKGKFGDRFRSMAKGDERKKKWKEAFNLIPNI

Gene3D: G3DSA:3.40.50.10140
14-141 G3DSA:3.40.50.10140

PQHQVFINFRGADLRRRFVSHLVTALKLNNINVFIDDYEDRGQPLDVLLKRIEESKIVLAIFSGNYTESVWCVRELEKIKDCTDEGTLVAIPIFYKLEPSTVRDLKGKFGDRFRSMAKGDERKKKWKE

HMMSmart: SM00255
IPR000157
15-149 TIR
Toll-Interleukin receptor

QHQVFINFRGADLRRRFVSHLVTALKLNNINVFIDDYEDRGQPLDVLLKRIEESKIVLAIFSGNYTESVWCVRELEKIKDCTDEGTLVAIPIFYKLEPSTVRDLKGKFGDRFRSMAKGDERKKKWKEAFNLIPNI

HMMPfam: PF01582
IPR000157
18-142 TIR
Toll-Interleukin receptor

VFINFRGADLRRRFVSHLVTALKLNNINVFIDDYEDRGQPLDVLLKRIEESKIVLAIFSGNYTESVWCVRELEKIKDCTDEGTLVAIPIFYKLEPSTVRDLKGKFGDRFRSMAKGDERKKKWKEA

HMMPanther: PTHR23155:SF48
25-939 PTHR23155:SF48,SUBFAMILY NOT NAMED

ADLRRRFVSHLVTALKLNNINVFIDDYEDRGQPLDVLLKRIEESKIVLAIFSGNYTESVWCVRELEKIKDCTDEGTLVAIPIFYKLEPSTVRDLKGKFGDRFRSMAKGDERKKKWKEAFNLIPNIMGIIIDKKSVESEKVNEIVKAVKTALTGIPPEGSHNAVVGALGNSNAGTSSGDKKHETFGNEQRLKDLEEKLDRDKYKGTRIIGVVGMPGIGKTTLLKELYKTWQGKFSRHALIDQIRVKSKHLELDRLPQMLLGELSKLNHPHVDNLKDPYSQLHERKVLVVLDDVSKREQIDALREILDWIKEGKEGSRVVIATSDMSLTNGLVDDTYMVQNLNHRDSLQLFHYHAFIDDQANPQKKDFMKLSEGFVHYARGHPLALKVLGGELNKKSMDHWNSKMKKLAQSPSPNIVSVFQVSYDELTTAQKDAFLDIACFRSQDKDYVESLLASSDLGSAEAMSAVKSLTDKFLINTCDGRVEMHDLLYKFSREVDLKASNQDGSRQRRLWLHQHIIKGGIINVLQNKMKAANVRGIFLDLSEVEDETSLDRDHFINMGNLRYLKFYNSHCPQECKTNNKINIPDKLKLPLKEVRCLHWLKFPLETLPNDFNPINLVDLKLPYSEMEQLWEGDKDTPCLRWVDLNHSSKLCSLSGLSKAEKLQRLNLEGCTTLKAFPHDMKKMKMLAFLNLKGCTSLESLPEMNLISLKTLTLSGCSTFKEFPLISDNIETLYLDGTAISQLPMNMEKLQRLVVLNMKDCKMLEEIPGRVGELKALQELILSDCLNLKIFPEIDISFLNILLLDGTAIEVMPQLPSVQYLCLSRNAKISCLPVGISQLSQLKWLDLKYCTSLTSVPEFPPNLQCLDAHGCSSLKTVSKPLARIMPTEQNHSTFIFTNCENLEQAAKEEITSYAQRK

HMMPanther: PTHR23155
25-939 PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

ADLRRRFVSHLVTALKLNNINVFIDDYEDRGQPLDVLLKRIEESKIVLAIFSGNYTESVWCVRELEKIKDCTDEGTLVAIPIFYKLEPSTVRDLKGKFGDRFRSMAKGDERKKKWKEAFNLIPNIMGIIIDKKSVESEKVNEIVKAVKTALTGIPPEGSHNAVVGALGNSNAGTSSGDKKHETFGNEQRLKDLEEKLDRDKYKGTRIIGVVGMPGIGKTTLLKELYKTWQGKFSRHALIDQIRVKSKHLELDRLPQMLLGELSKLNHPHVDNLKDPYSQLHERKVLVVLDDVSKREQIDALREILDWIKEGKEGSRVVIATSDMSLTNGLVDDTYMVQNLNHRDSLQLFHYHAFIDDQANPQKKDFMKLSEGFVHYARGHPLALKVLGGELNKKSMDHWNSKMKKLAQSPSPNIVSVFQVSYDELTTAQKDAFLDIACFRSQDKDYVESLLASSDLGSAEAMSAVKSLTDKFLINTCDGRVEMHDLLYKFSREVDLKASNQDGSRQRRLWLHQHIIKGGIINVLQNKMKAANVRGIFLDLSEVEDETSLDRDHFINMGNLRYLKFYNSHCPQECKTNNKINIPDKLKLPLKEVRCLHWLKFPLETLPNDFNPINLVDLKLPYSEMEQLWEGDKDTPCLRWVDLNHSSKLCSLSGLSKAEKLQRLNLEGCTTLKAFPHDMKKMKMLAFLNLKGCTSLESLPEMNLISLKTLTLSGCSTFKEFPLISDNIETLYLDGTAISQLPMNMEKLQRLVVLNMKDCKMLEEIPGRVGELKALQELILSDCLNLKIFPEIDISFLNILLLDGTAIEVMPQLPSVQYLCLSRNAKISCLPVGISQLSQLKWLDLKYCTSLTSVPEFPPNLQCLDAHGCSSLKTVSKPLARIMPTEQNHSTFIFTNCENLEQAAKEEITSYAQRK

Gene3D: G3DSA:3.40.50.300
205-356 G3DSA:3.40.50.300

HETFGNEQRLKDLEEKLDRDKYKGTRIIGVVGMPGIGKTTLLKELYKTWQGKFSRHALIDQIRVKSKHLELDRLPQMLLGELSKLNHPHVDNLKDPYSQLHERKVLVVLDDVSKREQIDALREILDWIKEGKEGSRVVIATSDMSLTNGLVD

superfamily: SSF52540
205-438 SSF52540

HETFGNEQRLKDLEEKLDRDKYKGTRIIGVVGMPGIGKTTLLKELYKTWQGKFSRHALIDQIRVKSKHLELDRLPQMLLGELSKLNHPHVDNLKDPYSQLHERKVLVVLDDVSKREQIDALREILDWIKEGKEGSRVVIATSDMSLTNGLVDDTYMVQNLNHRDSLQLFHYHAFIDDQANPQKKDFMKLSEGFVHYARGHPLALKVLGGELNKKSMDHWNSKMKKLAQSPSPNI

HMMPfam: PF00931
IPR002182
211-472 NB-ARC,NBS
NB-ARC

EQRLKDLEEKLDRDKYKGTRIIGVVGMPGIGKTTLLKELYKTWQGKFSRHALIDQIRVKSKHLELDRLPQMLLGELSKLNHPHVDNLKDPYSQLHERKVLVVLDDVSKREQIDALREILDWIKEGKEGSRVVIATSDMSLTNGLVDDTYMVQNLNHRDSLQLFHYHAFIDDQANPQKKDFMKLSEGFVHYARGHPLALKVLGGELNKKSMDHWNSKMKKLAQSPSPNIVSVFQVSYDELTTAQKDAFLDIACFRSQDKDYVE

FPrintScan: PR00364
IPR000767
231-246 DISEASERSIST
Disease resistance protein

IIGVVGMPGIGKTTLL

FPrintScan: PR00364
IPR000767
303-317 DISEASERSIST
Disease resistance protein

QLHERKVLVVLDDVS

FPrintScan: PR00364
IPR000767
401-415 DISEASERSIST
Disease resistance protein

ARGHPLALKVLGGEL

superfamily: SSF46785
436-540 SSF46785

PNIVSVFQVSYDELTTAQKDAFLDIACFRSQDKDYVESLLASSDLGSAEAMSAVKSLTDKFLINTCDGRVEMHDLLYKFSREVDLKASNQDGSRQRRLWLHQHII

superfamily: SSF52058
569-940 SSF52058,LRR

DETSLDRDHFINMGNLRYLKFYNSHCPQECKTNNKINIPDKLKLPLKEVRCLHWLKFPLETLPNDFNPINLVDLKLPYSEMEQLWEGDKDTPCLRWVDLNHSSKLCSLSGLSKAEKLQRLNLEGCTTLKAFPHDMKKMKMLAFLNLKGCTSLESLPEMNLISLKTLTLSGCSTFKEFPLISDNIETLYLDGTAISQLPMNMEKLQRLVVLNMKDCKMLEEIPGRVGELKALQELILSDCLNLKIFPEIDISFLNILLLDGTAIEVMPQLPSVQYLCLSRNAKISCLPVGISQLSQLKWLDLKYCTSLTSVPEFPPNLQCLDAHGCSSLKTVSKPLARIMPTEQNHSTFIFTNCENLEQAAKEEITSYAQRKC

Gene3D: G3DSA:3.80.10.10
619-810 G3DSA:3.80.10.10

CLHWLKFPLETLPNDFNPINLVDLKLPYSEMEQLWEGDKDTPCLRWVDLNHSSKLCSLSGLSKAEKLQRLNLEGCTTLKAFPHDMKKMKMLAFLNLKGCTSLESLPEMNLISLKTLTLSGCSTFKEFPLISDNIETLYLDGTAISQLPMNMEKLQRLVVLNMKDCKMLEEIPGRVGELKALQELILSDCLNL

HMMPfam: PF07725
IPR011713
638-657 LRR_3
Leucine-rich repeat 3

NLVDLKLPYSEMEQLWEGDK

Gene3D: G3DSA:3.80.10.10
827-898 G3DSA:3.80.10.10

DGTAIEVMPQLPSVQYLCLSRNAKISCLPVGISQLSQLKWLDLKYCTSLTSVPEFPPNLQCLDAHGCSSLKT

FPrintScan: PR00364
IPR000767
859-875 DISEASERSIST
Disease resistance protein

SQLSQLKWLDLKYCTSL






List of Contributions

There has not been any contribution yet.


Analyses

Blast

Blast matches against Reference R-Genes. Show


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