PRGDB00067873 (Cca.5708)
Cca.5708 | |
---|---|
Gene Type | Putative_R-Genes,_predicted_from_NCBI_UniGene |
GenBank | 82473178 (DV693350) |
Gene Class | Unknown |
Domain Type | |
Gene Species | Coffea canephora |
DNA Sequence
ATCGCATCCTTTAAATCCTAATTGGACAATTCAGTTTGTTGTGGATTGCCCAACAGCAGCGTCTTAACTTCAATGTGGATGTCATTGAAAGCGAATGGGGTCAAGGAGCAAACCTTGATATTTTGGCCTCAAAACTAGCAGAAGATACAGCACATACTATCAAGGCCATCTGCATCGTGCACAATGAAACAGCAACCGGTGTAACCAACAACTTGGCTACTGTTAGAAAGATTCTTGATCACTACAACCATCCAGCACTCTTTGTTGTTGATGGTGTTTCCTCCATTTGTGCACTTGATTTCCGCATGGATGAATGGGGAGTAGATGTGGCACTAACTGGCTCTCAGAAAGCTCTTTCTCTCCCAACTGGCATAGGAATCGTTTGTGCAAGCCCCAAGGCTCTTGAGGCTTCCAAAACAGCAAAATCTGTTAGAGTCTTCTTTGACTGGAAGGACTACCTGAAGGTCTATAAGTTGGGAACATATTGGCCATACACTCCATCCATTCATCTTCTATATGGTCTAAGAGCAGCTTTGGATCTCATATTTGAGGAAGGACTTGAGAATGTATTTGCCAGGCATGCTCGCTTAGCCAAAGCAACAAGACTTGCTATGGAAGCATGGGGCTTGAAAAATTGCACCCAAAAGGAGGAATGGTACAGTGATACAGTCACTGCTGTGCTTGTTCCTCCTAACATTGACAGTTCAGAAATTGTTAGAAGGGCCTGGAAGACATACAACTTAAGCTTGGGTCTGGGGCTTAACAAAGTTGCTGGAAAGGTTTTTAGAATAGGGCAT
Protein sequences
Name | Description | Sequence |
---|---|---|
Cca.5708 | translated coding region predicted by ESTScan from UniGene Cca.5708 | XSHPLNPNWTIQFVVDCPTAALNFNVDVIESEWGQGANLDILASKLAEDTAHTIKAICIVHNETATGVTNNLATVRKILDHYNHPALFVVDGVSSICALDFRMDEWGVDVALTGSQKALSLPTGIGIVCASPKALEASKTAKSVRVFFDWKDYLKVYKLGTYWPYTPSIHLLYGLRAALDLIFEEGLENVFARHARLAKATRLAMEAWGLKNCTQKEEWYSDTVTAVLVPPNIDSSEIVRRAWKTYNLSLGLGLNKVAGKVFRIGH |
Domains
Domain | Start-End | Description | Sequence
|
---|---|---|---|
HMMPanther: PTHR21152:SF7 | 19-266 | SUBFAMILY NOT NAMED,SUBFAMILY NOT NAMED | TAALNFNVDVIESEWGQGANLDILASKLAEDTAHTIKAICIVHNETATGVTNNLATVRKILDHYNHPALFVVDGVSSICALDFRMDEWGVDVALTGSQKALSLPTGIGIVCASPKALEASKTAKSVRVFFDWKDYLKVYKLGTYWPYTPSIHLLYGLRAALDLIFEEGLENVFARHARLAKATRLAMEAWGLKNCTQKEEWYSDTVTAVLVPPNIDSSEIVRRAWKTYNLSLGLGLNKVAGKVFRIGH |
HMMPanther: PTHR21152 | 19-266 | FAMILY NOT NAMED,AMINOTRANSFERASE CLASS V | TAALNFNVDVIESEWGQGANLDILASKLAEDTAHTIKAICIVHNETATGVTNNLATVRKILDHYNHPALFVVDGVSSICALDFRMDEWGVDVALTGSQKALSLPTGIGIVCASPKALEASKTAKSVRVFFDWKDYLKVYKLGTYWPYTPSIHLLYGLRAALDLIFEEGLENVFARHARLAKATRLAMEAWGLKNCTQKEEWYSDTVTAVLVPPNIDSSEIVRRAWKTYNLSLGLGLNKVAGKVFRIGH |
superfamily: SSF53383 IPR015424
|
20-266 | PLP-dependent transferases Pyridoxal phosphate-dependent transferase, major d
|
AALNFNVDVIESEWGQGANLDILASKLAEDTAHTIKAICIVHNETATGVTNNLATVRKILDHYNHPALFVVDGVSSICALDFRMDEWGVDVALTGSQKALSLPTGIGIVCASPKALEASKTAKSVRVFFDWKDYLKVYKLGTYWPYTPSIHLLYGLRAALDLIFEEGLENVFARHARLAKATRLAMEAWGLKNCTQKEEWYSDTVTAVLVPPNIDSSEIVRRAWKTYNLSLGLGLNKVAGKVFRIGH |
Gene3D: G3DSA:3.40.640.10 IPR015421
|
22-173 | no description Pyridoxal phosphate-dependent transferase, major r
|
LNFNVDVIESEWGQGANLDILASKLAEDTAHTIKAICIVHNETATGVTNNLATVRKILDHYNHPALFVVDGVSSICALDFRMDEWGVDVALTGSQKALSLPTGIGIVCASPKALEASKTAKSVRVFFDWKDYLKVYKLGTYWPYTPSIHLLY |
HMMPfam: PF00266 IPR000192
|
22-239 | Aminotran_5 Aminotransferase, class V/Cysteine desulfurase
|
LNFNVDVIESEWGQGANLDILASKLAEDTAHTIKAICIVHNETATGVTNNLATVRKILDHYNHPALFVVDGVSSICALDFRMDEWGVDVALTGSQKALSLPTGIGIVCASPKALEASKTAKSVRVFFDWKDYLKVYKLGTYWPYTPSIHLLYGLRAALDLIFEEGLENVFARHARLAKATRLAMEAWGLKNCTQKEEWYSDTVTAVLVPPNIDSSEIV |
PatternScan: PS00595 IPR020578
|
108-128 | AA_TRANSFER_CLASS_5 Aminotransferase class-V pyridoxal-phosphate bindi
|
VDVALTGSQKALSLPTGIGIV |
Gene3D: G3DSA:3.90.1150.10 IPR015422
|
174-266 | no description Pyridoxal phosphate-dependent transferase, major r
|
GLRAALDLIFEEGLENVFARHARLAKATRLAMEAWGLKNCTQKEEWYSDTVTAVLVPPNIDSSEIVRRAWKTYNLSLGLGLNKVAGKVFRIGH |
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