PRGDB00068332 (Ghi.1244)
| Ghi.1244 | |
|---|---|
| Gene Type | Putative_R-Genes,_predicted_from_NCBI_UniGene |
| GenBank | 78352400 (DT572674) |
| Gene Class | Unknown |
| Domain Type | Ser-Thr Kinase |
| Gene Species | Gossypium hirsutum |
DNA Sequence
CTTTTATCCTACGCACCACTCGATTCTCTTAAGGTGCGCACCTTTCGCCGGCGTCGTCGTTTCGGATCTCCTGCTCAAGTAATACCGACAGTCGGCGACCAAATTTTAGGAGACATAACATTTTATACTAAATTAGCAACAATTCTCAAGGGATTGAACCATGAGTTGTTTTGGCTGTTGTGAAGAGGACAATATCCACAAAACCACTGATAATGGAGGCCAACACATGGTTAAAATTTCAGCAGGAAGCGATGGAGTTTACCATTCATCTGAAACTGCATCAAAGAGTGCTCAAACTTTGAAGGTTCAGCCTATTGAAGTCCCTGATATTCCGGTAGATGAATTGAAAGAAGTCACAGATAATTTTGGTGCAAATTCTTTGATTGGAGAAGGCTCATATGGTAGAGTCTACTATGGAGTTCTTAAAAGTAGGCAGGCTGCAGCAATCAAAAAGTTAGATGCCAGCAAGCAACCTGATGATGAGTTTTTAGCCCAGGTTTCCCTGGCATCTAGGTTGAAGCATGAAAACTTTGTTCAATTGCTTGGTTACTGTGTTGATGGGAGCTACCGTATTCTTGCTTATGAATTTGCATCTAATGGATCGTTGCATGATATTCTCCACGGGAGAAAAGGTGTTAAGGGATCTCAGCCAGGTCCTGTTTTGACATGGGCACAAAGAGTAAAAATTGCTGTAGGAGCTGCAAAAGGGCTTGAGTACTTACATGAGAAGGCTGATCCTCACATCATTCATCGTGACATTAAGTCCAGCAATGTGCTAATATTTGATGACGATGTTGCTAAGATTGCAGACTTTGATTTATCTAATCAGGCTCCTGATATGGCAGCTCGTCTTCATTCCACTCGTGTACTTG
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| Ghi.1244 | translated coding region predicted by ESTScan from UniGene Ghi.1244 | MSCFGCCEEDNIHKTTDNGGQHMVKISAGSDGVYHSSETASKSAQTLKVQPIEVPDIPVDELKEVTDNFGANSLIGEGSYGRVYYGVLKSRQAAAIKKLDASKQPDDEFLAQVSLASRLKHENFVQLLGYCVDGSYRILAYEFASNGSLHDILHGRKGVKGSQPGPVLTWAQRVKIAVGAAKGLEYLHEKADPHIIHRDIKSSNVLIFDDDVAKIADFDLSNQAPDMAARLHSTRVLX |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| HMMPanther: PTHR24420:SF870 | 45-237 | SUBFAMILY NOT NAMED | QTLKVQPIEVPDIPVDELKEVTDNFGANSLIGEGSYGRVYYGVLKSRQAAAIKKLDASKQPDDEFLAQVSLASRLKHENFVQLLGYCVDGSYRILAYEFASNGSLHDILHGRKGVKGSQPGPVLTWAQRVKIAVGAAKGLEYLHEKADPHIIHRDIKSSNVLIFDDDVAKIADFDLSNQAPDMAARLHSTRVL |
| HMMPanther: PTHR24420 | 45-237 | FAMILY NOT NAMED,FAMILY NOT NAMED | QTLKVQPIEVPDIPVDELKEVTDNFGANSLIGEGSYGRVYYGVLKSRQAAAIKKLDASKQPDDEFLAQVSLASRLKHENFVQLLGYCVDGSYRILAYEFASNGSLHDILHGRKGVKGSQPGPVLTWAQRVKIAVGAAKGLEYLHEKADPHIIHRDIKSSNVLIFDDDVAKIADFDLSNQAPDMAARLHSTRVL |
| Gene3D: G3DSA:3.30.200.20 | 54-129 | no description | VPDIPVDELKEVTDNFGANSLIGEGSYGRVYYGVLKSRQAAAIKKLDASKQPDDEFLAQVSLASRLKHENFVQLLG |
| superfamily: SSF56112 IPR011009
|
55-235 | Protein kinase-like (PK-like) Protein kinase-like domain
|
PDIPVDELKEVTDNFGANSLIGEGSYGRVYYGVLKSRQAAAIKKLDASKQPDDEFLAQVSLASRLKHENFVQLLGYCVDGSYRILAYEFASNGSLHDILHGRKGVKGSQPGPVLTWAQRVKIAVGAAKGLEYLHEKADPHIIHRDIKSSNVLIFDDDVAKIADFDLSNQAPDMAARLHSTR |
| ProfileScan: PS50011 IPR000719
|
69-238 | PROTEIN_KINASE_DOM Protein kinase, catalytic domain
|
FGANSLIGEGSYGRVYYGVLKSRQAAAIKKLDASKQPDDEFLAQVSLASRLKHENFVQLLGYCVDGSYRILAYEFASNGSLHDILHGRKGVKGSQPGPVLTWAQRVKIAVGAAKGLEYLHEKADPHIIHRDIKSSNVLIFDDDVAKIADFDLSNQAPDMAARLHSTRVLX |
| HMMSmart: SM00220 IPR002290
|
69-238 | Serine/Threonine protein kinases, catalytic Serine/threonine- / dual-specificity protein kinas
|
FGANSLIGEGSYGRVYYGVLKSRQAAAIKKLDASKQPDDEFLAQVSLASRLKHENFVQLLGYCVDGSYRILAYEFASNGSLHDILHGRKGVKGSQPGPVLTWAQRVKIAVGAAKGLEYLHEKADPHIIHRDIKSSNVLIFDDDVAKIADFDLSNQAPDMAARLHSTRVLX |
| HMMSmart: SM00219 IPR020635
|
69-237 | Tyrosine kinase, catalytic domain Tyrosine-protein kinase, catalytic domain
|
FGANSLIGEGSYGRVYYGVLKSRQAAAIKKLDASKQPDDEFLAQVSLASRLKHENFVQLLGYCVDGSYRILAYEFASNGSLHDILHGRKGVKGSQPGPVLTWAQRVKIAVGAAKGLEYLHEKADPHIIHRDIKSSNVLIFDDDVAKIADFDLSNQAPDMAARLHSTRVL |
| HMMPfam: PF07714 IPR001245
|
73-224 | Pkinase_Tyr Serine-threonine/tyrosine-protein kinase
|
SLIGEGSYGRVYYGVLKSRQAAAIKKLDASKQPDDEFLAQVSLASRLKHENFVQLLGYCVDGSYRILAYEFASNGSLHDILHGRKGVKGSQPGPVLTWAQRVKIAVGAAKGLEYLHEKADPHIIHRDIKSSNVLIFDDDVAKIADFDLSNQA |
| PatternScan: PS00107 IPR017441
|
75-98 | PROTEIN_KINASE_ATP Protein kinase, ATP binding site
|
IGEGSYGRVYYGVLKSRQAAAIKK |
| Gene3D: G3DSA:1.10.510.10 | 130-227 | no description | YCVDGSYRILAYEFASNGSLHDILHGRKGVKGSQPGPVLTWAQRVKIAVGAAKGLEYLHEKADPHIIHRDIKSSNVLIFDDDVAKIADFDLSNQAPDM |
| PatternScan: PS00108 IPR008271
|
195-207 | PROTEIN_KINASE_ST Serine/threonine-protein kinase, active site
|
IIHRDIKSSNVLI |
List of Contributions
There has not been any contribution yet.
