PRGDB00068418 (Ghi.6818)

Ghi.6818
Gene Type	Putative_R-Genes,_predicted_from_NCBI_UniGene
GenBank	109853316 (DW482295)
Gene Class	Unknown
Domain Type
Gene Species	Gossypium hirsutum
	Comment?

GH_RMIRS_035_F02_R Cotton Normalized Library random primed Gossypium hirsutum cDNA, mRNA sequence

DNA Sequence

ATCAGGCAGAGGACGAGACAATGCCCCCTATTGTCTCGTTCTGCGATGGGGATGTTATTTTGCAGATAAGCAGATGCAGCAGCAACTCCACTTCCAAGCTTAACTGGGTATCCAACATCTTTCAGTATCATCTCCACACCAGCTAAACAACCCAGCAGTTGCAACTCGTTTAGGTTTCCAAGATGTCCTATTCTGAAAACTTTTCCTGCCACTTTGTTAAGGCCAAGACCTAAGCTCAAATTGTATCTCTTCCATGCCCGTTTAATGATTTCCGAACTATCAATATATGGTGGAACAAGCACCGCCGTCACCGTGTCACTGAACCATTCCTCCTTTTGTGTGCAATTCTTCAAGCCCCAAGCTTCCACTGCAAGCCTTGTTGCTTTGCCTAAACGACTATGCCTTTCAATGACATTGTCAAGTCCTTCCTCAAAAATAAGGTCCAAAGCTGCTCTTAGTCCATACAAGAGTTGAATTGAAGGAGTGTAAGGCCAAAATGTTCCTAATTTGTAAAACTTAAGGTAATCGTTCCAATCGAAGAAAACCCGGACTGATTTCGCGGTTTTGGTCGCCTCGAGAGCTTTCGGGCTAGCGCAAACAATACCGATCCCGGTTGGAAGAGAAAGCGCCTTTTGCGAGCCGGTTAAGGCTACGTCAACTCCCCATTCATCCATACGGAAATCGAGGGCACAAATCGAGGAAACTCCATCGACGAGAAGCAGTGCTGGGTGCCCGTAATGATCT

Protein sequences

Name	Description	Sequence
Ghi.6818	translated coding region predicted by ESTScan from UniGene Ghi.6818	XDHYGHPALLLVDGVSSICALDFRMDEWGVDVALTGSQKALSLPTGIGIVCASPKALEATKTAKSVRVFFDWNDYLKFYKLGTFWPYTPSIQLLYGLRAALDLIFEEGLDNVIERHSRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVLVPPYIDSSEIIKRAWKRYNLSLGLGLNKVAGKVFRIGHLGNLNELQLLGCLAGVEMILKDVGYPVKLGSGVAAASAYLQNNIPIAERDNRGHCLVLCLX

Domains

Domain	Start-End	Description	Sequence
HMMPanther: PTHR21152:SF7	2-242	SUBFAMILY NOT NAMED,SUBFAMILY NOT NAMED	DHYGHPALLLVDGVSSICALDFRMDEWGVDVALTGSQKALSLPTGIGIVCASPKALEATKTAKSVRVFFDWNDYLKFYKLGTFWPYTPSIQLLYGLRAALDLIFEEGLDNVIERHSRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVLVPPYIDSSEIIKRAWKRYNLSLGLGLNKVAGKVFRIGHLGNLNELQLLGCLAGVEMILKDVGYPVKLGSGVAAASAYLQNNIPIAERDNRGH
HMMPanther: PTHR21152	2-242	FAMILY NOT NAMED,AMINOTRANSFERASE CLASS V	DHYGHPALLLVDGVSSICALDFRMDEWGVDVALTGSQKALSLPTGIGIVCASPKALEATKTAKSVRVFFDWNDYLKFYKLGTFWPYTPSIQLLYGLRAALDLIFEEGLDNVIERHSRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVLVPPYIDSSEIIKRAWKRYNLSLGLGLNKVAGKVFRIGHLGNLNELQLLGCLAGVEMILKDVGYPVKLGSGVAAASAYLQNNIPIAERDNRGH
superfamily: SSF53383 IPR015424	4-215	PLP-dependent transferases Pyridoxal phosphate-dependent transferase, major d	YGHPALLLVDGVSSICALDFRMDEWGVDVALTGSQKALSLPTGIGIVCASPKALEATKTAKSVRVFFDWNDYLKFYKLGTFWPYTPSIQLLYGLRAALDLIFEEGLDNVIERHSRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVLVPPYIDSSEIIKRAWKRYNLSLGLGLNKVAGKVFRIGHLGNLNELQLLGCLAGVEMILKDVGYPV
Gene3D: G3DSA:3.40.640.10 IPR015421	6-96	no description Pyridoxal phosphate-dependent transferase, major r	HPALLLVDGVSSICALDFRMDEWGVDVALTGSQKALSLPTGIGIVCASPKALEATKTAKSVRVFFDWNDYLKFYKLGTFWPYTPSIQLLYG
HMMPfam: PF00266 IPR000192	7-161	Aminotran_5 Aminotransferase, class V/Cysteine desulfurase	PALLLVDGVSSICALDFRMDEWGVDVALTGSQKALSLPTGIGIVCASPKALEATKTAKSVRVFFDWNDYLKFYKLGTFWPYTPSIQLLYGLRAALDLIFEEGLDNVIERHSRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVLVPPYIDSSEII
PatternScan: PS00595 IPR020578	30-50	AA_TRANSFER_CLASS_5 Aminotransferase class-V pyridoxal-phosphate bindi	VDVALTGSQKALSLPTGIGIV
Gene3D: G3DSA:3.90.1150.10 IPR015422	97-221	no description Pyridoxal phosphate-dependent transferase, major r	LRAALDLIFEEGLDNVIERHSRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVLVPPYIDSSEIIKRAWKRYNLSLGLGLNKVAGKVFRIGHLGNLNELQLLGCLAGVEMILKDVGYPVKLGSGV

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Analyses

Blast

Blast matches against Reference R-Genes. Show