PRGDB00067414 (Bol.3332)

Bol.3332
Gene Type	Putative_R-Genes,_predicted_from_NCBI_UniGene
GenBank	308624434 (DK465946)
Gene Class	Unknown
Domain Type
Gene Species	Brassica oleracea
	Comment?

DK465946 full-length kale cDNA library (seedlings) Brassica oleracea var. acephala cDNA clone KALE-027D09 5', mRNA sequence

DNA Sequence

GAGGAGCTTCCGCCTTACTCAGAGTGTGGAGCAGGAGGAGAAACAAGAAAAGGGGAAAAATGGACTATATGAATGGACCAGGGAGACACCATCTTTTCGTACCAGGACCAGTGAACATACCGGAACAGGTGATCCGGGCGATGAACAGAAACAACGAGGATTACCGTTCACCAGCCATCCCCGCACTTACAAAAACGTTGTTGGAGGACGTGAAGAAGATATTCAAGACAACATCTGGGACACCGTTTATGTTTCCGACTACTGGTACTGGTGCTTGGGAGAGTGCCTTGACCAACACGCTATCTCCTGGAGATAGGATCGTCTCGTTTCTGATAGGGCAATTCAGCTTGCTGTGGATTGACCAGCAGAAGAGGCTAAATTTCAACGTTGATGTGGTGGAGAGTGACTGGGGACAAGGTGCTAATCTCCAAGTCTTGGCCTCAAAGCTCTCACAGGACCAAAATCATTCCATCAAAGCCATTTGCATTGTCCACAACGAGACCGCGACTGGAGTCACTAATGACATCTCTGCTGTCCGAACCCTCCTCGATCACTACAAGCACCCGGCTTTGCTGCTTGTGGACGGTGTGTCGTCCATATGTGCGCTTGATTTTCGAATGGATGAGTGGGGGAGTGGATGTGGCCTTGACCGGATCTCAGAAGGCTTTATCTCTTCCAACAGGCTTGGTATTGTGTGCGCCAGTCCAAAAGCTTTGGAAGCTACCAAAACCTCAAATCCCTCAAAGTCTTCTTTGATTGGAATGACTACCTCAAGTTTTACAGCTCGGTACATATTGGCCATACACACCTTCCATTCAACTCCTTTACGTCTAGAGCTGCGCTGATCTTATCTTTGAGACGACTTGAGATGTCATCGCCGTCATGCCGTTTGGAAAGCCACACGG

Protein sequences

Name	Description	Sequence
Bol.3332	translated coding region predicted by ESTScan from UniGene Bol.3332	MDYMNGPGRHHLFVPGPVNIPEQVIRAMNRNNEDYRSPAIPALTKTLLEDVKKIFKTTSGTPFMFPTTGTGAWESALTNTLSPGDRIVSFLIGQFSLLWIDQQKRLNFNVDVVESDWGQGANLQVLASKLSQDQNHSIKAICIVHNETATGVTNDISAVRTLLDHYKHPALLLVDGVSSICALDFRMDEWGSGCGLDRISEGFISSNRLGIVCASPKALEATKTSNPSKSSLIGMTTSSFTARYILAIHTFHSTPLRLELR

Domains

Domain	Start-End	Description	Sequence
HMMPanther: PTHR21152:SF7	1-230	SUBFAMILY NOT NAMED,SUBFAMILY NOT NAMED	MDYMNGPGRHHLFVPGPVNIPEQVIRAMNRNNEDYRSPAIPALTKTLLEDVKKIFKTTSGTPFMFPTTGTGAWESALTNTLSPGDRIVSFLIGQFSLLWIDQQKRLNFNVDVVESDWGQGANLQVLASKLSQDQNHSIKAICIVHNETATGVTNDISAVRTLLDHYKHPALLLVDGVSSICALDFRMDEWGSGCGLDRISEGFISSNRLGIVCASPKALEATKTSNPSKS
HMMPanther: PTHR21152	1-230	FAMILY NOT NAMED,AMINOTRANSFERASE CLASS V	MDYMNGPGRHHLFVPGPVNIPEQVIRAMNRNNEDYRSPAIPALTKTLLEDVKKIFKTTSGTPFMFPTTGTGAWESALTNTLSPGDRIVSFLIGQFSLLWIDQQKRLNFNVDVVESDWGQGANLQVLASKLSQDQNHSIKAICIVHNETATGVTNDISAVRTLLDHYKHPALLLVDGVSSICALDFRMDEWGSGCGLDRISEGFISSNRLGIVCASPKALEATKTSNPSKS
superfamily: SSF53383 IPR015424	7-191	PLP-dependent transferases Pyridoxal phosphate-dependent transferase, major d	PGRHHLFVPGPVNIPEQVIRAMNRNNEDYRSPAIPALTKTLLEDVKKIFKTTSGTPFMFPTTGTGAWESALTNTLSPGDRIVSFLIGQFSLLWIDQQKRLNFNVDVVESDWGQGANLQVLASKLSQDQNHSIKAICIVHNETATGVTNDISAVRTLLDHYKHPALLLVDGVSSICALDFRMDEWG
HMMPfam: PF00266 IPR000192	12-191	Aminotran_5 Aminotransferase, class V/Cysteine desulfurase	LFVPGPVNIPEQVIRAMNRNNEDYRSPAIPALTKTLLEDVKKIFKTTSGTPFMFPTTGTGAWESALTNTLSPGDRIVSFLIGQFSLLWIDQQKRLNFNVDVVESDWGQGANLQVLASKLSQDQNHSIKAICIVHNETATGVTNDISAVRTLLDHYKHPALLLVDGVSSICALDFRMDEWG
Gene3D: G3DSA:3.40.640.10 IPR015421	21-226	no description Pyridoxal phosphate-dependent transferase, major r	PEQVIRAMNRNNEDYRSPAIPALTKTLLEDVKKIFKTTSGTPFMFPTTGTGAWESALTNTLSPGDRIVSFLIGQFSLLWIDQQKRLNFNVDVVESDWGQGANLQVLASKLSQDQNHSIKAICIVHNETATGVTNDISAVRTLLDHYKHPALLLVDGVSSICALDFRMDEWGSGCGLDRISEGFISSNRLGIVCASPKALEATKTSN
Seg: seg	57-71	seg	TTSGTPFMFPTTGTG

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Analyses

Blast

Blast matches against Reference R-Genes. Show