PRGDB00069586 (Han.5577)

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Han.5577
Gene Type Putative_R-Genes,_predicted_from_NCBI_UniGene
GenBank 90465616 (DY927495)
Gene Class Unknown
Domain Type
Gene Species Helianthus annuus

Comment?

CHAZ2195.b1_E22.ab1 CHA(XYZ) common wild sunflower Helianthus annuus cDNA clone CHAZ2195, mRNA sequence

DNA Sequence

CGGACTCTTCTTCTATCTATCTAGATCAGATCTTAAAGAAAGAATGGCGACCTTTGAATTGTACCGCAGATCAACGATTGGCATGTGTTTGACCGAAACCCTTGATGAGATGGTCTCCAATGGGATTCTTAGTCCAGAGCTTGCTATTCAAGTACTTGTTCAGTTTGACAAGTCGATGACCGAAGCACTTGACAGCCAAGTTAAAAGCAAGGTGACCATCAAGGGACACTTGCACACCTACAGATTCTGTGACAATGTGTGGACCTTCATTGTTCAAGACGCCATGTTCAAGTACGATGACATCCAGGAGAATGTCGGTCAAGTGAAAATAGTCGCATGTGACTCCAAGCTCCTTACTCAGTGATTTAGCGTCTAATATCCAGTTGCTGATAAAAGACGGTAGCAGTGGTTAAGAGTGTAGAAAAAGGGTACCACAAAAGAATTTCTAATAATCCTGTTCCCCCTCTCTACTTGTGTGATTCTTCTCCAATTAAGTGttttatttatttttcccttttttcttttACGTTGTACCTGTTTTATGTTGTATTTCGTGTGATTAGATGGAGTGGAAGAAATGTAATGGTGTTTTCATTTAGGATATGAACCCTTATGGCTCTTCTTTCTNGTNNAAAANA


Protein sequences

Name Description Sequence
Han.5577 translated coding region predicted by ESTScan from UniGene Han.5577

MATFELYRRSTIGMCLTETLDEMVSNGILSPELAIQVLVQFDKSMTEALDSQVKSKVTIKGHLHTYRFCDNVWTFIVQDAMFKYDDIQENVGQVKIVACDSKLLTQ

Domains

Domain Start-End Description Sequence

HMMPIR: PIRSF009415
IPR003194
1-106 Transcription initiation factor IIA, gamma subunit
Transcription initiation factor IIA, gamma subunit

MATFELYRRSTIGMCLTETLDEMVSNGILSPELAIQVLVQFDKSMTEALDSQVKSKVTIKGHLHTYRFCDNVWTFIVQDAMFKYDDIQENVGQVKIVACDSKLLTQ

BlastProDom: PD009224
IPR015872
1-50 Q7FPX2_ORYSA_Q7FPX2;
Transcription initiation factor IIA, gamma subunit

MATFELYRRSTIGMCLTETLDEMVSNGILSPELAIQVLVQFDKSMTEALD

HMMPanther: PTHR10966
IPR003194
1-103 TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 2
Transcription initiation factor IIA, gamma subunit

MATFELYRRSTIGMCLTETLDEMVSNGILSPELAIQVLVQFDKSMTEALDSQVKSKVTIKGHLHTYRFCDNVWTFIVQDAMFKYDDIQENVGQVKIVACDSKL

Gene3D: G3DSA:1.10.287.190
IPR015872
2-54 no description
Transcription initiation factor IIA, gamma subunit

ATFELYRRSTIGMCLTETLDEMVSNGILSPELAIQVLVQFDKSMTEALDSQVK

HMMPfam: PF02268
IPR015872
3-49 TFIIA_gamma_N
Transcription initiation factor IIA, gamma subunit

TFELYRRSTIGMCLTETLDEMVSNGILSPELAIQVLVQFDKSMTEAL

superfamily: SSF47396
IPR009083
4-54 Transcription factor IIA (TFIIA), alpha-helical domain
Transcription factor IIA, helical

FELYRRSTIGMCLTETLDEMVSNGILSPELAIQVLVQFDKSMTEALDSQVK

superfamily: SSF50784
IPR009088
52-102 Transcription factor IIA (TFIIA), beta-barrel domain
Transcription factor IIA, beta-barrel

QVKSKVTIKGHLHTYRFCDNVWTFIVQDAMFKYDDIQENVGQVKIVACDSK

HMMPfam: PF02751
IPR015871
52-101 TFIIA_gamma_C
Transcription initiation factor IIA, gamma subunit

QVKSKVTIKGHLHTYRFCDNVWTFIVQDAMFKYDDIQENVGQVKIVACDS

Gene3D: G3DSA:2.30.18.10
IPR009088
55-105 no description
Transcription factor IIA, beta-barrel

SKVTIKGHLHTYRFCDNVWTFIVQDAMFKYDDIQENVGQVKIVACDSKLLT






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