PRGDB00068445 (Ghi.8869)

Ghi.8869
Gene Type	Putative_R-Genes,_predicted_from_NCBI_UniGene
GenBank	109873140 (DW502115)
Gene Class	Unknown
Domain Type	Ser-Thr Kinase
Gene Species	Gossypium hirsutum
	Comment?

GH_TMIRS_063_C09_F Cotton Normalized Library dT primed Gossypium hirsutum cDNA, mRNA sequence

DNA Sequence

TGGACAACCGAATGAAGATAGCATTAAGCACGGCTAGGGGCTTAGAACACCTCCATGTTTCAGCAAAACTGGTACATGGCAACATTAAATCCTCCAACATTCTTTTACGATCAGACCACAAAGCTTGTATCTCCGACTTTGGTCTCAATCCACTCTTTGGCAACACCACTCCTCCTAGCCGTGTTGCAGGCTATCGAGCACCTGAAATACTTGAAACCTGCAAAGTTACGTTCGAGTCCGATGTTTACAGCTTTGGAGTGTTACTACTAGAATTATTAACAGGCAAAGCACCTAATCAAGCATCTTTAGGGGAAGAGGGGATCGATCTCCCTCGTTGGGTCCAATCTGTGGTTCGAGAGGAATGGACCGCAGAGGTTTTTGATGTGGAGTTAATGAGATATCATAGAATTGAAGAGGAAATGGTGCAGCTGTTACAAATTGCGATGACTTGCGTATCAACTGTGCCCGATCAAAGACCCGCCATGCAAGAAGTGGTACGAATGATTGAAGATATGAATCGAGGTGAAACTGACGATGGATTACGACAATCGTCTGATGATCGGTCAAAAGGATCCGACGGTCATACTCCTGCGGAATCTAGAACCCCACCGAGATCCTCCACACCGTAGCATAATGTGCACAAAGTGGTCATTTGCTCCAAATTGTGATctttgtttctatttttggggggttttagtttttctcttaattgtcctttgaaattattttttaagtagattttttgggggggggAGATTTGAGTTGTTTTTGGTGGTTGGATAG

Protein sequences

Name	Description	Sequence
Ghi.8869	translated coding region predicted by ESTScan from UniGene Ghi.8869	XDNRMKIALSTARGLEHLHVSAKLVHGNIKSSNILLRSDHKACISDFGLNPLFGNTTPPSRVAGYRAPEILETCKVTFESDVYSFGVLLLELLTGKAPNQASLGEEGIDLPRWVQSVVREEWTAEVFDVELMRYHRIEEEMVQLLQIAMTCVSTVPDQRPAMQEVVRMIEDMNRGETDDGLRQSSDDRSKGSDGHTPAESRTPPRSSTP

Domains

Domain	Start-End	Description	Sequence
ProfileScan: PS50011 IPR000719	1-172	PROTEIN_KINASE_DOM Protein kinase, catalytic domain	XDNRMKIALSTARGLEHLHVSAKLVHGNIKSSNILLRSDHKACISDFGLNPLFGNTTPPSRVAGYRAPEILETCKVTFESDVYSFGVLLLELLTGKAPNQASLGEEGIDLPRWVQSVVREEWTAEVFDVELMRYHRIEEEMVQLLQIAMTCVSTVPDQRPAMQEVVRMIEDM
HMMPanther: PTHR24420:SF779	2-209	SUBFAMILY NOT NAMED	DNRMKIALSTARGLEHLHVSAKLVHGNIKSSNILLRSDHKACISDFGLNPLFGNTTPPSRVAGYRAPEILETCKVTFESDVYSFGVLLLELLTGKAPNQASLGEEGIDLPRWVQSVVREEWTAEVFDVELMRYHRIEEEMVQLLQIAMTCVSTVPDQRPAMQEVVRMIEDMNRGETDDGLRQSSDDRSKGSDGHTPAESRTPPRSSTP
HMMPanther: PTHR24420	2-209	FAMILY NOT NAMED,FAMILY NOT NAMED	DNRMKIALSTARGLEHLHVSAKLVHGNIKSSNILLRSDHKACISDFGLNPLFGNTTPPSRVAGYRAPEILETCKVTFESDVYSFGVLLLELLTGKAPNQASLGEEGIDLPRWVQSVVREEWTAEVFDVELMRYHRIEEEMVQLLQIAMTCVSTVPDQRPAMQEVVRMIEDMNRGETDDGLRQSSDDRSKGSDGHTPAESRTPPRSSTP
Gene3D: G3DSA:1.10.510.10	3-200	no description	NRMKIALSTARGLEHLHVSAKLVHGNIKSSNILLRSDHKACISDFGLNPLFGNTTPPSRVAGYRAPEILETCKVTFESDVYSFGVLLLELLTGKAPNQASLGEEGIDLPRWVQSVVREEWTAEVFDVELMRYHRIEEEMVQLLQIAMTCVSTVPDQRPAMQEVVRMIEDMNRGETDDGLRQSSDDRSKGSDGHTPAES
superfamily: SSF56112 IPR011009	4-169	Protein kinase-like (PK-like) Protein kinase-like domain	RMKIALSTARGLEHLHVSAKLVHGNIKSSNILLRSDHKACISDFGLNPLFGNTTPPSRVAGYRAPEILETCKVTFESDVYSFGVLLLELLTGKAPNQASLGEEGIDLPRWVQSVVREEWTAEVFDVELMRYHRIEEEMVQLLQIAMTCVSTVPDQRPAMQEVVRMI
HMMPfam: PF00069 IPR000719	5-167	Pkinase,Ser-thr Protein kinase, catalytic domain	MKIALSTARGLEHLHVSAKLVHGNIKSSNILLRSDHKACISDFGLNPLFGNTTPPSRVAGYRAPEILETCKVTFESDVYSFGVLLLELLTGKAPNQASLGEEGIDLPRWVQSVVREEWTAEVFDVELMRYHRIEEEMVQLLQIAMTCVSTVPDQRPAMQEVVR

List of Contributions

There has not been any contribution yet.

Add a Contribution

Analyses

Blast

Blast matches against Reference R-Genes. Show