PRGDB00067453 (Bol.18945)
| Bol.18945 | |
|---|---|
| Gene Type | Putative_R-Genes,_predicted_from_NCBI_UniGene |
| GenBank | 4741218 (Y18260) |
| Gene Class | RLK |
| Domain Type | Ser-Thr Kinase, Receptor-Like Kinase |
| Gene Species | Brassica oleracea |
DNA Sequence
TTACCACCATTCTTACACCTTCTCGTTCTTGCTAGTCTTCCTTGTCTTGATTCTATTTCATCCTGCCCTTTCGATCTATGTCAACACTTTGTCGTCTTCAGAGTCTCTCACAATCTCGAGCAATAGAACACTTGTATCTCACGGTGGAGTCTTCGAGCTTGGTTTCTTCAAACCCTTGGGACGGTCGCGTTGGTATCTCGGAATATGGTATAAGAAAGTCTCCCAGAAAACCTACGCATGGGTCGCCAACAGAGACAGCCCTCTCTCCAATTCCATTGGAACCCTCAAAATCTCTGGCAACAATCTTGTCCTGCTAGGTCAGTCTAATAACACTGTTTGGTCGACAAATCTTACTAGAGAAAATGTGAGATCACCAGTGATAGCAGAGCTTCTTCCCAACGGTAATTTTGTAATGAGATACTCCAGCAACAAAGACTCAAGTGGATTCTTGTGGCAGAGTTTCGATTTTCCGACAGATACTTTACTTCCGGAGATGAAACTAGGTTACGATTTCAAAACAGGGCGCAACAGGTTCCTTACATCATGGAGATCCTATGATGATCCGTCAAGCGGGAAATTCACCTACGAACTGGACATACAAAGGGGATTGCCTGAGTTTATTCTTATAAATCGATTTTTGAATCAACGTGTTGTAATGCAAAGGAGCGGTCCTTGGAATGGAATCGAGTTTAATGGCATACCGGAGGTGCAAGGATTAAATTACATGGTTTACAATTATACGGAGAACAGTGAGGAGATCGCTTACACGTTCCATATGACCAACCAAAGCATCTACTCCAGATTGACAGTCACTGACTATGCACTCAATCGATACACGCGGATCCCGCCATCATGGGGATGGAGCATGTTCTGGAGTTTACCAACGGACGTGTGCGATTCTCTTTACTTCTGTGGATCTTATTCTTACTGTGACCTAAACACGTCACCTTACTGTAACTGTATTAGAGGGTTCGTTCCCAAGAACCGGCAGCGGTGGGACTTGAGAGACGGATCACATGGGTGTGTGAGGAGGACTCAGATGAGCTGTAGTGGAGATGGGTTTTTGCGGCTAAACAATATGAAGTTGCCGGATACTAAGACGGCGACTGTGGATCGGACAACTGATGTGAAAAAATGTGAAGAGAAGTGTCTTAGCGATTGTAACTGTACGTCGTTTGCGACTGCAGATGTTCGAAACGGCGGATTGGGTTGTGTGTTTTGGACCGGAGATCTCGTTGAGATCCGGAAACAAGCCGTCGTTGGTCAAGATCTTTACGTCAGATTGAATGCTGCTGATCTAGCCTCGGGTGAGAAGAGAGACCGAACTAAAAAAATCATAGGTTGGAGTATTGGAGTCACCGTTATGCTTATTCTGAGTGTTATCGTGTTCTGCTTTTGGAGGAGAAGACAGAAGCAAGCAAAAGCAGATGCAACACCTATTGTGGGAAATCAAGTTCTAATGAACGAGGTGGTGTTACCAAGAAAGAAGATAAATTTTTCTGGTGAGGACGAAGTAGAAAATTTGGAACTTTCATTGGAGTTTGAAGCTGTTGTCACAGCCACCGAACATTTCTCTGATTTTAACAAGGTCGGAAAAGGTGGTTTTGGTGTTGTTTACAAGGGAAGGTTAGTTGACGGGCAAGAAATTGCAGTTAAGAGACTATCAGAAATGTCAGCTCAAGGTACCGATGAGTTCATGAACGAAGTCAGGCTAATTGCAAAGCTTCAGCACAATAATCTTGTCCGACTTCTTGGCTGTTGTGTTTATGAGGGCGAGAAGATCTTAATTTACGAGTACTTGGAGAATCTAAGCCTCGACTCTCATCTCTTTGATGAAACCAGGAGCTGTATGTTAAATTGGCAAATGAGATTTGATATTATCAATGGTATTGCCCGAGGGCTTCTGTATCTTCACCAAGATTCACGGTTTAGAATCATCCATAGGGATTTGAAAGCAAGCAATGTCTTGCTTGATAAAGATATGACCCCAAAAATTTCAGACTTCGGAATGGCAAGGATCTTTGGACGGGATGAGACGGAAGCTGACACGAGGAAGGTGGTCGGAACTTATGGCTACATGTCTCCAGAATATGCGATGAACGGGACATTCTCGATGAAGTCAGATGTGTTCAGTTTTGGGGTCTTGCTTCTTGAAATTATAAGTGGCAAGAGGAACAAAGGCTTCTGCGACTCGGATAGTAATCTTAATCTTCTCGGATGTGTGTGGAGGAATTGGAAAGAAGGTCAAGGTCTAGAGATAGTAGACAGGGTCATCATAGATTCTTCATCACCAACGTTCAGGCCACGTGAAATCTTAAGATGCTTACAAATTGGCCTCTTGTGTGTTCAAGAACGTGTAGAGGATAGACCAATGATGTCGTCAGTAGTTTTGATGCTCGGAAGTGAAACTGCATTGATTCCTCAACCTAAACAGCCAGGTTATTGCGTCAGCCAAAGTTCTCTTGAAACTTATTCTAGTTGGAGTAAACTGCGTGACGATGAAAATTGGACAGTGAACCAAATCACCATGTCGATCATTGACGCTCGGTAATATGATAGTCTTTGATAATATTCTCATTATTAAAGTTTTACTAAATGGAAAAAATGAGTTTTAACAAATTGAGTGACAATGCGTGCGAAACTCCTCAGTCTCTATCGAAATTTTCATATATCCTCTGATATTCTCTCGATCTGGTTTCTTTATTTCGAGTCAACTCACAGTCAGCAACTGCAGCAACCATCTCAACACGTCAACACCGGCAATTCAACGACAACCACAGTACATATTTTTTACTCTGTTTTTGTAAGCTCAGGAGCTTGGAAAAAACACACGTTATTCTCAGTATAGTAAATTTCAGTCATTaaaaaaaaaaaaaaaaa
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| Bol.18945 | translated coding region predicted by ESTScan from UniGene Bol.18945 | XYHHSYTFSFLLVFLVLILFHPALSIYVNTLSSSESLTISSNRTLVSHGGVFELGFFKPLGRSRWYLGIWYKKVSQKTYAWVANRDSPLSNSIGTLKISGNNLVLLGQSNNTVWSTNLTRENVRSPVIAELLPNGNFVMRYSSNKDSSGFLWQSFDFPTDTLLPEMKLGYDFKTGRNRFLTSWRSYDDPSSGKFTYELDIQRGLPEFILINRFLNQRVVMQRSGPWNGIEFNGIPEVQGLNYMVYNYTENSEEIAYTFHMTNQSIYSRLTVTDYALNRYTRIPPSWGWSMFWSLPTDVCDSLYFCGSYSYCDLNTSPYCNCIRGFVPKNRQRWDLRDGSHGCVRRTQMSCSGDGFLRLNNMKLPDTKTATVDRTTDVKKCEEKCLSDCNCTSFATADVRNGGLGCVFWTGDLVEIRKQAVVGQDLYVRLNAADLASGEKRDRTKKIIGWSIGVTVMLILSVIVFCFWRRRQKQAKADATPIVGNQVLMNEVVLPRKKINFSGEDEVENLELSLEFEAVVTATEHFSDFNKVGKGGFGVVYKGRLVDGQEIAVKRLSEMSAQGTDEFMNEVRLIAKLQHNNLVRLLGCCVYEGEKILIYEYLENLSLDSHLFDETRSCMLNWQMRFDIINGIARGLLYLHQDSRFRIIHRDLKASNVLLDKDMTPKISDFGMARIFGRDETEADTRKVVGTYGYMSPEYAMNGTFSMKSDVFSFGVLLLEIISGKRNKGFCDSDSNLNLLGCVWRNWKEGQGLEIVDRVIIDSSSPTFRPREILRCLQIGLLCVQERVEDRPMMSSVVLMLGSETALIPQPKQPGYCVSQSSLETYSSWSKLRDDENWTVNQITMSIIDAR |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| Seg: seg | 8-20 | seg | FSFLLVFLVLILF |
| HMMPanther: PTHR24420:SF432 | 10-850 | SUBFAMILY NOT NAMED,SUBFAMILY NOT NAMED | FLLVFLVLILFHPALSIYVNTLSSSESLTISSNRTLVSHGGVFELGFFKPLGRSRWYLGIWYKKVSQKTYAWVANRDSPLSNSIGTLKISGNNLVLLGQSNNTVWSTNLTRENVRSPVIAELLPNGNFVMRYSSNKDSSGFLWQSFDFPTDTLLPEMKLGYDFKTGRNRFLTSWRSYDDPSSGKFTYELDIQRGLPEFILINRFLNQRVVMQRSGPWNGIEFNGIPEVQGLNYMVYNYTENSEEIAYTFHMTNQSIYSRLTVTDYALNRYTRIPPSWGWSMFWSLPTDVCDSLYFCGSYSYCDLNTSPYCNCIRGFVPKNRQRWDLRDGSHGCVRRTQMSCSGDGFLRLNNMKLPDTKTATVDRTTDVKKCEEKCLSDCNCTSFATADVRNGGLGCVFWTGDLVEIRKQAVVGQDLYVRLNAADLASGEKRDRTKKIIGWSIGVTVMLILSVIVFCFWRRRQKQAKADATPIVGNQVLMNEVVLPRKKINFSGEDEVENLELSLEFEAVVTATEHFSDFNKVGKGGFGVVYKGRLVDGQEIAVKRLSEMSAQGTDEFMNEVRLIAKLQHNNLVRLLGCCVYEGEKILIYEYLENLSLDSHLFDETRSCMLNWQMRFDIINGIARGLLYLHQDSRFRIIHRDLKASNVLLDKDMTPKISDFGMARIFGRDETEADTRKVVGTYGYMSPEYAMNGTFSMKSDVFSFGVLLLEIISGKRNKGFCDSDSNLNLLGCVWRNWKEGQGLEIVDRVIIDSSSPTFRPREILRCLQIGLLCVQERVEDRPMMSSVVLMLGSETALIPQPKQPGYCVSQSSLETYSSWSKLRDDENWTVNQITMSIIDAR |
| HMMPanther: PTHR24420 | 10-850 | FAMILY NOT NAMED,FAMILY NOT NAMED | FLLVFLVLILFHPALSIYVNTLSSSESLTISSNRTLVSHGGVFELGFFKPLGRSRWYLGIWYKKVSQKTYAWVANRDSPLSNSIGTLKISGNNLVLLGQSNNTVWSTNLTRENVRSPVIAELLPNGNFVMRYSSNKDSSGFLWQSFDFPTDTLLPEMKLGYDFKTGRNRFLTSWRSYDDPSSGKFTYELDIQRGLPEFILINRFLNQRVVMQRSGPWNGIEFNGIPEVQGLNYMVYNYTENSEEIAYTFHMTNQSIYSRLTVTDYALNRYTRIPPSWGWSMFWSLPTDVCDSLYFCGSYSYCDLNTSPYCNCIRGFVPKNRQRWDLRDGSHGCVRRTQMSCSGDGFLRLNNMKLPDTKTATVDRTTDVKKCEEKCLSDCNCTSFATADVRNGGLGCVFWTGDLVEIRKQAVVGQDLYVRLNAADLASGEKRDRTKKIIGWSIGVTVMLILSVIVFCFWRRRQKQAKADATPIVGNQVLMNEVVLPRKKINFSGEDEVENLELSLEFEAVVTATEHFSDFNKVGKGGFGVVYKGRLVDGQEIAVKRLSEMSAQGTDEFMNEVRLIAKLQHNNLVRLLGCCVYEGEKILIYEYLENLSLDSHLFDETRSCMLNWQMRFDIINGIARGLLYLHQDSRFRIIHRDLKASNVLLDKDMTPKISDFGMARIFGRDETEADTRKVVGTYGYMSPEYAMNGTFSMKSDVFSFGVLLLEIISGKRNKGFCDSDSNLNLLGCVWRNWKEGQGLEIVDRVIIDSSSPTFRPREILRCLQIGLLCVQERVEDRPMMSSVVLMLGSETALIPQPKQPGYCVSQSSLETYSSWSKLRDDENWTVNQITMSIIDAR |
| ProfileScan: PS50927 IPR001480
|
30-152 | BULB_LECTIN Bulb-type lectin domain
|
TLSSSESLTISSNRTLVSHGGVFELGFFKPLGRSRWYLGIWYKKVSQKTYAWVANRDSPLSNSIGTLKISGNNLVLLGQSNNTVWSTNLTRENVRSPVIAELLPNGNFVMRYSSNKDSSGFLW |
| Seg: seg | 30-41 | seg | TLSSSESLTISS |
| HMMSmart: SM00108 IPR001480
|
36-158 | Bulb-type mannose-specific lectin Bulb-type lectin domain
|
SLTISSNRTLVSHGGVFELGFFKPLGRSRWYLGIWYKKVSQKTYAWVANRDSPLSNSIGTLKISGNNLVLLGQSNNTVWSTNLTRENVRSPVIAELLPNGNFVMRYSSNKDSSGFLWQSFDFP |
| superfamily: SSF51110 IPR001480
|
67-189 | alpha-D-mannose-specific plant lectins Bulb-type lectin domain
|
LGIWYKKVSQKTYAWVANRDSPLSNSIGTLKISGNNLVLLGQSNNTVWSTNLTRENVRSPVIAELLPNGNFVMRYSSNKDSSGFLWQSFDFPTDTLLPEMKLGYDFKTGRNRFLTSWRSYDDP |
| HMMPfam: PF01453 IPR001480
|
77-190 | B_lectin Bulb-type lectin domain
|
KTYAWVANRDSPLSNSIGTLKISGNNLVLLGQSNNTVWSTNLTRENVRSPVIAELLPNGNFVMRYSSNKDSSGFLWQSFDFPTDTLLPEMKLGYDFKTGRNRFLTSWRSYDDPS |
| Gene3D: G3DSA:2.90.10.10 IPR001480
|
191-232 | no description Bulb-type lectin domain
|
SGKFTYELDIQRGLPEFILINRFLNQRVVMQRSGPWNGIEFN |
| HMMPfam: PF00954 IPR000858
|
222-329 | S_locus_glycop S-locus glycoprotein
|
RSGPWNGIEFNGIPEVQGLNYMVYNYTENSEEIAYTFHMTNQSIYSRLTVTDYALNRYTRIPPSWGWSMFWSLPTDVCDSLYFCGSYSYCDLNTSPYCNCIRGFVPKN |
| HMMPfam: PF08276 IPR013227
|
350-414 | PAN_2 PAN-2 domain
|
CSGDGFLRLNNMKLPDTKTATVDRTTDVKKCEEKCLSDCNCTSFATADVRNGGLGCVFWTGDLVE |
| ProfileScan: PS50948 IPR003609
|
350-430 | PAN Apple-like
|
CSGDGFLRLNNMKLPDTKTATVDRTTDVKKCEEKCLSDCNCTSFATADVRNGGLGCVFWTGDLVEIRKQAVVGQDLYVRLN |
| HMMSmart: SM00473 IPR003609
|
350-429 | divergent subfamily of APPLE domains Apple-like
|
CSGDGFLRLNNMKLPDTKTATVDRTTDVKKCEEKCLSDCNCTSFATADVRNGGLGCVFWTGDLVEIRKQAVVGQDLYVRL |
| HMMPfam: PF12398 IPR022126
|
478-515 | DUF3660 S-locus, receptor kinase
|
ATPIVGNQVLMNEVVLPRKKINFSGEDEVENLELSLEF |
| superfamily: SSF56112 IPR011009
|
495-800 | Protein kinase-like (PK-like) Protein kinase-like domain
|
RKKINFSGEDEVENLELSLEFEAVVTATEHFSDFNKVGKGGFGVVYKGRLVDGQEIAVKRLSEMSAQGTDEFMNEVRLIAKLQHNNLVRLLGCCVYEGEKILIYEYLENLSLDSHLFDETRSCMLNWQMRFDIINGIARGLLYLHQDSRFRIIHRDLKASNVLLDKDMTPKISDFGMARIFGRDETEADTRKVVGTYGYMSPEYAMNGTFSMKSDVFSFGVLLLEIISGKRNKGFCDSDSNLNLLGCVWRNWKEGQGLEIVDRVIIDSSSPTFRPREILRCLQIGLLCVQERVEDRPMMSSVVLML |
| Gene3D: G3DSA:3.30.200.20 | 513-586 | no description | LEFEAVVTATEHFSDFNKVGKGGFGVVYKGRLVDGQEIAVKRLSEMSAQGTDEFMNEVRLIAKLQHNNLVRLLG |
| ProfileScan: PS50011 IPR000719
|
525-780 | PROTEIN_KINASE_DOM Protein kinase, catalytic domain
|
FSDFNKVGKGGFGVVYKGRLVDGQEIAVKRLSEMSAQGTDEFMNEVRLIAKLQHNNLVRLLGCCVYEGEKILIYEYLENLSLDSHLFDETRSCMLNWQMRFDIINGIARGLLYLHQDSRFRIIHRDLKASNVLLDKDMTPKISDFGMARIFGRDETEADTRKVVGTYGYMSPEYAMNGTFSMKSDVFSFGVLLLEIISGKRNKGFCDSDSNLNLLGCVWRNWKEGQGLEIVDRVIIDSSSPTFRPREILRCLQIGL |
| HMMSmart: SM00220 IPR002290
|
525-792 | Serine/Threonine protein kinases, catalytic Serine/threonine- / dual-specificity protein kinas
|
FSDFNKVGKGGFGVVYKGRLVDGQEIAVKRLSEMSAQGTDEFMNEVRLIAKLQHNNLVRLLGCCVYEGEKILIYEYLENLSLDSHLFDETRSCMLNWQMRFDIINGIARGLLYLHQDSRFRIIHRDLKASNVLLDKDMTPKISDFGMARIFGRDETEADTRKVVGTYGYMSPEYAMNGTFSMKSDVFSFGVLLLEIISGKRNKGFCDSDSNLNLLGCVWRNWKEGQGLEIVDRVIIDSSSPTFRPREILRCLQIGLLCVQERVEDRPM |
| HMMSmart: SM00219 IPR020635
|
525-800 | Tyrosine kinase, catalytic domain Tyrosine-protein kinase, catalytic domain
|
FSDFNKVGKGGFGVVYKGRLVDGQEIAVKRLSEMSAQGTDEFMNEVRLIAKLQHNNLVRLLGCCVYEGEKILIYEYLENLSLDSHLFDETRSCMLNWQMRFDIINGIARGLLYLHQDSRFRIIHRDLKASNVLLDKDMTPKISDFGMARIFGRDETEADTRKVVGTYGYMSPEYAMNGTFSMKSDVFSFGVLLLEIISGKRNKGFCDSDSNLNLLGCVWRNWKEGQGLEIVDRVIIDSSSPTFRPREILRCLQIGLLCVQERVEDRPMMSSVVLML |
| HMMPfam: PF07714 IPR001245
|
529-799 | Pkinase_Tyr Serine-threonine/tyrosine-protein kinase
|
NKVGKGGFGVVYKGRLVDGQEIAVKRLSEMSAQGTDEFMNEVRLIAKLQHNNLVRLLGCCVYEGEKILIYEYLENLSLDSHLFDETRSCMLNWQMRFDIINGIARGLLYLHQDSRFRIIHRDLKASNVLLDKDMTPKISDFGMARIFGRDETEADTRKVVGTYGYMSPEYAMNGTFSMKSDVFSFGVLLLEIISGKRNKGFCDSDSNLNLLGCVWRNWKEGQGLEIVDRVIIDSSSPTFRPREILRCLQIGLLCVQERVEDRPMMSSVVLM |
| Seg: seg | 530-542 | seg | KVGKGGFGVVYKG |
| PatternScan: PS00107 IPR017441
|
531-553 | PROTEIN_KINASE_ATP Protein kinase, ATP binding site
|
VGKGGFGVVYKGRLVDGQEIAVK |
| Gene3D: G3DSA:1.10.510.10 | 587-726 | no description | CCVYEGEKILIYEYLENLSLDSHLFDETRSCMLNWQMRFDIINGIARGLLYLHQDSRFRIIHRDLKASNVLLDKDMTPKISDFGMARIFGRDETEADTRKVVGTYGYMSPEYAMNGTFSMKSDVFSFGVLLLEIISGKRN |
| PatternScan: PS00108 IPR008271
|
646-658 | PROTEIN_KINASE_ST Serine/threonine-protein kinase, active site
|
IIHRDLKASNVLL |
| HMMPfam: PF11883 IPR021820
|
802-850 | DUF3403 S-locus receptor kinase, C-terminal
|
SETALIPQPKQPGYCVSQSSLETYSSWSKLRDDENWTVNQITMSIIDAR |
List of Contributions
There has not been any contribution yet.
