PRGDB00067936 (Ccl.4573)

Ccl.4573
Gene Type	Putative_R-Genes,_predicted_from_NCBI_UniGene
GenBank	63063904 (CX295050)
Gene Class	Unknown
Domain Type
Gene Species	Citrus clementina
	Comment?

C05068A09SK DroRLeaf1 Citrus clementina cDNA clone C05068A09, mRNA sequence

DNA Sequence

GAGGCACAACTTGTCTAAGTGAGAAAACTTCTTGATGAATACAGGCACCCGGCTCTTTTTCTCGTTGACGGGGTTTCCTCCATTTGTGCCATCGATTTCCGTATGGATGAATGGGGCATAGATGTGGCTCTAACTGGCTCTCAGAAAGCTCTTTCACTTCCTACTGGAATGGGGATTGTTTGTGCAAGCCCCAAAGCTCTAGAGGCATCCAAAACTGCAAAATCTGTCAGAGTTTTCTTTGATTGGAAAGACTACATAAAGTTTTACAATTTGGGAACATTTTGGCCATATACCCCTTCCATCCAACTGCTGTATGGGCTGCGAGCAGCTTTGGATCTGATTTTTGAGGAAGGGCTTGAAAATGTGATCGAAAGGCACCGTCGTTTGGGCAAAGCAACCAGGCTTGCGGTGGAGGCATGGGGATTAAAGAACTGCACCCAGAAAGAAGAATGGTTCAGTGACACCGTGACTGCTGTGATTGTTCCTCCACATATCAATAGTTCAGAAATTGTTAGAAGGGCATGGCAGAGATACAATCTAAGCTTAGGTCTGGGCCTTAACAAAGTTGCTGGTAAAGTATTTAGAATCGGGCATCTCGGCCACCTGAATGAGTTGCAATTGTTGGGCTGTCTCGCTGGTGTGGAGATGATACTAAAAGACGTGGGCTACCCGGTTAAGCTGGGGAGCGGGGTTGCAGCTGCTTCTGCATACCTACAGAACAACATTCCTATGAT

Protein sequences

Name	Description	Sequence
Ccl.4573	translated coding region predicted by ESTScan from UniGene Ccl.4573	EAQLVXVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPPHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDVGYPVKLGSGVAAASAYLQNNIPMX

Domains

Domain	Start-End	Description	Sequence
HMMPanther: PTHR21152:SF7	4-244	SUBFAMILY NOT NAMED,SUBFAMILY NOT NAMED	LVXVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPPHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDVGYPVKLGSGVAAASAYLQNNIPM
HMMPanther: PTHR21152	4-244	FAMILY NOT NAMED,AMINOTRANSFERASE CLASS V	LVXVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPPHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDVGYPVKLGSGVAAASAYLQNNIPM
superfamily: SSF53383 IPR015424	7-225	PLP-dependent transferases Pyridoxal phosphate-dependent transferase, major d	VRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPPHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDVGYPV
Gene3D: G3DSA:3.40.640.10 IPR015421	7-106	no description Pyridoxal phosphate-dependent transferase, major r	VRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYG
HMMPfam: PF00266 IPR000192	16-171	Aminotran_5 Aminotransferase, class V/Cysteine desulfurase	HPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPPHINSSEIV
PatternScan: PS00595 IPR020578	40-60	AA_TRANSFER_CLASS_5 Aminotransferase class-V pyridoxal-phosphate bindi	IDVALTGSQKALSLPTGMGIV
Gene3D: G3DSA:3.90.1150.10 IPR015422	107-231	no description Pyridoxal phosphate-dependent transferase, major r	LRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPPHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDVGYPVKLGSGV

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Analyses

Blast

Blast matches against Reference R-Genes. Show