PRGDB00071011 (Mdo.24061)
| Mdo.24061 | |
|---|---|
| Gene Type | Putative_R-Genes,_predicted_from_NCBI_UniGene |
| GenBank | 51561289 (CV082428) |
| Gene Class | CNL |
| Domain Type | NBS, LRR |
| Gene Species | Malus x domestica |
DNA Sequence
CGTTGCTGTCGAGGGTTTTCAACTAAATGGCACAAAATGCAAATGCCAGAAGTTGAGGTTTTAGTATTGAATTTCCAGACAAAGAACTATGGTTTACCCGAATCTGTGGTGAACATGGATGAATTGAAGGCTGTGATAGTCACAAATTATGGTTTCTTACCTGCTGAATTGAGTAACTTCCAACTTTTAAGTTCGTTACCAAATCTTAAGAGAATCAGATTAGAACGCATCTCAATTCTTTCCATAACCAAGAATCCCATACAATTGGCGAGTCTGAAGAAGATATCCTTGTTCATGTGTAATATTGGTCAAGCTTTCAATAACTGTTCCATCTCAATCTCATCAGCATTCCCGAATCTAGAGGAAATGAACATCGACTATTGCAGTGATTTAATTGAATTACCCGCCGAGGTTTGTGATCTTAGTAAACTAAGGAAGCTCAGTGTCACCAACTGTCATAAGCTATCTGCCTTGCCTGAAGGGATTGGAAAGTTGGAAAATTTAGAATTGTTGAGGCTAAGATCCTGCACAGAACTGTCAAAGCTTCCAACCTCGATGAAGAACCTTGGAAAGGTAAACTTTCTTGATATATCTGATTGCTTCAGCATCAAGGTGTTGCCCGAAGACATTGGTGAAATGAGTAGTTTAAGAAAGATCAACATGAGGCAATGCTCAAGGTTGCAAGAGCTACCTCCATCAGTCATGGATCTTGAGCAGTTAGAGGAAGTGGTCTGTGATGAAAAGACAAAAGATTTATGGGAA
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| Mdo.24061 | translated coding region predicted by ESTScan from UniGene Mdo.24061 | RCCRGFSTKWHKMQMPEVEVLVLNFQTKNYGLPESVVNMDELKAVIVTNYGFLPAELSNFQLLSSLPNLKRIRLERISILSITKNPIQLASLKKISLFMCNIGQAFNNCSISISSAFPNLEEMNIDYCSDLIELPAEVCDLSKLRKLSVTNCHKLSALPEGIGKLENLELLRLRSCTELSKLPTSMKNLGKVNFLDISDCFSIKVLPEDIGEMSSLRKINMRQCSRLQELPPSVMDLEQLEEVVCDEKTKDLWE |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| Gene3D: G3DSA:3.80.10.10 | 16-243 | no description | PEVEVLVLNFQTKNYGLPESVVNMDELKAVIVTNYGFLPAELSNFQLLSSLPNLKRIRLERISILSITKNPIQLASLKKISLFMCNIGQAFNNCSISISSAFPNLEEMNIDYCSDLIELPAEVCDLSKLRKLSVTNCHKLSALPEGIGKLENLELLRLRSCTELSKLPTSMKNLGKVNFLDISDCFSIKVLPEDIGEMSSLRKINMRQCSRLQELPPSVMDLEQLEEV |
| superfamily: SSF52047 | 31-242 | RNI-like,LRR | GLPESVVNMDELKAVIVTNYGFLPAELSNFQLLSSLPNLKRIRLERISILSITKNPIQLASLKKISLFMCNIGQAFNNCSISISSAFPNLEEMNIDYCSDLIELPAEVCDLSKLRKLSVTNCHKLSALPEGIGKLENLELLRLRSCTELSKLPTSMKNLGKVNFLDISDCFSIKVLPEDIGEMSSLRKINMRQCSRLQELPPSVMDLEQLEE |
| HMMPanther: PTHR23155:SF239 | 32-241 | DISEASE RESISTANCE PROTEIN (CC-NBS-LRR CLASS), PUTATIVE,DISEASE RESISTANCE PROTEIN (CC-NBS-LRR CLASS) | LPESVVNMDELKAVIVTNYGFLPAELSNFQLLSSLPNLKRIRLERISILSITKNPIQLASLKKISLFMCNIGQAFNNCSISISSAFPNLEEMNIDYCSDLIELPAEVCDLSKLRKLSVTNCHKLSALPEGIGKLENLELLRLRSCTELSKLPTSMKNLGKVNFLDISDCFSIKVLPEDIGEMSSLRKINMRQCSRLQELPPSVMDLEQLE |
| HMMPanther: PTHR23155 | 32-241 | FAMILY NOT NAMED,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN | LPESVVNMDELKAVIVTNYGFLPAELSNFQLLSSLPNLKRIRLERISILSITKNPIQLASLKKISLFMCNIGQAFNNCSISISSAFPNLEEMNIDYCSDLIELPAEVCDLSKLRKLSVTNCHKLSALPEGIGKLENLELLRLRSCTELSKLPTSMKNLGKVNFLDISDCFSIKVLPEDIGEMSSLRKINMRQCSRLQELPPSVMDLEQLE |
| Seg: seg | 71-82 | seg | RIRLERISILSI |
| HMMPfam: PF00560 IPR001611
|
215-233 | LRR_1 Leucine-rich repeat
|
SLRKINMRQCSRLQELPPS |
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