PRGDB00068158 (Csi.8546)
| Csi.8546 | |
|---|---|
| Gene Type | Putative_R-Genes,_predicted_from_NCBI_UniGene |
| GenBank | 55397860 (CV715162) |
| Gene Class | CNL |
| Domain Type | NBS, LRR, Others |
| Gene Species | Citrus sinensis |
DNA Sequence
AGGTCGAACAACAACGACCTCGAACCAGACGAACGAACCAGGTCGCAGGGTGGCTTGAAGATGTGCAAAATCTTGAAACTGAATTTGCCGAGCTGGAACGAGTCAGAGCTCAAGAAATGGATAGATTGTGCCTTGGAGGCCTCTGTTCCAAAAACTTCGTTTCAAGCTACAATTACGGGACTAAGGTGGTCGAGTTGACGGATCGAGTCATCAATTTAAAGAAAGACGGAGAAAAAATTGAAGTCGTTGTTGAGAAGGCGCCGGATGGTGCAGCAATTGAATTACCTCTTGATCACACAGTTGTTGGTCAAGAACTATTACTTGGTCAAGTTTGGAGATGTATCACTGATCAGGAAAAGAACAGGGGAATTATCGGCTTGTATGGTATAGGGGGAGTCGGCAAAACTACCCTTTTAAAACAAGTCAACAACAACTTCTGCCATCAACAGCATAATTTTGATGTTGTTATCTGGGCGGCTGTGTCAACACTTCAAGATGACATTGGAAAAAGGATTGGCTTTTCAGAAGACAGAAACTGGCAGGAAAAAAGTCTTCAAGACAAGGCTATGGACATCGCTAGCATTCTAAGCGGAAAGAAGTTTGTGTTGTTATTAGATGATATATGGGAGCCCATTGATTTAACACAGTTGGGTGTCCCTCTTCAAAATCTAAATGATGGGTCCAAAATAGTCTTGACAACTCATTCAGCTGGTTTTTGCGATCAAATGGACGCTAAAAAGTTGGAAG
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| Csi.8546 | translated coding region predicted by ESTScan from UniGene Csi.8546 | XVEQQRPRTRRTNQVAGWLEDVQNLETEFAELERVRAQEMDRLCLGGLCSKNFVSSYNYGTKVVELTDRVINLKKDGEKIEVVVEKAPDGAAIELPLDHTVVGQELLLGQVWRCITDQEKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAVSTLQDDIGKRIGFSEDRNWQEKSLQDKAMDIASILSGKKFVLLLDDIWEPIDLTQLGVPLQNLNDGSKIVLTTHSAGFCDQMDAKKLEX |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| HMMPanther: PTHR23155:SF108 | 2-227 | SUBFAMILY NOT NAMED,SUBFAMILY NOT NAMED | VEQQRPRTRRTNQVAGWLEDVQNLETEFAELERVRAQEMDRLCLGGLCSKNFVSSYNYGTKVVELTDRVINLKKDGEKIEVVVEKAPDGAAIELPLDHTVVGQELLLGQVWRCITDQEKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAVSTLQDDIGKRIGFSEDRNWQEKSLQDKAMDIASILSGKKFVLLLDDIWEPIDLTQLGVPLQNLNDG |
| HMMPanther: PTHR23155 | 2-227 | FAMILY NOT NAMED,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN | VEQQRPRTRRTNQVAGWLEDVQNLETEFAELERVRAQEMDRLCLGGLCSKNFVSSYNYGTKVVELTDRVINLKKDGEKIEVVVEKAPDGAAIELPLDHTVVGQELLLGQVWRCITDQEKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAVSTLQDDIGKRIGFSEDRNWQEKSLQDKAMDIASILSGKKFVLLLDDIWEPIDLTQLGVPLQNLNDG |
| Coil: coil | 15-43 | coiled-coil | VAGWLEDVQNLETEFAELERVRAQEMDRL |
| superfamily: SSF52540 | 94-244 | P-loop containing nucleoside triphosphate hydrolases | ELPLDHTVVGQELLLGQVWRCITDQEKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAVSTLQDDIGKRIGFSEDRNWQEKSLQDKAMDIASILSGKKFVLLLDDIWEPIDLTQLGVPLQNLNDGSKIVLTTHSAGFCDQMD |
| HMMPfam: PF00931 IPR002182
|
108-246 | NB-ARC,NBS NB-ARC
|
LGQVWRCITDQEKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAVSTLQDDIGKRIGFSEDRNWQEKSLQDKAMDIASILSGKKFVLLLDDIWEPIDLTQLGVPLQNLNDGSKIVLTTHSAGFCDQMDAK |
| Gene3D: G3DSA:3.40.50.300 | 116-244 | no description | TDQEKNRGIIGLYGIGGVGKTTLLKQVNNNFCHQQHNFDVVIWAAVSTLQDDIGKRIGFSEDRNWQEKSLQDKAMDIASILSGKKFVLLLDDIWEPIDLTQLGVPLQNLNDGSKIVLTTHSAGFCDQMD |
| Seg: seg | 123-134 | seg | GIIGLYGIGGVG |
| FPrintScan: PR00364 IPR000767
|
124-139 | DISEASERSIST Disease resistance protein
|
IIGLYGIGGVGKTTLL |
| FPrintScan: PR00364 IPR000767
|
195-209 | DISEASERSIST Disease resistance protein
|
ILSGKKFVLLLDDIW |
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