PRGDB00067414 (Bol.3332)
Bol.3332 | |
---|---|
Gene Type | Putative_R-Genes,_predicted_from_NCBI_UniGene |
GenBank | 308624434 (DK465946) |
Gene Class | Unknown |
Domain Type | |
Gene Species | Brassica oleracea |
DNA Sequence
GAGGAGCTTCCGCCTTACTCAGAGTGTGGAGCAGGAGGAGAAACAAGAAAAGGGGAAAAATGGACTATATGAATGGACCAGGGAGACACCATCTTTTCGTACCAGGACCAGTGAACATACCGGAACAGGTGATCCGGGCGATGAACAGAAACAACGAGGATTACCGTTCACCAGCCATCCCCGCACTTACAAAAACGTTGTTGGAGGACGTGAAGAAGATATTCAAGACAACATCTGGGACACCGTTTATGTTTCCGACTACTGGTACTGGTGCTTGGGAGAGTGCCTTGACCAACACGCTATCTCCTGGAGATAGGATCGTCTCGTTTCTGATAGGGCAATTCAGCTTGCTGTGGATTGACCAGCAGAAGAGGCTAAATTTCAACGTTGATGTGGTGGAGAGTGACTGGGGACAAGGTGCTAATCTCCAAGTCTTGGCCTCAAAGCTCTCACAGGACCAAAATCATTCCATCAAAGCCATTTGCATTGTCCACAACGAGACCGCGACTGGAGTCACTAATGACATCTCTGCTGTCCGAACCCTCCTCGATCACTACAAGCACCCGGCTTTGCTGCTTGTGGACGGTGTGTCGTCCATATGTGCGCTTGATTTTCGAATGGATGAGTGGGGGAGTGGATGTGGCCTTGACCGGATCTCAGAAGGCTTTATCTCTTCCAACAGGCTTGGTATTGTGTGCGCCAGTCCAAAAGCTTTGGAAGCTACCAAAACCTCAAATCCCTCAAAGTCTTCTTTGATTGGAATGACTACCTCAAGTTTTACAGCTCGGTACATATTGGCCATACACACCTTCCATTCAACTCCTTTACGTCTAGAGCTGCGCTGATCTTATCTTTGAGACGACTTGAGATGTCATCGCCGTCATGCCGTTTGGAAAGCCACACGG
Protein sequences
Name | Description | Sequence |
---|---|---|
Bol.3332 | translated coding region predicted by ESTScan from UniGene Bol.3332 | MDYMNGPGRHHLFVPGPVNIPEQVIRAMNRNNEDYRSPAIPALTKTLLEDVKKIFKTTSGTPFMFPTTGTGAWESALTNTLSPGDRIVSFLIGQFSLLWIDQQKRLNFNVDVVESDWGQGANLQVLASKLSQDQNHSIKAICIVHNETATGVTNDISAVRTLLDHYKHPALLLVDGVSSICALDFRMDEWGSGCGLDRISEGFISSNRLGIVCASPKALEATKTSNPSKSSLIGMTTSSFTARYILAIHTFHSTPLRLELR |
Domains
Domain | Start-End | Description | Sequence
|
---|---|---|---|
HMMPanther: PTHR21152:SF7 | 1-230 | SUBFAMILY NOT NAMED,SUBFAMILY NOT NAMED | MDYMNGPGRHHLFVPGPVNIPEQVIRAMNRNNEDYRSPAIPALTKTLLEDVKKIFKTTSGTPFMFPTTGTGAWESALTNTLSPGDRIVSFLIGQFSLLWIDQQKRLNFNVDVVESDWGQGANLQVLASKLSQDQNHSIKAICIVHNETATGVTNDISAVRTLLDHYKHPALLLVDGVSSICALDFRMDEWGSGCGLDRISEGFISSNRLGIVCASPKALEATKTSNPSKS |
HMMPanther: PTHR21152 | 1-230 | FAMILY NOT NAMED,AMINOTRANSFERASE CLASS V | MDYMNGPGRHHLFVPGPVNIPEQVIRAMNRNNEDYRSPAIPALTKTLLEDVKKIFKTTSGTPFMFPTTGTGAWESALTNTLSPGDRIVSFLIGQFSLLWIDQQKRLNFNVDVVESDWGQGANLQVLASKLSQDQNHSIKAICIVHNETATGVTNDISAVRTLLDHYKHPALLLVDGVSSICALDFRMDEWGSGCGLDRISEGFISSNRLGIVCASPKALEATKTSNPSKS |
superfamily: SSF53383 IPR015424
|
7-191 | PLP-dependent transferases Pyridoxal phosphate-dependent transferase, major d
|
PGRHHLFVPGPVNIPEQVIRAMNRNNEDYRSPAIPALTKTLLEDVKKIFKTTSGTPFMFPTTGTGAWESALTNTLSPGDRIVSFLIGQFSLLWIDQQKRLNFNVDVVESDWGQGANLQVLASKLSQDQNHSIKAICIVHNETATGVTNDISAVRTLLDHYKHPALLLVDGVSSICALDFRMDEWG |
HMMPfam: PF00266 IPR000192
|
12-191 | Aminotran_5 Aminotransferase, class V/Cysteine desulfurase
|
LFVPGPVNIPEQVIRAMNRNNEDYRSPAIPALTKTLLEDVKKIFKTTSGTPFMFPTTGTGAWESALTNTLSPGDRIVSFLIGQFSLLWIDQQKRLNFNVDVVESDWGQGANLQVLASKLSQDQNHSIKAICIVHNETATGVTNDISAVRTLLDHYKHPALLLVDGVSSICALDFRMDEWG |
Gene3D: G3DSA:3.40.640.10 IPR015421
|
21-226 | no description Pyridoxal phosphate-dependent transferase, major r
|
PEQVIRAMNRNNEDYRSPAIPALTKTLLEDVKKIFKTTSGTPFMFPTTGTGAWESALTNTLSPGDRIVSFLIGQFSLLWIDQQKRLNFNVDVVESDWGQGANLQVLASKLSQDQNHSIKAICIVHNETATGVTNDISAVRTLLDHYKHPALLLVDGVSSICALDFRMDEWGSGCGLDRISEGFISSNRLGIVCASPKALEATKTSN |
Seg: seg | 57-71 | seg | TTSGTPFMFPTTGTG |
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