PRGDB00069619 (Han.7942)

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Han.7942
Gene Type Putative_R-Genes,_predicted_from_NCBI_UniGene
GenBank 90467948 (DY929827)
Gene Class Unknown
Domain Type Ser-Thr Kinase
Gene Species Helianthus annuus

Comment?

CHAZ4862.b1_K16.ab1 CHA(XYZ) common wild sunflower Helianthus annuus cDNA clone CHAZ4862, mRNA sequence

DNA Sequence

CCGAGATGTTTTTGATCTACAATTATCTACCTGGTGGAAACCTTGAAAGATTCATTCAAGAAAGGTCAATCCGGGCCATCGATTGGAGAATCCTTCACAAAATCGCTCTCGATATCGCGCGTGCCCTCGCGTACCTCCACGACCAATGCGTCCCACGCGTCCTCCACCGTGATGTGAAACCAAGTAACATACTGCTAGACGACGATCTCAACGCTTACTTGTCGGATTTCGGTTTGGCGAGGCTTTTGGGTACCTCCGAGACCCACGCGACCACCGGGGTTGCCGGAACTTTTGGGTACGTGGCACCAGAATACGCGATGACGTGTCGGGTTTCAGATAAAGCCGATGTTTACAGTTACGGGGTGGTGTTGTTGGAGCTCATTTCCGATAAGAAAGCACTGGACCCGTCTTTCTCATCTTACGGAAACGGGTTCAATATTGTGGCGTGGGCTTGTATGCTGCTGAGACAGGGTCGGGCGAAGGAGTTCTTTACGGAGGGGCTGTGGGATGCGGGCCCGCATGACGATTTGGTTGAGGTGTTGCATCTAGCGGTGGTGTGCACAGTGGATTCGTTGTCGACAAGACCGACGATGAAACAAGTTGTACGGAGGTTGAAACAACTGCAACCTCCATCGTGTTAGGAGGTTTTTGAAGTTTTTAATTTAAGATTGTAAATTGTAGCATAGTTTTTGTTGGTAGAATGATTTTATGCAGGTGATGAGTCTATTGTTTGTTCAAtaaaagcaaaaagtagcgattcaaaaaaa


Protein sequences

Name Description Sequence
Han.7942 translated coding region predicted by ESTScan from UniGene Han.7942

XEMFLIYNYLPGGNLERFIQERSIRAIDWRILHKIALDIARALAYLHDQCVPRVLHRDVKPSNILLDDDLNAYLSDFGLARLLGTSETHATTGVAGTFGYVAPEYAMTCRVSDKADVYSYGVVLLELISDKKALDPSFSSYGNGFNIVAWACMLLRQGRAKEFFTEGLWDAGPHDDLVXGVASSGGVHSGFVVDKTDDETSCTEVETTATSIVLGGF

Domains

Domain Start-End Description Sequence

ProfileScan: PS50011
IPR000719
1-217 PROTEIN_KINASE_DOM
Protein kinase, catalytic domain

XEMFLIYNYLPGGNLERFIQERSIRAIDWRILHKIALDIARALAYLHDQCVPRVLHRDVKPSNILLDDDLNAYLSDFGLARLLGTSETHATTGVAGTFGYVAPEYAMTCRVSDKADVYSYGVVLLELISDKKALDPSFSSYGNGFNIVAWACMLLRQGRAKEFFTEGLWDAGPHDDLVXGVASSGGVHSGFVVDKTDDETSCTEVETTATSIVLGGF

HMMSmart: SM00219
IPR020635
1-181 Tyrosine kinase, catalytic domain
Tyrosine-protein kinase, catalytic domain

XEMFLIYNYLPGGNLERFIQERSIRAIDWRILHKIALDIARALAYLHDQCVPRVLHRDVKPSNILLDDDLNAYLSDFGLARLLGTSETHATTGVAGTFGYVAPEYAMTCRVSDKADVYSYGVVLLELISDKKALDPSFSSYGNGFNIVAWACMLLRQGRAKEFFTEGLWDAGPHDDLVXGV

HMMSmart: SM00220
IPR002290
1-164 Serine/Threonine protein kinases, catalytic
Serine/threonine- / dual-specificity protein kinas

XEMFLIYNYLPGGNLERFIQERSIRAIDWRILHKIALDIARALAYLHDQCVPRVLHRDVKPSNILLDDDLNAYLSDFGLARLLGTSETHATTGVAGTFGYVAPEYAMTCRVSDKADVYSYGVVLLELISDKKALDPSFSSYGNGFNIVAWACMLLRQGRAKEFF

HMMPfam: PF00069
IPR017442
2-134 Pkinase,Ser-thr
Serine/threonine-protein kinase-like domain

EMFLIYNYLPGGNLERFIQERSIRAIDWRILHKIALDIARALAYLHDQCVPRVLHRDVKPSNILLDDDLNAYLSDFGLARLLGTSETHATTGVAGTFGYVAPEYAMTCRVSDKADVYSYGVVLLELISDKKAL

HMMPanther: PTHR24420:SF99
2-178 SUBFAMILY NOT NAMED,SUBFAMILY NOT NAMED

EMFLIYNYLPGGNLERFIQERSIRAIDWRILHKIALDIARALAYLHDQCVPRVLHRDVKPSNILLDDDLNAYLSDFGLARLLGTSETHATTGVAGTFGYVAPEYAMTCRVSDKADVYSYGVVLLELISDKKALDPSFSSYGNGFNIVAWACMLLRQGRAKEFFTEGLWDAGPHDDLV

HMMPanther: PTHR24420
2-178 FAMILY NOT NAMED,FAMILY NOT NAMED

EMFLIYNYLPGGNLERFIQERSIRAIDWRILHKIALDIARALAYLHDQCVPRVLHRDVKPSNILLDDDLNAYLSDFGLARLLGTSETHATTGVAGTFGYVAPEYAMTCRVSDKADVYSYGVVLLELISDKKALDPSFSSYGNGFNIVAWACMLLRQGRAKEFFTEGLWDAGPHDDLV

superfamily: SSF56112
IPR011009
2-129 Protein kinase-like (PK-like)
Protein kinase-like domain

EMFLIYNYLPGGNLERFIQERSIRAIDWRILHKIALDIARALAYLHDQCVPRVLHRDVKPSNILLDDDLNAYLSDFGLARLLGTSETHATTGVAGTFGYVAPEYAMTCRVSDKADVYSYGVVLLELIS

Gene3D: G3DSA:1.10.510.10
3-135 no description

MFLIYNYLPGGNLERFIQERSIRAIDWRILHKIALDIARALAYLHDQCVPRVLHRDVKPSNILLDDDLNAYLSDFGLARLLGTSETHATTGVAGTFGYVAPEYAMTCRVSDKADVYSYGVVLLELISDKKALD

PatternScan: PS00108
IPR008271
54-66 PROTEIN_KINASE_ST
Serine/threonine-protein kinase, active site

VLHRDVKPSNILL

Seg: seg
178-193 seg

VXGVASSGGVHSGFVV






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Analyses

Blast

Blast matches against Reference R-Genes. Show


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