PRGDB00067079 (Bna.917)

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Bna.917
Gene Type Putative_R-Genes,_predicted_from_NCBI_UniGene
GenBank 151234644 (EV145070)
Gene Class Unknown
Domain Type
Gene Species Brassica napus

Comment?

0211004 Brassica napus Very early anther Brassica napus cDNA, mRNA sequence

DNA Sequence

GCAGAAGAGAGAGTGACGAAGTTGGTCAGAGAGCCAGAGGCGCAGATGTCTAAGGGCCGATAATGTGATATAAAAGGGTAAATTGATGGATGCAAATGGAGCGCTCAGCGTATAGCAGGTGGCTGAGTTTACAAAGTAAAAAAGAAAACTCAAAATCTAATACATCTCTCACTGCGTGAGCAGCTTAGAGTCACATGCCACTATCTTGACCCGGCTCACATTCTCTTGACGGTCGTCAATCTTGAACATTGCGTCCTGTAATATAAAGGTCCAGACGTTGTCACAGAACCTGTAAGTGTGCAGGTGCCCCTTGATAGACACCTTGGTCTTGACTTGGCTCTCCAGAGCTTCAGTCATGGACTTGTCAAACTGAACAAGGACTTGGATAGCTAGCTCAGGGCTCAAGGTACCGCTCTGAACCATCTCGTCCAAAGTCTCCGTCAAACACATCCCTATCGTCGATCTCCTGTATAGCTCAAACGTCGCCATTATCTAACGACCGATCTCCGGCGACGTGAAAGAAGGATGGGTACCGTTGGGTCGATTGCGAAGGATTTGTTCTCTTGGAGCGGAGAAAATAATcggacgcgtgggtcgacccgggaattccggaccggtacctgcaggcgtaccagctttccctatagtgagtcgtattagagcttggcgtaatcatggtcatagctgtttcctgtgtgaaattgttatccgctcacaattccacacaacatacgagcc


Protein sequences

Name Description Sequence
Bna.917 translated coding region predicted by ESTScan from UniGene Bna.917

MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQVKTKVSIKGHLHTYRFCDNVWTFILQDAMFKIDDRQENVSRVKIVACDSKLLTQ

Domains

Domain Start-End Description Sequence

BlastProDom: PD009224
IPR015872
1-50 T2AG_ARATH_Q39236;
Transcription initiation factor IIA, gamma subunit

MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALE

HMMPIR: PIRSF009415
IPR003194
1-106 Transcription initiation factor IIA, gamma subunit
Transcription initiation factor IIA, gamma subunit

MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQVKTKVSIKGHLHTYRFCDNVWTFILQDAMFKIDDRQENVSRVKIVACDSKLLTQ

HMMPanther: PTHR10966
IPR003194
1-103 TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 2
Transcription initiation factor IIA, gamma subunit

MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQVKTKVSIKGHLHTYRFCDNVWTFILQDAMFKIDDRQENVSRVKIVACDSKL

Gene3D: G3DSA:1.10.287.190
IPR015872
2-54 no description
Transcription initiation factor IIA, gamma subunit

ATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQVK

HMMPfam: PF02268
IPR015872
3-50 TFIIA_gamma_N
Transcription initiation factor IIA, gamma subunit

TFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALE

superfamily: SSF47396
IPR009083
4-54 Transcription factor IIA (TFIIA), alpha-helical domain
Transcription factor IIA, helical

FELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQVK

HMMPfam: PF02751
IPR015871
52-101 TFIIA_gamma_C
Transcription initiation factor IIA, gamma subunit

QVKTKVSIKGHLHTYRFCDNVWTFILQDAMFKIDDRQENVSRVKIVACDS

superfamily: SSF50784
IPR009088
52-102 Transcription factor IIA (TFIIA), beta-barrel domain
Transcription factor IIA, beta-barrel

QVKTKVSIKGHLHTYRFCDNVWTFILQDAMFKIDDRQENVSRVKIVACDSK

Gene3D: G3DSA:2.30.18.10
IPR009088
55-105 no description
Transcription factor IIA, beta-barrel

TKVSIKGHLHTYRFCDNVWTFILQDAMFKIDDRQENVSRVKIVACDSKLLT






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Analyses

Blast

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