PRGDB00067873 (Cca.5708)

Cca.5708
Gene Type	Putative_R-Genes,_predicted_from_NCBI_UniGene
GenBank	82473178 (DV693350)
Gene Class	Unknown
Domain Type
Gene Species	Coffea canephora
	Comment?

CGN-37477 Leaf Coffea canephora cDNA clone cccl22b16 5', mRNA sequence

DNA Sequence

ATCGCATCCTTTAAATCCTAATTGGACAATTCAGTTTGTTGTGGATTGCCCAACAGCAGCGTCTTAACTTCAATGTGGATGTCATTGAAAGCGAATGGGGTCAAGGAGCAAACCTTGATATTTTGGCCTCAAAACTAGCAGAAGATACAGCACATACTATCAAGGCCATCTGCATCGTGCACAATGAAACAGCAACCGGTGTAACCAACAACTTGGCTACTGTTAGAAAGATTCTTGATCACTACAACCATCCAGCACTCTTTGTTGTTGATGGTGTTTCCTCCATTTGTGCACTTGATTTCCGCATGGATGAATGGGGAGTAGATGTGGCACTAACTGGCTCTCAGAAAGCTCTTTCTCTCCCAACTGGCATAGGAATCGTTTGTGCAAGCCCCAAGGCTCTTGAGGCTTCCAAAACAGCAAAATCTGTTAGAGTCTTCTTTGACTGGAAGGACTACCTGAAGGTCTATAAGTTGGGAACATATTGGCCATACACTCCATCCATTCATCTTCTATATGGTCTAAGAGCAGCTTTGGATCTCATATTTGAGGAAGGACTTGAGAATGTATTTGCCAGGCATGCTCGCTTAGCCAAAGCAACAAGACTTGCTATGGAAGCATGGGGCTTGAAAAATTGCACCCAAAAGGAGGAATGGTACAGTGATACAGTCACTGCTGTGCTTGTTCCTCCTAACATTGACAGTTCAGAAATTGTTAGAAGGGCCTGGAAGACATACAACTTAAGCTTGGGTCTGGGGCTTAACAAAGTTGCTGGAAAGGTTTTTAGAATAGGGCAT

Protein sequences

Name	Description	Sequence
Cca.5708	translated coding region predicted by ESTScan from UniGene Cca.5708	XSHPLNPNWTIQFVVDCPTAALNFNVDVIESEWGQGANLDILASKLAEDTAHTIKAICIVHNETATGVTNNLATVRKILDHYNHPALFVVDGVSSICALDFRMDEWGVDVALTGSQKALSLPTGIGIVCASPKALEASKTAKSVRVFFDWKDYLKVYKLGTYWPYTPSIHLLYGLRAALDLIFEEGLENVFARHARLAKATRLAMEAWGLKNCTQKEEWYSDTVTAVLVPPNIDSSEIVRRAWKTYNLSLGLGLNKVAGKVFRIGH

Domains

Domain	Start-End	Description	Sequence
HMMPanther: PTHR21152:SF7	19-266	SUBFAMILY NOT NAMED,SUBFAMILY NOT NAMED	TAALNFNVDVIESEWGQGANLDILASKLAEDTAHTIKAICIVHNETATGVTNNLATVRKILDHYNHPALFVVDGVSSICALDFRMDEWGVDVALTGSQKALSLPTGIGIVCASPKALEASKTAKSVRVFFDWKDYLKVYKLGTYWPYTPSIHLLYGLRAALDLIFEEGLENVFARHARLAKATRLAMEAWGLKNCTQKEEWYSDTVTAVLVPPNIDSSEIVRRAWKTYNLSLGLGLNKVAGKVFRIGH
HMMPanther: PTHR21152	19-266	FAMILY NOT NAMED,AMINOTRANSFERASE CLASS V	TAALNFNVDVIESEWGQGANLDILASKLAEDTAHTIKAICIVHNETATGVTNNLATVRKILDHYNHPALFVVDGVSSICALDFRMDEWGVDVALTGSQKALSLPTGIGIVCASPKALEASKTAKSVRVFFDWKDYLKVYKLGTYWPYTPSIHLLYGLRAALDLIFEEGLENVFARHARLAKATRLAMEAWGLKNCTQKEEWYSDTVTAVLVPPNIDSSEIVRRAWKTYNLSLGLGLNKVAGKVFRIGH
superfamily: SSF53383 IPR015424	20-266	PLP-dependent transferases Pyridoxal phosphate-dependent transferase, major d	AALNFNVDVIESEWGQGANLDILASKLAEDTAHTIKAICIVHNETATGVTNNLATVRKILDHYNHPALFVVDGVSSICALDFRMDEWGVDVALTGSQKALSLPTGIGIVCASPKALEASKTAKSVRVFFDWKDYLKVYKLGTYWPYTPSIHLLYGLRAALDLIFEEGLENVFARHARLAKATRLAMEAWGLKNCTQKEEWYSDTVTAVLVPPNIDSSEIVRRAWKTYNLSLGLGLNKVAGKVFRIGH
Gene3D: G3DSA:3.40.640.10 IPR015421	22-173	no description Pyridoxal phosphate-dependent transferase, major r	LNFNVDVIESEWGQGANLDILASKLAEDTAHTIKAICIVHNETATGVTNNLATVRKILDHYNHPALFVVDGVSSICALDFRMDEWGVDVALTGSQKALSLPTGIGIVCASPKALEASKTAKSVRVFFDWKDYLKVYKLGTYWPYTPSIHLLY
HMMPfam: PF00266 IPR000192	22-239	Aminotran_5 Aminotransferase, class V/Cysteine desulfurase	LNFNVDVIESEWGQGANLDILASKLAEDTAHTIKAICIVHNETATGVTNNLATVRKILDHYNHPALFVVDGVSSICALDFRMDEWGVDVALTGSQKALSLPTGIGIVCASPKALEASKTAKSVRVFFDWKDYLKVYKLGTYWPYTPSIHLLYGLRAALDLIFEEGLENVFARHARLAKATRLAMEAWGLKNCTQKEEWYSDTVTAVLVPPNIDSSEIV
PatternScan: PS00595 IPR020578	108-128	AA_TRANSFER_CLASS_5 Aminotransferase class-V pyridoxal-phosphate bindi	VDVALTGSQKALSLPTGIGIV
Gene3D: G3DSA:3.90.1150.10 IPR015422	174-266	no description Pyridoxal phosphate-dependent transferase, major r	GLRAALDLIFEEGLENVFARHARLAKATRLAMEAWGLKNCTQKEEWYSDTVTAVLVPPNIDSSEIVRRAWKTYNLSLGLGLNKVAGKVFRIGH

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Analyses

Blast

Blast matches against Reference R-Genes. Show