PRGDB00070751 (Mdo.2886)

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Mdo.2886
Gene Type Putative_R-Genes,_predicted_from_NCBI_UniGene
GenBank 47966035 (CN848744)
Gene Class Unknown
Domain Type
Gene Species Malus x domestica

Comment?

000520AAEA999020HT (AAEA) Royal Gala pre-opening vegetative bud, normalised 5h Malus x domestica cDNA clone AAEA999020, mRNA sequence

DNA Sequence

GCCTCGCGAAGAATCAACGTTCACAGAGAGAGAGCGAGAGGGCGAAGAAACTCCACAGCGCAAACCCGATAAACTCTTCCACAGCGTCGCCCCCAATCCCTATCGAGTAGATGGCGACGTTTGAGCTGTACAGGAGGTCGACAATCGGAATGTGTTTGACGGAGACTCTGGACGAGATGGTTCAGAGCGGGACTCTCAGTCCCGACCTCGCTATTCAAGTTCTCACTCAGTTCGACAAGTCGATGACTGAAGCCCTTGAAACCCAAGTGAAGAGCAAGGTCACTATCAAGGGACATTTGCACACCTATAGATTCTGCGACAACGTTTGGACCTTCATCTTACAGGATGCTTTGTTCAAGAACGAGGATAGCCAGGAAAACGTTGGCCGTGTTAAAATAGTGGCATGTGACTCAAAGCTGCTGACACAATGAGATGCCAAACTGACGGGGGTAACGTTAAATAAGAATTTAGTAATCTGTTGCTATGGAGGGTGAGGAAAATGTAGCGGGTAATCCGGTTATCTGCAGGAACTGGAACCTATAGGAGATTGAACATAAATTGTAAAAGCCCTCCATTTTGACAACTATCCTTATTTATGGGTACACTGAGGATGTTGTGTGCTTGCTCATATATCTTCGTTCCAAGTTCTATTGGTGGT


Protein sequences

Name Description Sequence
Mdo.2886 translated coding region predicted by ESTScan from UniGene Mdo.2886

MATFELYRRSTIGMCLTETLDEMVQSGTLSPDLAIQVLTQFDKSMTEALETQVKSKVTIKGHLHTYRFCDNVWTFILQDALFKNEDSQENVGRVKIVACDSKLLTQ

Domains

Domain Start-End Description Sequence

BlastProDom: PD009224
IPR015872
1-50 T2AG_ARATH_Q39236;
Transcription initiation factor IIA, gamma subunit

MATFELYRRSTIGMCLTETLDEMVQSGTLSPDLAIQVLTQFDKSMTEALE

HMMPIR: PIRSF009415
IPR003194
1-106 Transcription initiation factor IIA, gamma subunit
Transcription initiation factor IIA, gamma subunit

MATFELYRRSTIGMCLTETLDEMVQSGTLSPDLAIQVLTQFDKSMTEALETQVKSKVTIKGHLHTYRFCDNVWTFILQDALFKNEDSQENVGRVKIVACDSKLLTQ

HMMPanther: PTHR10966
IPR003194
1-103 TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 2
Transcription initiation factor IIA, gamma subunit

MATFELYRRSTIGMCLTETLDEMVQSGTLSPDLAIQVLTQFDKSMTEALETQVKSKVTIKGHLHTYRFCDNVWTFILQDALFKNEDSQENVGRVKIVACDSKL

Gene3D: G3DSA:1.10.287.190
IPR015872
2-54 no description
Transcription initiation factor IIA, gamma subunit

ATFELYRRSTIGMCLTETLDEMVQSGTLSPDLAIQVLTQFDKSMTEALETQVK

HMMPfam: PF02268
IPR015872
3-50 TFIIA_gamma_N
Transcription initiation factor IIA, gamma subunit

TFELYRRSTIGMCLTETLDEMVQSGTLSPDLAIQVLTQFDKSMTEALE

superfamily: SSF47396
IPR009083
4-54 Transcription factor IIA (TFIIA), alpha-helical domain
Transcription factor IIA, helical

FELYRRSTIGMCLTETLDEMVQSGTLSPDLAIQVLTQFDKSMTEALETQVK

HMMPfam: PF02751
IPR015871
52-101 TFIIA_gamma_C
Transcription initiation factor IIA, gamma subunit

QVKSKVTIKGHLHTYRFCDNVWTFILQDALFKNEDSQENVGRVKIVACDS

superfamily: SSF50784
IPR009088
52-102 Transcription factor IIA (TFIIA), beta-barrel domain
Transcription factor IIA, beta-barrel

QVKSKVTIKGHLHTYRFCDNVWTFILQDALFKNEDSQENVGRVKIVACDSK

Gene3D: G3DSA:2.30.18.10
IPR009088
55-105 no description
Transcription factor IIA, beta-barrel

SKVTIKGHLHTYRFCDNVWTFILQDALFKNEDSQENVGRVKIVACDSKLLT






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Analyses

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