PRGDB00068323 (Ghi.144)
| Ghi.144 | |
|---|---|
| Gene Type | Putative_R-Genes,_predicted_from_NCBI_UniGene |
| GenBank | 78352962 (DT573236) |
| Gene Class | Unknown |
| Domain Type | Ser-Thr Kinase |
| Gene Species | Gossypium hirsutum |
DNA Sequence
AAAATTTACATTAACATTGACTAATGACCGTTTCTCAATTCTCCTTAAACCTAGTCCAACCATCGCCATTCTTTTCCTTCAAAATCAACCAAAATCATTTTTCATTTTCTCTCTTTTAAGCCCTGCTACGTCCTACCTTCTCCTGTTTCTCAACTCAAGAAATGGTGTAAATGATGTGATCTGGGAGAGGTTGGTGAGTGAGATATTGCAGAGAACGATATGAGTTGCGGTTGTTTTGGTGGATCAGTTGTTAAGCGGAGACAGAGCACCGCTCGGGCCACCGGCGGTATAGACGAGCAATTAATTCGGACAGTCAACCATTTCTCATACGATCAATTAAAATTAGCCACAGATGATTTTCATTCAAGCAATAAAATAGGTCGTGGAGGTTTTGGAACCGTTTACAAGGGAATTCTAAAAGATGGAACTGAAGTTGCTGTGAAGACACTTGCAGCACAATCGAAGCAGGGAGCTCATGAATTTTTGACGGAGATCAATACTATATCAAATGTCAAGCATCCGAACCTTGTAGAGCTGATCGGGTGTTGCATTCAAGGAGCGAATCGTATATTGGTCTATGAATACGTTGAAAATAAGAGTCTTGATAAAGTTTTATTAGACCAAAGGAGTACGAATATCCAACTGGACTGGAGCAAAAGATCTGCTATTTGCATGGGTATAGCTAGGGGTCTTGCTTTCCTTCATGAAGAACTTGTTCCACGTATCGTTCATAGAGACATCAAATCTAGTAACATACTTCTTGACAAAGACTTTAACCCTAAAATTGGAGATTTTGGGTTGGCTAAACTTTTTCCAGATAACATCACTCATATTAGTACCAGGATAGCACGAACAACTGGTTATTTGGCCCCGGAATATGCTTTGGGTGGTCAGTTAACCATGAAGGCTGACGTTTATA
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| Ghi.144 | translated coding region predicted by ESTScan from UniGene Ghi.144 | MSCGCFGGSVVKRRQSTARATGGIDEQLIRTVNHFSYDQLKLATDDFHSSNKIGRGGFGTVYKGILKDGTEVAVKTLAAQSKQGAHEFLTEINTISNVKHPNLVELIGCCIQGANRILVYEYVENKSLDKVLLDQRSTNIQLDWSKRSAICMGIARGLAFLHEELVPRIVHRDIKSSNILLDKDFNPKIGDFGLAKLFPDNITHISTRIARTTGYLAPEYALGGQLTMKADVYX |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| superfamily: SSF56112 IPR011009
|
19-233 | Protein kinase-like (PK-like) Protein kinase-like domain
|
RATGGIDEQLIRTVNHFSYDQLKLATDDFHSSNKIGRGGFGTVYKGILKDGTEVAVKTLAAQSKQGAHEFLTEINTISNVKHPNLVELIGCCIQGANRILVYEYVENKSLDKVLLDQRSTNIQLDWSKRSAICMGIARGLAFLHEELVPRIVHRDIKSSNILLDKDFNPKIGDFGLAKLFPDNITHISTRIARTTGYLAPEYALGGQLTMKADVY |
| Gene3D: G3DSA:3.30.200.20 | 30-109 | no description | RTVNHFSYDQLKLATDDFHSSNKIGRGGFGTVYKGILKDGTEVAVKTLAAQSKQGAHEFLTEINTISNVKHPNLVELIGC |
| HMMPanther: PTHR24420:SF679 | 35-233 | SUBFAMILY NOT NAMED | FSYDQLKLATDDFHSSNKIGRGGFGTVYKGILKDGTEVAVKTLAAQSKQGAHEFLTEINTISNVKHPNLVELIGCCIQGANRILVYEYVENKSLDKVLLDQRSTNIQLDWSKRSAICMGIARGLAFLHEELVPRIVHRDIKSSNILLDKDFNPKIGDFGLAKLFPDNITHISTRIARTTGYLAPEYALGGQLTMKADVY |
| HMMPanther: PTHR24420 | 35-233 | FAMILY NOT NAMED,FAMILY NOT NAMED | FSYDQLKLATDDFHSSNKIGRGGFGTVYKGILKDGTEVAVKTLAAQSKQGAHEFLTEINTISNVKHPNLVELIGCCIQGANRILVYEYVENKSLDKVLLDQRSTNIQLDWSKRSAICMGIARGLAFLHEELVPRIVHRDIKSSNILLDKDFNPKIGDFGLAKLFPDNITHISTRIARTTGYLAPEYALGGQLTMKADVY |
| ProfileScan: PS50011 IPR000719
|
47-234 | PROTEIN_KINASE_DOM Protein kinase, catalytic domain
|
FHSSNKIGRGGFGTVYKGILKDGTEVAVKTLAAQSKQGAHEFLTEINTISNVKHPNLVELIGCCIQGANRILVYEYVENKSLDKVLLDQRSTNIQLDWSKRSAICMGIARGLAFLHEELVPRIVHRDIKSSNILLDKDFNPKIGDFGLAKLFPDNITHISTRIARTTGYLAPEYALGGQLTMKADVYX |
| HMMSmart: SM00220 IPR002290
|
47-234 | Serine/Threonine protein kinases, catalytic Serine/threonine- / dual-specificity protein kinas
|
FHSSNKIGRGGFGTVYKGILKDGTEVAVKTLAAQSKQGAHEFLTEINTISNVKHPNLVELIGCCIQGANRILVYEYVENKSLDKVLLDQRSTNIQLDWSKRSAICMGIARGLAFLHEELVPRIVHRDIKSSNILLDKDFNPKIGDFGLAKLFPDNITHISTRIARTTGYLAPEYALGGQLTMKADVYX |
| HMMSmart: SM00219 IPR020635
|
47-232 | Tyrosine kinase, catalytic domain Tyrosine-protein kinase, catalytic domain
|
FHSSNKIGRGGFGTVYKGILKDGTEVAVKTLAAQSKQGAHEFLTEINTISNVKHPNLVELIGCCIQGANRILVYEYVENKSLDKVLLDQRSTNIQLDWSKRSAICMGIARGLAFLHEELVPRIVHRDIKSSNILLDKDFNPKIGDFGLAKLFPDNITHISTRIARTTGYLAPEYALGGQLTMKADV |
| HMMPfam: PF00069 IPR017442
|
48-233 | Pkinase,Ser-thr Serine/threonine-protein kinase-like domain
|
HSSNKIGRGGFGTVYKGILKDGTEVAVKTLAAQSKQGAHEFLTEINTISNVKHPNLVELIGCCIQGANRILVYEYVENKSLDKVLLDQRSTNIQLDWSKRSAICMGIARGLAFLHEELVPRIVHRDIKSSNILLDKDFNPKIGDFGLAKLFPDNITHISTRIARTTGYLAPEYALGGQLTMKADVY |
| PatternScan: PS00107 IPR017441
|
53-75 | PROTEIN_KINASE_ATP Protein kinase, ATP binding site
|
IGRGGFGTVYKGILKDGTEVAVK |
| Gene3D: G3DSA:1.10.510.10 | 110-233 | no description | CIQGANRILVYEYVENKSLDKVLLDQRSTNIQLDWSKRSAICMGIARGLAFLHEELVPRIVHRDIKSSNILLDKDFNPKIGDFGLAKLFPDNITHISTRIARTTGYLAPEYALGGQLTMKADVY |
| PatternScan: PS00108 IPR008271
|
169-181 | PROTEIN_KINASE_ST Serine/threonine-protein kinase, active site
|
IVHRDIKSSNILL |
List of Contributions
There has not been any contribution yet.
