PRGDB00067485 (Bol.19480)

Bol.19480
Gene Type	Putative_R-Genes,_predicted_from_NCBI_UniGene
GenBank	308606684 (DK528011)
Gene Class	Unknown
Domain Type	Ser-Thr Kinase
Gene Species	Brassica oleracea
	Comment?

DK528011 full-length kale cDNA library (seedlings) Brassica oleracea var. acephala cDNA clone KALE-033J15 3', mRNA sequence

DNA Sequence

ATAAGGGGATTTACCGAACGGACAGGAGATAGCCGTGAAGAGATAGTAAGTGGTTCAGGACAAGGAGATACAGAGTTTAAGAATGAGGTCTCGCTCTTGACAAGACTCAACATAAGAACTTGGTAAGCTTCTTGGGTCTGTCATGAAGGAGATGAAGAGATCTGTCTACGAGCTCGTGCCGAATTCTAGTCTTGATCATTTTATCTTTGATAAGGAGAAGCGTTCACTTCTTACATGGGAGGTGAGGTTCAAGATTATAGAAGGCGTTGCTCGAGGTCTACTTTATCTCCATGAAGATTCGCAGTTGAAGATTATTCACCGAGACTTGAAGGCAAGCAACATCCTTTTAGATGCAGAGATGAACCCTAAAGTTGCAGACTTTGGGACTGCGAGGTTGTTCGAAGCTGATGAGACTCGAGCTGAAACAAGACGAATAGCTGGAACCCGTGGATATATGGCTCCGGAATACCTGAATCATGGGCAAATCTCCACTAAATCGGACGTTTTTAGCTTTGGTGTTATGCTTCTAGAGATGATTAGTGGTGAAAGAAACAATAGCTTCGAAGGAGAAGGACTTGCAGCATTTACATGGAAGAGGTGGGTTGAAGGAAAGCCTGAGACCGTTATTGATCCTTTACTGATGAAAAATCCGAGAAACGAGATCATCAAGTTGATCCAGATTGGTTTATTGTGCGTTCAGGAGAATGCGGCAAAGAGACCAACCATGAGCTCTGTAATAGTTTGGTTTGGCAGTGAGACTATCATCATTCCTTTACCTAGGGCTCCTGCTTTCACTAGGGATCAATCCCAATCTGAAAATAGTAAAATGTCAATGAACAATAACATATTCACAG

Protein sequences

Name	Description	Sequence
Bol.19480	translated coding region predicted by ESTScan from UniGene Bol.19480	IRGFTERTGDSREEIVSGSGQGDTEFKNEVSLLTRLNKELGKLLGSVMKEMKRSVYELVPNSSLDHFIFDKEKRSLLTWEVRFKIIEGVARGLLYLHEDSQLKIIHRDLKASNILLDAEMNPKVADFGTARLFEADETRAETRRIAGTRGYMAPEYLNHGQISTKSDVFSFGVMLLEMISGERNNSFEGEGLAAFTWKRWVEGKPETVIDPLLMKNPRNEIIKLIQIGLLCVQENAAKRPTMSSVIVWFGSETIIIPLPRAPAFTRDQSQSENSKMSMNNNIFTX

Domains

Domain	Start-End	Description	Sequence
ProfileScan: PS50011 IPR000719	1-254	PROTEIN_KINASE_DOM Protein kinase, catalytic domain	IRGFTERTGDSREEIVSGSGQGDTEFKNEVSLLTRLNKELGKLLGSVMKEMKRSVYELVPNSSLDHFIFDKEKRSLLTWEVRFKIIEGVARGLLYLHEDSQLKIIHRDLKASNILLDAEMNPKVADFGTARLFEADETRAETRRIAGTRGYMAPEYLNHGQISTKSDVFSFGVMLLEMISGERNNSFEGEGLAAFTWKRWVEGKPETVIDPLLMKNPRNEIIKLIQIGLLCVQENAAKRPTMSSVIVWFGSETI
HMMSmart: SM00220 IPR002290	13-249	Serine/Threonine protein kinases, catalytic Serine/threonine- / dual-specificity protein kinas	EEIVSGSGQGDTEFKNEVSLLTRLNKELGKLLGSVMKEMKRSVYELVPNSSLDHFIFDKEKRSLLTWEVRFKIIEGVARGLLYLHEDSQLKIIHRDLKASNILLDAEMNPKVADFGTARLFEADETRAETRRIAGTRGYMAPEYLNHGQISTKSDVFSFGVMLLEMISGERNNSFEGEGLAAFTWKRWVEGKPETVIDPLLMKNPRNEIIKLIQIGLLCVQENAAKRPTMSSVIVWF
HMMSmart: SM00219 IPR020635	14-249	Tyrosine kinase, catalytic domain Tyrosine-protein kinase, catalytic domain	EIVSGSGQGDTEFKNEVSLLTRLNKELGKLLGSVMKEMKRSVYELVPNSSLDHFIFDKEKRSLLTWEVRFKIIEGVARGLLYLHEDSQLKIIHRDLKASNILLDAEMNPKVADFGTARLFEADETRAETRRIAGTRGYMAPEYLNHGQISTKSDVFSFGVMLLEMISGERNNSFEGEGLAAFTWKRWVEGKPETVIDPLLMKNPRNEIIKLIQIGLLCVQENAAKRPTMSSVIVWF
HMMPanther: PTHR24420:SF430	19-282	SUBFAMILY NOT NAMED,SUBFAMILY NOT NAMED	SGQGDTEFKNEVSLLTRLNKELGKLLGSVMKEMKRSVYELVPNSSLDHFIFDKEKRSLLTWEVRFKIIEGVARGLLYLHEDSQLKIIHRDLKASNILLDAEMNPKVADFGTARLFEADETRAETRRIAGTRGYMAPEYLNHGQISTKSDVFSFGVMLLEMISGERNNSFEGEGLAAFTWKRWVEGKPETVIDPLLMKNPRNEIIKLIQIGLLCVQENAAKRPTMSSVIVWFGSETIIIPLPRAPAFTRDQSQSENSKMSMNNNI
HMMPanther: PTHR24420	19-282	FAMILY NOT NAMED,FAMILY NOT NAMED	SGQGDTEFKNEVSLLTRLNKELGKLLGSVMKEMKRSVYELVPNSSLDHFIFDKEKRSLLTWEVRFKIIEGVARGLLYLHEDSQLKIIHRDLKASNILLDAEMNPKVADFGTARLFEADETRAETRRIAGTRGYMAPEYLNHGQISTKSDVFSFGVMLLEMISGERNNSFEGEGLAAFTWKRWVEGKPETVIDPLLMKNPRNEIIKLIQIGLLCVQENAAKRPTMSSVIVWFGSETIIIPLPRAPAFTRDQSQSENSKMSMNNNI
superfamily: SSF56112 IPR011009	19-272	Protein kinase-like (PK-like) Protein kinase-like domain	SGQGDTEFKNEVSLLTRLNKELGKLLGSVMKEMKRSVYELVPNSSLDHFIFDKEKRSLLTWEVRFKIIEGVARGLLYLHEDSQLKIIHRDLKASNILLDAEMNPKVADFGTARLFEADETRAETRRIAGTRGYMAPEYLNHGQISTKSDVFSFGVMLLEMISGERNNSFEGEGLAAFTWKRWVEGKPETVIDPLLMKNPRNEIIKLIQIGLLCVQENAAKRPTMSSVIVWFGSETIIIPLPRAPAFTRDQSQSE
HMMPfam: PF00069 IPR017442	28-245	Pkinase,Ser-thr Serine/threonine-protein kinase-like domain	NEVSLLTRLNKELGKLLGSVMKEMKRSVYELVPNSSLDHFIFDKEKRSLLTWEVRFKIIEGVARGLLYLHEDSQLKIIHRDLKASNILLDAEMNPKVADFGTARLFEADETRAETRRIAGTRGYMAPEYLNHGQISTKSDVFSFGVMLLEMISGERNNSFEGEGLAAFTWKRWVEGKPETVIDPLLMKNPRNEIIKLIQIGLLCVQENAAKRPTMSSV
Gene3D: G3DSA:1.10.510.10	62-254	no description	SSLDHFIFDKEKRSLLTWEVRFKIIEGVARGLLYLHEDSQLKIIHRDLKASNILLDAEMNPKVADFGTARLFEADETRAETRRIAGTRGYMAPEYLNHGQISTKSDVFSFGVMLLEMISGERNNSFEGEGLAAFTWKRWVEGKPETVIDPLLMKNPRNEIIKLIQIGLLCVQENAAKRPTMSSVIVWFGSETI
PatternScan: PS00108 IPR008271	104-116	PROTEIN_KINASE_ST Serine/threonine-protein kinase, active site	IIHRDLKASNILL

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Analyses

Blast

Blast matches against Reference R-Genes. Show