PRGDB00070567 (Lsa.53)

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Lsa.53
Gene Type Putative_R-Genes,_predicted_from_NCBI_UniGene
GenBank 90498747 (DY960605)
Gene Class Unknown
Domain Type
Gene Species Lactuca sativa

Comment?

CLSM10947.b1_E02.ab1 CLS(LMS) lettuce sativa Lactuca sativa cDNA clone CLSM10947, mRNA sequence

DNA Sequence

CTTttccttcctcctcctcctcctTCACAGAGATCCTACGCAATCAGGTAAGGAAAAGATGGACTATACTTATGCACCTGGAAGGAATCATTTGTTTGTTCCGGGACCCGTGAACATCCCGGATCAAGTACTTCGTGCAATGAACCGAAACAATGAAGACTATCGGTCTCCAGCAGTTCCCGCTTTGACTAAAATTTTACTTGAAGATGTGAAGAAGATTTTCAAAACCACTTCGGGGACCCCTTTTCTCATCCCAACTACAGTACGGGTGCATGGGAAAGTGCACTTACAAACACCTTGTCTCCTGGAGACCGAATTGTGTCATTTGTGATTGGACAATTCAGTTTGCTTTGGGTGGATCAACAGCAACGACTTGGGTTAATGTTGATGTGGTGGAAAGTGAATGGGGTGCGGGTGCTGACTTGGAAGTTTTAGCATCAAAACTGGCTGCAGATACTGCGCATACTATTAAGGCTGTCTGCATTGTTCACAATGAGACTGCCACCGGAGTTACAAACAACTTGGCTTCCGTAAGGAAAATACTTGATCACTACCAGCACCCGGCCCTGTTTCTAGTTGATGGGGTGTCATCAATATGCGCTTTGGATTTCCGCATGGATGAATGGGGTGTAGATGTGGCTTTAACCGGTTCTCAGAAAGCACTTTCCCTTCCCACCGGTATGGGAATCGTGTGTGCGAGCCCTAAAGCCATCGAGGCCTCTCAAACTGCAAAATCACTTCGAGTTTTCTTTGACTGGAAAGATTACTTGAAATTCTACAAAATGGGGACTTATTGGCCCTACACTCCTTCCATTCAGCTTCTCTATGGCCTAAAAGCTGCCCTTGATCTCATCTTTGAAGAAAGCTTGGATAATGTTATTGCAAGGCACAATCGTCTTGGCACTGCCACAAGGCTGGCTGTTGAAGCATGGGGGTTGAAAAACTGC


Protein sequences

Name Description Sequence
Lsa.53 translated coding region predicted by ESTScan from UniGene Lsa.53

XFSFLLLLLHRDPTQSGKEKMDYTYAPGRNHLFVPGPVNIPDQVLRAMNRNNEDYRSPAVPALTKILLEDVKKIFKTTSGTPFLIPTTVRVHGKVTYKHLVSWRPNCVICDWTIQFALGGSTATTWVNVDVVESEWGAGADLEVLASKLAADTAHTIKAVCIVHNETATGVTNNLASVRKILDHYQHPALFLVDGVSSICALDFRMDEWGVDVALTGSQKALSLPTGMGIVCASPKAIEASQTAKSLRVFFDWKDYLKFYKMGTYWPYTPSIQLLYGLKAALDLIFEESLDNVIARHNRLGTATRLAVEAWGLKNC

Domains

Domain Start-End Description Sequence

HMMPanther: PTHR21152:SF7
19-316 SUBFAMILY NOT NAMED,SUBFAMILY NOT NAMED

EKMDYTYAPGRNHLFVPGPVNIPDQVLRAMNRNNEDYRSPAVPALTKILLEDVKKIFKTTSGTPFLIPTTVRVHGKVTYKHLVSWRPNCVICDWTIQFALGGSTATTWVNVDVVESEWGAGADLEVLASKLAADTAHTIKAVCIVHNETATGVTNNLASVRKILDHYQHPALFLVDGVSSICALDFRMDEWGVDVALTGSQKALSLPTGMGIVCASPKAIEASQTAKSLRVFFDWKDYLKFYKMGTYWPYTPSIQLLYGLKAALDLIFEESLDNVIARHNRLGTATRLAVEAWGLKNC

HMMPanther: PTHR21152
19-316 FAMILY NOT NAMED,AMINOTRANSFERASE CLASS V

EKMDYTYAPGRNHLFVPGPVNIPDQVLRAMNRNNEDYRSPAVPALTKILLEDVKKIFKTTSGTPFLIPTTVRVHGKVTYKHLVSWRPNCVICDWTIQFALGGSTATTWVNVDVVESEWGAGADLEVLASKLAADTAHTIKAVCIVHNETATGVTNNLASVRKILDHYQHPALFLVDGVSSICALDFRMDEWGVDVALTGSQKALSLPTGMGIVCASPKAIEASQTAKSLRVFFDWKDYLKFYKMGTYWPYTPSIQLLYGLKAALDLIFEESLDNVIARHNRLGTATRLAVEAWGLKNC

superfamily: SSF53383
IPR015424
27-314 PLP-dependent transferases
Pyridoxal phosphate-dependent transferase, major d

PGRNHLFVPGPVNIPDQVLRAMNRNNEDYRSPAVPALTKILLEDVKKIFKTTSGTPFLIPTTVRVHGKVTYKHLVSWRPNCVICDWTIQFALGGSTATTWVNVDVVESEWGAGADLEVLASKLAADTAHTIKAVCIVHNETATGVTNNLASVRKILDHYQHPALFLVDGVSSICALDFRMDEWGVDVALTGSQKALSLPTGMGIVCASPKAIEASQTAKSLRVFFDWKDYLKFYKMGTYWPYTPSIQLLYGLKAALDLIFEESLDNVIARHNRLGTATRLAVEAWGLK

Gene3D: G3DSA:3.40.640.10
IPR015421
41-276 no description
Pyridoxal phosphate-dependent transferase, major r

PDQVLRAMNRNNEDYRSPAVPALTKILLEDVKKIFKTTSGTPFLIPTTVRVHGKVTYKHLVSWRPNCVICDWTIQFALGGSTATTWVNVDVVESEWGAGADLEVLASKLAADTAHTIKAVCIVHNETATGVTNNLASVRKILDHYQHPALFLVDGVSSICALDFRMDEWGVDVALTGSQKALSLPTGMGIVCASPKAIEASQTAKSLRVFFDWKDYLKFYKMGTYWPYTPSIQLLY

HMMPfam: PF00266
IPR000192
127-310 Aminotran_5
Aminotransferase, class V/Cysteine desulfurase

VNVDVVESEWGAGADLEVLASKLAADTAHTIKAVCIVHNETATGVTNNLASVRKILDHYQHPALFLVDGVSSICALDFRMDEWGVDVALTGSQKALSLPTGMGIVCASPKAIEASQTAKSLRVFFDWKDYLKFYKMGTYWPYTPSIQLLYGLKAALDLIFEESLDNVIARHNRLGTATRLAVEA

PatternScan: PS00595
IPR020578
211-231 AA_TRANSFER_CLASS_5
Aminotransferase class-V pyridoxal-phosphate bindi

VDVALTGSQKALSLPTGMGIV

Gene3D: G3DSA:3.90.1150.10
IPR015422
277-315 no description
Pyridoxal phosphate-dependent transferase, major r

GLKAALDLIFEESLDNVIARHNRLGTATRLAVEAWGLKN






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Analyses

Blast

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