PRGDB00067936 (Ccl.4573)
Ccl.4573 | |
---|---|
Gene Type | Putative_R-Genes,_predicted_from_NCBI_UniGene |
GenBank | 63063904 (CX295050) |
Gene Class | Unknown |
Domain Type | |
Gene Species | Citrus clementina |
DNA Sequence
GAGGCACAACTTGTCTAAGTGAGAAAACTTCTTGATGAATACAGGCACCCGGCTCTTTTTCTCGTTGACGGGGTTTCCTCCATTTGTGCCATCGATTTCCGTATGGATGAATGGGGCATAGATGTGGCTCTAACTGGCTCTCAGAAAGCTCTTTCACTTCCTACTGGAATGGGGATTGTTTGTGCAAGCCCCAAAGCTCTAGAGGCATCCAAAACTGCAAAATCTGTCAGAGTTTTCTTTGATTGGAAAGACTACATAAAGTTTTACAATTTGGGAACATTTTGGCCATATACCCCTTCCATCCAACTGCTGTATGGGCTGCGAGCAGCTTTGGATCTGATTTTTGAGGAAGGGCTTGAAAATGTGATCGAAAGGCACCGTCGTTTGGGCAAAGCAACCAGGCTTGCGGTGGAGGCATGGGGATTAAAGAACTGCACCCAGAAAGAAGAATGGTTCAGTGACACCGTGACTGCTGTGATTGTTCCTCCACATATCAATAGTTCAGAAATTGTTAGAAGGGCATGGCAGAGATACAATCTAAGCTTAGGTCTGGGCCTTAACAAAGTTGCTGGTAAAGTATTTAGAATCGGGCATCTCGGCCACCTGAATGAGTTGCAATTGTTGGGCTGTCTCGCTGGTGTGGAGATGATACTAAAAGACGTGGGCTACCCGGTTAAGCTGGGGAGCGGGGTTGCAGCTGCTTCTGCATACCTACAGAACAACATTCCTATGAT
Protein sequences
Name | Description | Sequence |
---|---|---|
Ccl.4573 | translated coding region predicted by ESTScan from UniGene Ccl.4573 | EAQLVXVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPPHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDVGYPVKLGSGVAAASAYLQNNIPMX |
Domains
Domain | Start-End | Description | Sequence
|
---|---|---|---|
HMMPanther: PTHR21152:SF7 | 4-244 | SUBFAMILY NOT NAMED,SUBFAMILY NOT NAMED | LVXVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPPHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDVGYPVKLGSGVAAASAYLQNNIPM |
HMMPanther: PTHR21152 | 4-244 | FAMILY NOT NAMED,AMINOTRANSFERASE CLASS V | LVXVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPPHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDVGYPVKLGSGVAAASAYLQNNIPM |
superfamily: SSF53383 IPR015424
|
7-225 | PLP-dependent transferases Pyridoxal phosphate-dependent transferase, major d
|
VRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPPHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDVGYPV |
Gene3D: G3DSA:3.40.640.10 IPR015421
|
7-106 | no description Pyridoxal phosphate-dependent transferase, major r
|
VRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYG |
HMMPfam: PF00266 IPR000192
|
16-171 | Aminotran_5 Aminotransferase, class V/Cysteine desulfurase
|
HPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPPHINSSEIV |
PatternScan: PS00595 IPR020578
|
40-60 | AA_TRANSFER_CLASS_5 Aminotransferase class-V pyridoxal-phosphate bindi
|
IDVALTGSQKALSLPTGMGIV |
Gene3D: G3DSA:3.90.1150.10 IPR015422
|
107-231 | no description Pyridoxal phosphate-dependent transferase, major r
|
LRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPPHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDVGYPVKLGSGV |
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